Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003299

Physical Location & Seq

Genomic Coordinates Forward (+)

23347512 .. 23348093

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAACACCAAAATCGATTCCCTCGACGTCTGCAAGCCTGCGTGCACCGACGTCGGCAGCCTACCGAACGGTGCCGCTTTAGCAATCCAAAGCTCTGCCCCCTCCACCGTCAACTCCTCTGACACCACTCTGGGTGGCCACATCGCCCGCCGACTCGTCCAAATCGGCGTCACCGACGTGTTCACTGTCCCCGGTGACTTGAACTTAACCCTCCTTGACCACCTCATCGCCGAGCCCAGGCTCACCAACATCGGCTGCTGCAACGAACTCAACGCCGGGTACGCTGCTGACGGCTACGCCCGGTCGCGGGGAGTCGGGGCGTGTGTTGTTACTTTCACTGTGGGTGGGCTCAGTGTTCTCAATGTTATCGCGGGAGCTTACAGTGAGAGTCTGCCATTGATTTGTATAGTTGGAGGACCCAACTTGAACGATTGCGGGACGCACAGGATTCTTCACCACACTATTGGGTTACCGGATTTTAGCCAAGAGCTGACATGCTTCCAGACCGTCACTTGCTATCAGAAATACACTGACGAAAATGAGACCGCCATTAACGAGCAAATCAATGAACCAGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009628 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0034059 GO:0036293 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

194

Amino Acids

20.26

Weight (kDa)

4.67

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPP_enzyme_N	PF02776	43 - 148	5.7e-29	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33070 AT5G01320 AT5G01330
fragaria_vesca	FvH4_6g11100
malus_domestica	MD04G1159900.v1.1 MD04G1160100.v1.1 MD12G1172400.v1.1 MD12G1172500.v1.1 MD12G1173200.v1.1
prunus_persica	Prupe.6G280800_v2.0.a1 Prupe.6G280800_v2.0.a1
pyrus_communis	pycom04g14330 pycom04g14350 pycom12g16360 pycom12g16370 pycom17g25190
rosa_chinensis	RchiOBHm_Chr3g0462531 RchiOBHm_Chr7g0223061
rosa_laevigata	RLG00000024851 RLG00000024852
rosa_multiflora	Rmu_sc0003624.1_g000016 Rmu_sc0011346.1_g000001 Rmu_sc0025654.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335980 Rroxscaffold_6G00417420 Rroxscaffold_6G00417440 Rroxscaffold_6G00417450
rosa_rugosa	Rorug03G0057300 Rorug03G0057400 Rorug03G0141600
rosa_samantha	Rh3AG115300 Rh3BG118700 Rh3CG122100 Rh3DG120800 Rh4AG098400
rosa_wichuraiana	Rw3G009760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	30, 54
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	2 cut(s)	307, 371
AciI	CCGC	6 cut(s)	75, 148, 307, 371, 435, 546
AcoI	YGGCCR	1 cut(s)	136
AcyI	GRCGYC	3 cut(s)	27, 51, 168
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	237, 306, 307
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	202, 427
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	236
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	3 cut(s)	93, 377, 490
AluI	AGCT	3 cut(s)	93, 377, 490
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	536
Alw44I	GTGCAC	1 cut(s)	43
AoxI	GGCC	2 cut(s)	136, 576
ApaLI	GTGCAC	1 cut(s)	43
ApeKI	GCWGC	4 cut(s)	57, 255, 258, 284
AspS9I	GGNCC	1 cut(s)	416
AsuC2I	CCSGG	3 cut(s)	192, 277, 301
AsuHPI	GGTGA	4 cut(s)	163, 206, 235, 446
AvaII	GGWCC	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	237, 351
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	4 cut(s)	69, 242, 245, 271
BceAI	ACGGC	1 cut(s)	307
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	1 cut(s)	238
BcnI	CCSGG	3 cut(s)	192, 277, 301
BcoDI	GTCTC	1 cut(s)	536
BisI	GCNGC	5 cut(s)	58, 75, 256, 259, 285
BlsI	GCNGC	5 cut(s)	59, 76, 257, 260, 286
Bme1390I	CCNGG	4 cut(s)	192, 238, 277, 301
Bme18I	GGWCC	1 cut(s)	416
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	2 cut(s)	73, 418
BmrFI	CCNGG	4 cut(s)	192, 238, 277, 301
BpuMI	CCSGG	3 cut(s)	192, 277, 301
Bsa29I	ATCGAT	1 cut(s)	15
BsaHI	GRCGYC	3 cut(s)	27, 51, 168
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	190, 236
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 306, 307
Bse1I	ACTGG	1 cut(s)	572
BseBI	CCWGG	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	190, 236
BseLI	CCNNNNNNNGG	3 cut(s)	237, 306, 307
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	1 cut(s)	572
BseRI	GAGGAG	1 cut(s)	106
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	4 cut(s)	69, 242, 245, 271
Bsh1236I	CGCG	2 cut(s)	307, 371
Bsh1285I	CGRYCG	1 cut(s)	305
BshFI	GGCC	2 cut(s)	138, 578
BshNI	GGYRCC	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	4 cut(s)	192, 276, 301, 473
BslFI	GGGAC	2 cut(s)	173, 451
BslI	CCNNNNNNNGG	3 cut(s)	237, 306, 307
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	2 cut(s)	173, 451
BsnI	GGCC	2 cut(s)	138, 578
Bso31I	GGTCTC	1 cut(s)	536
Bsp1286I	GDGCHC	3 cut(s)	47, 237, 351
BspACI	CCGC	6 cut(s)	75, 148, 307, 371, 435, 546
BspANI	GGCC	2 cut(s)	138, 578
BspCNI	CTCAG	1 cut(s)	363
BspDI	ATCGAT	1 cut(s)	15
BspFNI	CGCG	2 cut(s)	307, 371
BspLI	GGNNCC	2 cut(s)	73, 418
BspT107I	GGYRCC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	572
BssECI	CCNNGG	2 cut(s)	190, 236
BssNI	GRCGYC	3 cut(s)	27, 51, 168
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	6 cut(s)	71, 109, 187, 340, 383, 508
BstACI	GRCGYC	3 cut(s)	27, 51, 168
BstC8I	GCNNGC	4 cut(s)	35, 39, 43, 148
BstDEI	CTNAG	1 cut(s)	350
BstEII	GGTNACC	1 cut(s)	468
BstFNI	CGCG	2 cut(s)	307, 371
BstMAI	GTCTC	1 cut(s)	536
BstMCI	CGRYCG	1 cut(s)	305
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 281
BstNI	CCWGG	1 cut(s)	238
BstNSI	RCATGY	1 cut(s)	498
BstPI	GGTNACC	1 cut(s)	468
BstSCI	CCNGG	4 cut(s)	190, 236, 275, 299
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	2 cut(s)	307, 371
BstV1I	GCAGC	4 cut(s)	69, 242, 245, 271
BstXI	CCANNNNNNTGG	1 cut(s)	464
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	138, 578
BsuTUI	ATCGAT	1 cut(s)	15
BtgZI	GCGATG	2 cut(s)	127, 211
BtrI	CACGTC	1 cut(s)	178
BtsIMutI	CAGTG	6 cut(s)	183, 336, 358, 388, 528, 579
Cac8I	GCNNGC	4 cut(s)	35, 39, 43, 148
Cfr13I	GGNCC	1 cut(s)	416
ClaI	ATCGAT	1 cut(s)	15
CseI	GACGC	2 cut(s)	157, 448
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	1 cut(s)	495
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	136
Eco24I	GRGCYC	2 cut(s)	237, 351
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	416
Eco91I	GGTNACC	1 cut(s)	468
EcoO109I	RGGNCCY	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	468
EcoRII	CCWGG	1 cut(s)	236
EcoT38I	GRGCYC	2 cut(s)	237, 351
FaeI	CATG	1 cut(s)	498
FaiI	YATR	2 cut(s)	407, 496
FaqI	GGGAC	2 cut(s)	173, 451
FatI	CATG	1 cut(s)	494
FauI	CCCGC	4 cut(s)	155, 300, 364, 428
Fnu4HI	GCNGC	5 cut(s)	58, 75, 256, 259, 285
FriOI	GRGCYC	2 cut(s)	237, 351
Fsp4HI	GCNGC	5 cut(s)	58, 75, 256, 259, 285
GluI	GCNGC	5 cut(s)	58, 75, 256, 259, 285
HaeIII	GGCC	2 cut(s)	138, 578
HapII	CCGG	4 cut(s)	192, 276, 301, 473
HgaI	GACGC	2 cut(s)	157, 448
Hin1I	GRCGYC	3 cut(s)	27, 51, 168
Hin1II	CATG	1 cut(s)	498
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	5 cut(s)	17, 153, 312, 388, 448
HpaII	CCGG	4 cut(s)	192, 276, 301, 473
HphI	GGTGA	4 cut(s)	163, 206, 235, 446
Hpy166II	GTNNAC	3 cut(s)	45, 112, 183
Hpy188I	TCNGA	2 cut(s)	121, 522
Hpy188III	TCNNGA	1 cut(s)	502
Hpy8I	GTNNAC	3 cut(s)	45, 112, 183
Hpy99I	CGWCG	4 cut(s)	29, 53, 56, 179
HpyCH4III	ACNGT	6 cut(s)	71, 109, 187, 340, 383, 508
HpyCH4IV	ACGT	3 cut(s)	27, 51, 177
HpyCH4V	TGCA	3 cut(s)	33, 45, 261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 281
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	3 cut(s)	27, 51, 177
Hsp92I	GRCGYC	3 cut(s)	27, 51, 168
Hsp92II	CATG	1 cut(s)	498
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	4 cut(s)	69, 242, 245, 271
MaeII	ACGT	3 cut(s)	27, 51, 177
MaeIII	GTNAC	5 cut(s)	169, 194, 328, 468, 508
MboII	GAAGA	1 cut(s)	443
MhlI	GDGCHC	3 cut(s)	47, 237, 351
MlsI	TGGCCA	1 cut(s)	138
MluNI	TGGCCA	1 cut(s)	138
MlyI	GAGTC	3 cut(s)	147, 321, 397
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	6 cut(s)	32, 112, 127, 221, 233, 407
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	2 cut(s)	206, 552
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	138
MspI	CCGG	4 cut(s)	192, 276, 301, 473
MspR9I	CCNGG	4 cut(s)	192, 238, 277, 301
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	2 cut(s)	307, 371
MwoI	GCNNNNNNNGC	2 cut(s)	80, 281
NciI	CCSGG	3 cut(s)	192, 277, 301
NlaIII	CATG	1 cut(s)	498
NlaIV	GGNNCC	2 cut(s)	73, 418
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	3 cut(s)	169, 194, 508
NspI	RCATGY	1 cut(s)	498
OliI	CACNNNNGTG	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 171
PfeI	GAWTC	2 cut(s)	17, 448
PkrI	GCNGC	5 cut(s)	59, 76, 257, 260, 286
PleI	GAGTC	3 cut(s)	147, 320, 396
PpsI	GAGTC	3 cut(s)	147, 320, 396
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	236
PspEI	GGTNACC	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	73, 418
PspPI	GGNCC	1 cut(s)	416
PspPPI	RGGWCCY	1 cut(s)	416
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	206, 552
SatI	GCNGC	5 cut(s)	58, 75, 256, 259, 285
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	3 cut(s)	147, 321, 397
ScrFI	CCNGG	4 cut(s)	192, 238, 277, 301
SduI	GDGCHC	3 cut(s)	47, 237, 351
SetI	ASST	7 cut(s)	30, 54, 95, 180, 225, 379, 492
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	176
SsiI	CCGC	6 cut(s)	75, 148, 307, 371, 435, 546
StyD4I	CCNGG	4 cut(s)	190, 236, 275, 299
TaaI	ACNGT	6 cut(s)	71, 109, 187, 340, 383, 508
TaiI	ACGT	3 cut(s)	30, 54, 180
TaqI	TCGA	2 cut(s)	15, 24
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	17, 448
Tru1I	TTAA	2 cut(s)	206, 552
Tru9I	TTAA	2 cut(s)	206, 552
TscAI	CASTG	6 cut(s)	190, 343, 358, 388, 535, 579
TseFI	GTSAC	3 cut(s)	169, 194, 508
TseI	GCWGC	4 cut(s)	57, 255, 258, 284
Tsp45I	GTSAC	3 cut(s)	169, 194, 508
TspDTI	ATGAA	2 cut(s)	17, 582
TspRI	CASTG	6 cut(s)	190, 343, 358, 388, 535, 579
VneI	GTGCAC	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	416
XceI	RCATGY	1 cut(s)	498
ZraI	GACGTC	2 cut(s)	28, 52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.