pycom17g28180

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0005159
Physical Location & Seq
Forward (+)
26204064 .. 26206132
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 762 bp
ATGACCATGGCCTCACAGTCACAGTCACTCCAATTCTTTCACAGCCACATAATCATAAGAAAAAGCACTCTTCCTCCTCCTTCCGTTCCTTTTCATTTCCAGTTGCAGTTGCAGGGTGGTTATACTTATACGCCATATGCTACAGTTGGCGTTGTGCGCAGGAGGCCTCCCTCCAGATTCTCTCTCAAGTATCAAACAATGGCTATGGCCAATGCCAATGATGTAGAGCAGCAGCAGCCGCAGCTGCAAGCCACAGTCACAACCAAGTGCTTCTTTGACATAGATATTGGCGGCGAAGCTGTTGGTCGCCTTGTATTGGGCCTCTTCGGTCAAGTTGTTCCCAAAACCGTTGAAAACTTTCGCGCCTTGTGCACAGGAGAGAAAGGATATGGTTATAAAGGATGCTCTTTCCACCGCATCATCAAAGATTTTATGATCCAAGGAGGGGACTTCACTCAAGGAGATGGAACTGGGGGAGTTAGTATCTATGGTTCCAAATTTGCAGATGAGAGTTTTGCATTGAAGCATGTTGGTCCTGGTGTGCTGAGCATGGCTAATGCAGGCCCTGGTACTAATGGGAGCCAGTTTTTTATTTGCACGGTGAAGACTCCATGGTTGGACAACCGCCATGTGGTTTTTGGACACGTGATTGAGGGAATGGATGTTCTGAGGAAACTCGAGTCCCAAGAGACAAGCAGGCTAGATGTCCCTCGTTTGCCATGCAGAATAGTTAACTGTGGAGAGTTGCTGTTGGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

254

Amino Acids

27.87

Weight (kDa)

8.51

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 92 - 247 8.2e-49 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
Acc16I TGCGCA 1 cut(s) 158
AccII CGCG 1 cut(s) 363
AciI CCGC 4 cut(s) 239, 291, 415, 625
AclWI GGATC 1 cut(s) 430
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 497
AcvI CACGTG 1 cut(s) 646
AfaI GTAC 1 cut(s) 571
AfiI CCNNNNNNNGG 3 cut(s) 316, 445, 631
AflIII ACRYGT 1 cut(s) 643
AgsI TTSAA 2 cut(s) 353, 523
AjnI CCWGG 2 cut(s) 535, 565
AloI GAACNNNNNNTCC 2 cut(s) 648, 680
AluBI AGCT 2 cut(s) 244, 299
AluI AGCT 2 cut(s) 244, 299
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 1 cut(s) 683
Alw44I GTGCAC 1 cut(s) 370
AlwI GGATC 1 cut(s) 430
AlwNI CAGNNNCTG 1 cut(s) 566
Ama87I CYCGRG 1 cut(s) 677
AoxI GGCC 5 cut(s) 9, 164, 207, 319, 562
ApaLI GTGCAC 1 cut(s) 370
ApeKI GCWGC 5 cut(s) 229, 232, 235, 241, 244
ApoI RAATTY 1 cut(s) 497
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 2 cut(s) 159, 365
AspS9I GGNCC 3 cut(s) 319, 533, 563
AsuHPI GGTGA 1 cut(s) 613
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 1 cut(s) 533
BaeGI GKGCMC 1 cut(s) 374
BalI TGGCCA 1 cut(s) 209
BbrPI CACGTG 1 cut(s) 646
BbsI GAAGAC 1 cut(s) 611
Bbv12I GWGCWC 1 cut(s) 374
BbvI GCAGC 5 cut(s) 231, 241, 244, 247, 253
BccI CCATC 1 cut(s) 458
BciT130I CCWGG 2 cut(s) 537, 567
BcoDI GTCTC 1 cut(s) 683
BfaI CTAG 1 cut(s) 701
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 7 cut(s) 230, 233, 236, 239, 242, 245, 292
BlpI GCTNAGC 1 cut(s) 545
BlsI GCNGC 7 cut(s) 231, 234, 237, 240, 243, 246, 293
Bme1390I CCNGG 2 cut(s) 537, 567
Bme18I GGWCC 1 cut(s) 533
BmeT110I CYCGRG 1 cut(s) 677
BmgT120I GGNCC 3 cut(s) 319, 533, 563
BmiI GGNNCC 2 cut(s) 493, 581
BmrFI CCNGG 2 cut(s) 537, 567
BmrI ACTGGG 1 cut(s) 480
BmsI GCATC 2 cut(s) 392, 426
BmuI ACTGGG 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 611
BpmI CTGGAG 1 cut(s) 157
Bpu1102I GCTNAGC 1 cut(s) 545
BpuEI CTTGAG 2 cut(s) 170, 441
BsaAI YACGTR 1 cut(s) 646
BsaJI CCNNGG 4 cut(s) 6, 439, 565, 611
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 58, 88
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 445, 631
Bse1I ACTGG 3 cut(s) 100, 475, 583
BseBI CCWGG 2 cut(s) 537, 567
BseDI CCNNGG 4 cut(s) 6, 439, 565, 611
BseGI GGATG 3 cut(s) 407, 667, 760
BseLI CCNNNNNNNGG 3 cut(s) 316, 445, 631
BseMII CTCAG 2 cut(s) 536, 659
BseNI ACTGG 3 cut(s) 100, 475, 583
BseRI GAGGAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 5 cut(s) 231, 241, 244, 247, 253
Bsh1236I CGCG 1 cut(s) 363
BshFI GGCC 5 cut(s) 11, 166, 209, 321, 564
BsiHKAI GWGCWC 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 677
BslFI GGGAC 3 cut(s) 461, 667, 692
BslI CCNNNNNNNGG 3 cut(s) 316, 445, 631
BsmAI GTCTC 1 cut(s) 683
BsmFI GGGAC 3 cut(s) 461, 667, 692
BsnI GGCC 5 cut(s) 11, 166, 209, 321, 564
BsoBI CYCGRG 1 cut(s) 677
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 435
Bsp1720I GCTNAGC 1 cut(s) 545
Bsp19I CCATGG 2 cut(s) 6, 611
BspACI CCGC 4 cut(s) 239, 291, 415, 625
BspANI GGCC 5 cut(s) 11, 166, 209, 321, 564
BspCNI CTCAG 2 cut(s) 537, 660
BspFNI CGCG 1 cut(s) 363
BspLI GGNNCC 2 cut(s) 493, 581
BspPI GGATC 1 cut(s) 430
BsrI ACTGG 3 cut(s) 100, 475, 583
BssECI CCNNGG 4 cut(s) 6, 439, 565, 611
BssMI GATC 1 cut(s) 435
BssT1I CCWWGG 3 cut(s) 6, 439, 611
Bst2UI CCWGG 2 cut(s) 537, 567
Bst4CI ACNGT 7 cut(s) 18, 24, 145, 256, 349, 601, 737
Bst6I CTCTTC 2 cut(s) 75, 329
BstBAI YACGTR 1 cut(s) 646
BstC8I GCNNGC 3 cut(s) 249, 562, 698
BstDEI CTNAG 2 cut(s) 545, 668
BstDSI CCRYGG 2 cut(s) 6, 611
BstF5I GGATG 3 cut(s) 407, 667, 760
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 2 cut(s) 159, 365
BstKTI GATC 1 cut(s) 438
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 7 cut(s) 156, 163, 235, 238, 241, 244, 369
BstNI CCWGG 2 cut(s) 537, 567
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 535, 565
BstSFI CTRYAG 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 374
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 5 cut(s) 231, 241, 244, 247, 253
BstV2I GAAGAC 1 cut(s) 611
BsuRI GGCC 5 cut(s) 11, 166, 209, 321, 564
BtgI CCRYGG 2 cut(s) 6, 611
BtsCI GGATG 3 cut(s) 407, 667, 760
Cac8I GCNNGC 3 cut(s) 249, 562, 698
CaiI CAGNNNCTG 1 cut(s) 566
CfoI GCGC 2 cut(s) 159, 365
Cfr13I GGNCC 3 cut(s) 319, 533, 563
Csp6I GTAC 1 cut(s) 570
CviAII CATG 6 cut(s) 7, 527, 550, 612, 629, 720
CviQI GTAC 1 cut(s) 570
DdeI CTNAG 2 cut(s) 545, 668
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 75, 329
EarI CTCTTC 2 cut(s) 75, 329
Eco130I CCWWGG 3 cut(s) 6, 439, 611
Eco147I AGGCCT 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 533
Eco72I CACGTG 1 cut(s) 646
Eco88I CYCGRG 1 cut(s) 677
EcoO109I RGGNCCY 1 cut(s) 563
EcoRII CCWGG 2 cut(s) 535, 565
EcoT14I CCWWGG 3 cut(s) 6, 439, 611
ErhI CCWWGG 3 cut(s) 6, 439, 611
FaeI CATG 6 cut(s) 10, 530, 553, 615, 632, 723
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 3 cut(s) 461, 667, 692
FatI CATG 6 cut(s) 6, 526, 549, 611, 628, 719
FauNDI CATATG 1 cut(s) 136
Fnu4HI GCNGC 7 cut(s) 230, 233, 236, 239, 242, 245, 292
FokI GGATG 2 cut(s) 414, 674
Fsp4HI GCNGC 7 cut(s) 230, 233, 236, 239, 242, 245, 292
FspBI CTAG 1 cut(s) 701
FspI TGCGCA 1 cut(s) 158
GlaI GCGC 2 cut(s) 158, 364
GluI GCNGC 7 cut(s) 230, 233, 236, 239, 242, 245, 292
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 5 cut(s) 11, 166, 209, 321, 564
HhaI GCGC 2 cut(s) 159, 365
Hin1II CATG 6 cut(s) 10, 530, 553, 615, 632, 723
Hin6I GCGC 2 cut(s) 157, 363
HinP1I GCGC 2 cut(s) 157, 363
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HinfI GANTC 3 cut(s) 177, 607, 680
HpaI GTTAAC 1 cut(s) 733
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 2 cut(s) 372, 733
Hpy188I TCNGA 1 cut(s) 669
Hpy188III TCNNGA 1 cut(s) 174
Hpy8I GTNNAC 2 cut(s) 372, 733
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 7 cut(s) 18, 24, 145, 256, 349, 601, 737
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 9 cut(s) 106, 112, 247, 372, 503, 518, 560, 597, 723
HpyF10VI GCNNNNNNNGC 7 cut(s) 156, 163, 235, 238, 241, 244, 369
HpyF3I CTNAG 2 cut(s) 545, 668
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 6 cut(s) 10, 530, 553, 615, 632, 723
HspAI GCGC 2 cut(s) 157, 363
KspAI GTTAAC 1 cut(s) 733
Kzo9I GATC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 579
Lsp1109I GCAGC 5 cut(s) 231, 241, 244, 247, 253
LweI GCATC 2 cut(s) 392, 426
MaeI CTAG 1 cut(s) 701
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 18, 24, 256
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 3 cut(s) 62, 316, 616
MhlI GDGCHC 1 cut(s) 374
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 2 cut(s) 32, 497
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 2 cut(s) 601, 689
MmeI TCCRAC 2 cut(s) 597, 732
Mox20I TGGCCA 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 357
MscI TGGCCA 1 cut(s) 209
MseI TTAA 1 cut(s) 732
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 244
MspR9I CCNGG 2 cut(s) 537, 567
MvaI CCWGG 2 cut(s) 537, 567
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 7 cut(s) 156, 163, 235, 238, 241, 244, 369
NcoI CCATGG 2 cut(s) 6, 611
NdeI CATATG 1 cut(s) 136
NdeII GATC 1 cut(s) 435
NlaIII CATG 6 cut(s) 10, 530, 553, 615, 632, 723
NlaIV GGNNCC 2 cut(s) 493, 581
NmuCI GTSAC 3 cut(s) 18, 24, 256
NsbI TGCGCA 1 cut(s) 158
NspI RCATGY 1 cut(s) 530
PaeR7I CTCGAG 1 cut(s) 677
PceI AGGCCT 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 7 cut(s) 231, 234, 237, 240, 243, 246, 293
PleI GAGTC 2 cut(s) 601, 688
PmaCI CACGTG 1 cut(s) 646
PmlI CACGTG 1 cut(s) 646
PpsI GAGTC 2 cut(s) 601, 688
Ppu21I YACGTR 1 cut(s) 646
PsiI TTATAA 1 cut(s) 396
Psp6I CCWGG 2 cut(s) 535, 565
PspCI CACGTG 1 cut(s) 646
PspGI CCWGG 2 cut(s) 535, 565
PspN4I GGNNCC 2 cut(s) 493, 581
PspPI GGNCC 3 cut(s) 319, 533, 563
PspXI VCTCGAGB 1 cut(s) 677
PsrI GAACNNNNNNTAC 2 cut(s) 475, 507
PstNI CAGNNNCTG 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 1 cut(s) 571
RsaNI GTAC 1 cut(s) 570
SaqAI TTAA 1 cut(s) 732
SatI GCNGC 7 cut(s) 230, 233, 236, 239, 242, 245, 292
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 3 cut(s) 319, 533, 563
SchI GAGTC 2 cut(s) 601, 689
ScrFI CCNGG 2 cut(s) 537, 567
SduI GDGCHC 1 cut(s) 374
SetI ASST 3 cut(s) 246, 301, 648
SfaNI GCATC 2 cut(s) 392, 426
SfcI CTRYAG 1 cut(s) 141
Sfr274I CTCGAG 1 cut(s) 677
SinI GGWCC 1 cut(s) 533
SlaI CTCGAG 1 cut(s) 677
SmlI CTYRAG 3 cut(s) 185, 456, 677
SmoI CTYRAG 3 cut(s) 185, 456, 677
Sse9I AATT 2 cut(s) 32, 497
SseBI AGGCCT 1 cut(s) 166
SsiI CCGC 4 cut(s) 239, 291, 415, 625
SspMI CTAG 1 cut(s) 701
StuI AGGCCT 1 cut(s) 166
StyD4I CCNGG 2 cut(s) 535, 565
StyI CCWWGG 3 cut(s) 6, 439, 611
TaaI ACNGT 7 cut(s) 18, 24, 145, 256, 349, 601, 737
TaiI ACGT 1 cut(s) 648
TaqI TCGA 1 cut(s) 678
TaqII GACCGA 1 cut(s) 317
TasI AATT 2 cut(s) 32, 497
TauI GCSGC 2 cut(s) 241, 294
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 732
Tru9I TTAA 1 cut(s) 732
TseFI GTSAC 3 cut(s) 18, 24, 256
TseI GCWGC 5 cut(s) 229, 232, 235, 241, 244
Tsp45I GTSAC 3 cut(s) 18, 24, 256
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 1 cut(s) 73
VneI GTGCAC 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 533
XapI RAATTY 1 cut(s) 497
XceI RCATGY 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XhoI CTCGAG 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.