Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Reverse (-)

498625 .. 499584

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCACATTTATATTTAACAAGGAAATGGATGCAGAATCAACAGCCTGAGGCTTTGTTGGGGCGTTCTGCTTCAAATAGCATATCCGCACCCTATTTACGTCGGCTTAGTTCTAACAGAAGTGGGAGCTTGGTAAACAGTAACAATATGGATTACGATGACGTAGAAGATCTAGAGATGCTGCTTGAGGCATATTTTATGCAACTGGATGGAACCCGTAACAAAATATTATTTGTGAGTGTGCGGGAGTATATTGATGACACGGAGGATTATGTCAACATACAACTTGATAACCAACAAAACGAACTCATTCAGCTCCAGTTGACATTGACCATTGCATCATTTGCGATAGCAGTGGAGACCTTGATATCTGGTATATTTGGTATGAACATCCCCTGTATATTATACACCAAGAAAGGGATATTTGAGCCCTTTGTTGGGGGTATTACGGTATTTTCCGTGTTACTCTTCTTTCTCAAATTCGGGTATGCCAGGTGGAAGAAGCTGCTTGATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

173

Amino Acids

19.73

Weight (kDa)

4.99

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CorA	PF01544	81 - 161	4.7e-08	CorA-like Mg2+ transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	87, 244
AcsI	RAATTY	1 cut(s)	479
AfiI	CCNNNNNNNGG	3 cut(s)	417, 437, 438
AgsI	TTSAA	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	491
AluBI	AGCT	3 cut(s)	129, 316, 505
AluI	AGCT	3 cut(s)	129, 316, 505
Alw26I	GTCTC	1 cut(s)	353
ApeKI	GCWGC	2 cut(s)	181, 505
ApoI	RAATTY	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	309
AxyI	CCTNAGG	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	168, 492
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	1 cut(s)	173
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	2 cut(s)	182, 506
BlsI	GCNGC	2 cut(s)	183, 507
Bme1390I	CCNGG	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	493
BmsI	GCATC	3 cut(s)	21, 168, 347
BpmI	CTGGAG	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	3 cut(s)	417, 437, 438
Bse1I	ACTGG	2 cut(s)	210, 319
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	493
BseGI	GGATG	3 cut(s)	36, 214, 390
BseLI	CCNNNNNNNGG	3 cut(s)	417, 437, 438
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	210, 319
BseXI	GCAGC	2 cut(s)	168, 492
BslI	CCNNNNNNNGG	3 cut(s)	417, 437, 438
BsmAI	GTCTC	1 cut(s)	353
Bso31I	GGTCTC	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	2 cut(s)	87, 244
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	210, 319
BssMI	GATC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	493
Bst4CI	ACNGT	2 cut(s)	140, 451
Bst6I	CTCTTC	1 cut(s)	473
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	48, 107
BstF5I	GGATG	3 cut(s)	36, 214, 390
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	168, 492
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
Bsu36I	CCTNAGG	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	36, 214, 390
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
CviAII	CATG	1 cut(s)	516
CviJI	RGCY	7 cut(s)	46, 53, 106, 129, 316, 430, 505
CviKI_1	RGCY	7 cut(s)	46, 53, 106, 129, 316, 430, 505
DdeI	CTNAG	2 cut(s)	48, 107
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	491
EcoRV	GATATC	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	432
FaeI	CATG	1 cut(s)	519
FatI	CATG	1 cut(s)	515
FauI	CCCGC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	182, 506
FokI	GGATG	3 cut(s)	43, 221, 377
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	2 cut(s)	182, 506
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	2 cut(s)	182, 506
GsuI	CTGGAG	1 cut(s)	302
Hin1II	CATG	1 cut(s)	519
HincII	GTYRAC	2 cut(s)	277, 324
HindII	GTYRAC	2 cut(s)	277, 324
HinfI	GANTC	1 cut(s)	37
Hpy166II	GTNNAC	3 cut(s)	136, 277, 324
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	3 cut(s)	136, 277, 324
Hpy99I	CGWCG	1 cut(s)	105
HpyCH4III	ACNGT	2 cut(s)	140, 451
HpyCH4IV	ACGT	2 cut(s)	100, 162
HpyCH4V	TGCA	3 cut(s)	34, 202, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	48, 107
HpySE526I	ACGT	2 cut(s)	100, 162
Hsp92II	CATG	1 cut(s)	519
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	2 cut(s)	126, 321
LpnPI	CCDG	7 cut(s)	60, 191, 332, 357, 409, 478, 505
Lsp1109I	GCAGC	2 cut(s)	168, 492
LweI	GCATC	3 cut(s)	21, 168, 347
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	2 cut(s)	100, 162
MaeIII	GTNAC	3 cut(s)	140, 218, 462
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	3 cut(s)	179, 460, 511
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	1 cut(s)	479
MnlI	CCTC	3 cut(s)	43, 181, 259
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	493
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	519
NlaIV	GGNNCC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	183, 507
Psp6I	CCWGG	1 cut(s)	491
PspGI	CCWGG	1 cut(s)	491
PspN4I	GGNNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	2 cut(s)	182, 506
Sau3AI	GATC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	493
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	7 cut(s)	103, 131, 165, 318, 365, 497, 507
SfaNI	GCATC	3 cut(s)	21, 168, 347
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	479
SsiI	CCGC	2 cut(s)	87, 244
SspI	AATATT	1 cut(s)	228
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	491
TaaI	ACNGT	2 cut(s)	140, 451
TaiI	ACGT	2 cut(s)	103, 165
TasI	AATT	1 cut(s)	479
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	360
TseI	GCWGC	2 cut(s)	181, 505
TspDTI	ATGAA	1 cut(s)	401
TspGWI	ACGGA	2 cut(s)	278, 448
TspRI	CASTG	1 cut(s)	360
XapI	RAATTY	1 cut(s)	479
XbaI	TCTAGA	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.