Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0004630

Physical Location & Seq

Genomic Coordinates Reverse (-)

606243 .. 609159

Gene Structure 2917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCAGAATCAACAGCCTGGGGCTTTGTTGGGGCATTCTGCTTCAAATAGCATCTGTGCACCCTATTTACGTTGGCTTAGTTCTAACAGAAGTGGGAGCTTGGTAAACAGTAACAGTATGGATTACGATGACGTGCGGGAGTATATTGATAACACGGAGGATTATCTCCAGTTGACATTGACCGTTGCATCATTTGCGATAGCAGTGGAGACCTTGATACCTGGGATATTTGGTATGAACATCCCCTGTACATTATACACCAAGAAAGGGATATTTGAGCCCTTTGTTGGGGGTATTACGGCATTTTCCGTGTTACTCTTCTTTCTCATATTTGGGTATGCTAGGTGGAAGAAGCTGAGTACAAAGAGAAGTGGATACTCCTTACTATTGGACAATATGCTAGAAAAAGTTTCTGTAAAATGGGGACTTAGCATACATGTTTTATCTGTGAGGGATGAACTCGAACATTTGTTGGATAACAATGAAGATATGGCACATTTATATTTAACAAGGAAATGGATGCAGAATCAACAGCCTGAGGCTTTGTTGGGGCGTTCTGCTTCAAATAGCATATCCGCACCCTATTTACGTCGGCTTAGTTCTAACAGAAGTGGGAGCTTGGTAAACAGTAACAATATGGATTACGATGACGTAGAAGATCTAGAGATGCTGCTTGAGGCATATTTTATGCAACTGGATGGAACCCGTAACAAAATATTATCTGTGAGTGTGCGGGAGTATATTGATGACACGGAGGATTATGTCAACATACAACTTGATAACCAACGAAACGAACTCATTCAGCTCCAGTTGACATTGACCATTGCATCATTTGCGATAGCAGTGGAGACCTTGATATCTGGTATATTTGGTATGAACATCCCCTGTATATTATACACCAAGAAAGGGATATTTGAGCCCTTTGTTGGGGGTATTACGGCATTTTCCGTGTTACTCTTCTTTCTCAAATTCGGGTATGCCAGGTGGAAGAAGCTGCTTGATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

336

Amino Acids

37.94

Weight (kDa)

5.23

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CorA	PF01544	241 - 324	2.5e-06	CorA-like Mg2+ transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58970
fragaria_vesca	FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740 FvH4_5g28740
malus_domestica	MD08G1238500.v1.1 MD08G1238700.v1.1 MD15G1430500.v1.1
prunus_persica	Prupe.1G575700_v2.0.a1
pyrus_communis	pycom08g20700 pycom08g20720 pycom15g38020 pycom420g00390 pycom420g00500 pycom420g00530
rosa_chinensis	RchiOBHm_Chr1g0372101 RchiOBHm_Chr6g0246761
rosa_laevigata	RLG00000015250 RLG00000026923
rosa_multiflora	Rmu_sc0001755.1_g000027 Rmu_sc0003131.1_g000033
rosa_roxburghii	Rroxscaffold_4G00285260 Rroxscaffold_7G00214470
rosa_rugosa	Rorug01G0369700
rosa_samantha	Rh1AG378000 Rh1BG341400 Rh1CG354800 Rh1DG372500
rosa_wichuraiana	Rw1G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	136, 576, 733
AcsI	RAATTY	1 cut(s)	968
AfaI	GTAC	2 cut(s)	250, 361
AfiI	CCNNNNNNNGG	6 cut(s)	267, 287, 288, 906, 926, 927
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	45, 564
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	3 cut(s)	16, 220, 980
AluBI	AGCT	5 cut(s)	99, 355, 618, 805, 994
AluI	AGCT	5 cut(s)	99, 355, 618, 805, 994
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	2 cut(s)	203, 842
Alw44I	GTGCAC	1 cut(s)	57
ApaLI	GTGCAC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	670, 994
ApoI	RAATTY	1 cut(s)	968
Asp700I	GAANNNNTTC	1 cut(s)	798
AxyI	CCTNAGG	1 cut(s)	537
BaeGI	GKGCMC	1 cut(s)	61
BanII	GRGCYC	2 cut(s)	282, 921
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	657, 981
BccI	CCATC	1 cut(s)	692
BceAI	ACGGC	2 cut(s)	315, 954
BciT130I	CCWGG	3 cut(s)	18, 222, 982
BciVI	GTATCC	1 cut(s)	368
BcoDI	GTCTC	2 cut(s)	203, 842
BfaI	CTAG	3 cut(s)	342, 401, 662
BfuI	GTATCC	1 cut(s)	368
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	2 cut(s)	671, 995
BlsI	GCNGC	2 cut(s)	672, 996
Bme1390I	CCNGG	3 cut(s)	18, 222, 982
BmgBI	CACGTC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	703
BmrFI	CCNGG	3 cut(s)	18, 222, 982
BmsI	GCATC	5 cut(s)	60, 197, 510, 657, 836
BpmI	CTGGAG	2 cut(s)	152, 791
BpuEI	CTTGAG	1 cut(s)	695
BsaI	GGTCTC	2 cut(s)	203, 842
BsaJI	CCNNGG	2 cut(s)	17, 221
Bsc4I	CCNNNNNNNGG	6 cut(s)	267, 287, 288, 906, 926, 927
Bse1I	ACTGG	3 cut(s)	169, 699, 808
Bse21I	CCTNAGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	822
BseBI	CCWGG	3 cut(s)	18, 222, 982
BseDI	CCNNGG	2 cut(s)	17, 221
BseGI	GGATG	5 cut(s)	240, 460, 525, 703, 879
BseLI	CCNNNNNNNGG	6 cut(s)	267, 287, 288, 906, 926, 927
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	2 cut(s)	347, 528
BseNI	ACTGG	3 cut(s)	169, 699, 808
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	657, 981
BsiHKAI	GWGCWC	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	6 cut(s)	267, 287, 288, 906, 926, 927
BsmAI	GTCTC	2 cut(s)	203, 842
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	34
Bso31I	GGTCTC	2 cut(s)	203, 842
Bsp1286I	GDGCHC	3 cut(s)	61, 282, 921
Bsp1407I	TGTACA	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	658
BspACI	CCGC	3 cut(s)	136, 576, 733
BspCNI	CTCAG	2 cut(s)	348, 529
BspLI	GGNNCC	1 cut(s)	703
BspTNI	GGTCTC	2 cut(s)	203, 842
BsrDI	GCAATG	1 cut(s)	822
BsrGI	TGTACA	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	169, 699, 808
BssECI	CCNNGG	2 cut(s)	17, 221
BssMI	GATC	1 cut(s)	658
Bst2UI	CCWGG	3 cut(s)	18, 222, 982
Bst4CI	ACNGT	4 cut(s)	110, 116, 184, 629
Bst6I	CTCTTC	2 cut(s)	323, 962
BstAPI	GCANNNNNTGC	2 cut(s)	194, 833
BstAUI	TGTACA	1 cut(s)	248
BstDEI	CTNAG	5 cut(s)	77, 356, 428, 537, 596
BstF5I	GGATG	5 cut(s)	240, 460, 525, 703, 879
BstKTI	GATC	1 cut(s)	661
BstMAI	GTCTC	2 cut(s)	203, 842
BstMBI	GATC	1 cut(s)	658
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 833
BstNI	CCWGG	3 cut(s)	18, 222, 982
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	3 cut(s)	16, 220, 980
BstSLI	GKGCMC	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	657, 981
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
Bsu36I	CCTNAGG	1 cut(s)	537
BsuI	GTATCC	1 cut(s)	368
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	5 cut(s)	240, 460, 525, 703, 879
BtsI	GCAGTG	2 cut(s)	210, 849
BtsIMutI	CAGTG	2 cut(s)	210, 849
Csp6I	GTAC	2 cut(s)	249, 360
CviAII	CATG	2 cut(s)	437, 1005
CviQI	GTAC	2 cut(s)	249, 360
DdeI	CTNAG	5 cut(s)	77, 356, 428, 537, 596
DpnI	GATC	1 cut(s)	660
DpnII	GATC	1 cut(s)	658
Eam1104I	CTCTTC	2 cut(s)	323, 962
EarI	CTCTTC	2 cut(s)	323, 962
Eco24I	GRGCYC	2 cut(s)	282, 921
Eco31I	GGTCTC	2 cut(s)	203, 842
Eco32I	GATATC	1 cut(s)	858
Eco81I	CCTNAGG	1 cut(s)	537
EcoRII	CCWGG	3 cut(s)	16, 220, 980
EcoRV	GATATC	1 cut(s)	858
EcoT38I	GRGCYC	2 cut(s)	282, 921
FaeI	CATG	2 cut(s)	440, 1008
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	2 cut(s)	436, 1004
FauI	CCCGC	2 cut(s)	129, 726
Fnu4HI	GCNGC	2 cut(s)	671, 995
FokI	GGATG	5 cut(s)	227, 467, 532, 710, 866
FriOI	GRGCYC	2 cut(s)	282, 921
Fsp4HI	GCNGC	2 cut(s)	671, 995
FspBI	CTAG	3 cut(s)	342, 401, 662
GluI	GCNGC	2 cut(s)	671, 995
GsuI	CTGGAG	2 cut(s)	152, 791
Hin1II	CATG	2 cut(s)	440, 1008
HincII	GTYRAC	3 cut(s)	174, 766, 813
HindII	GTYRAC	3 cut(s)	174, 766, 813
HinfI	GANTC	2 cut(s)	7, 526
Hpy166II	GTNNAC	6 cut(s)	59, 106, 174, 625, 766, 813
Hpy188III	TCNNGA	1 cut(s)	662
Hpy8I	GTNNAC	6 cut(s)	59, 106, 174, 625, 766, 813
Hpy99I	CGWCG	1 cut(s)	594
HpyCH4III	ACNGT	4 cut(s)	110, 116, 184, 629
HpyCH4IV	ACGT	4 cut(s)	70, 132, 589, 651
HpyCH4V	TGCA	6 cut(s)	4, 59, 188, 523, 691, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 833
HpyF3I	CTNAG	5 cut(s)	77, 356, 428, 537, 596
HpySE526I	ACGT	4 cut(s)	70, 132, 589, 651
Hsp92II	CATG	2 cut(s)	440, 1008
Kzo9I	GATC	1 cut(s)	658
LmnI	GCTCC	3 cut(s)	96, 615, 810
Lsp1109I	GCAGC	2 cut(s)	657, 981
LweI	GCATC	5 cut(s)	60, 197, 510, 657, 836
MaeI	CTAG	3 cut(s)	342, 401, 662
MaeII	ACGT	4 cut(s)	70, 132, 589, 651
MaeIII	GTNAC	5 cut(s)	110, 312, 629, 707, 951
MalI	GATC	1 cut(s)	660
MboI	GATC	1 cut(s)	658
MboII	GAAGA	6 cut(s)	310, 361, 497, 668, 949, 1000
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	3 cut(s)	61, 282, 921
MluCI	AATT	1 cut(s)	968
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	5 cut(s)	151, 444, 532, 670, 748
MroXI	GAANNNNTTC	1 cut(s)	798
MseI	TTAA	1 cut(s)	506
MspR9I	CCNGG	3 cut(s)	18, 222, 982
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	3 cut(s)	18, 222, 982
MwoI	GCNNNNNNNGC	2 cut(s)	194, 833
NdeII	GATC	1 cut(s)	658
NlaIII	CATG	2 cut(s)	440, 1008
NlaIV	GGNNCC	1 cut(s)	703
NspI	RCATGY	1 cut(s)	440
PciI	ACATGT	1 cut(s)	436
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	2 cut(s)	7, 526
PkrI	GCNGC	2 cut(s)	672, 996
PscI	ACATGT	1 cut(s)	436
Psp6I	CCWGG	3 cut(s)	16, 220, 980
PspGI	CCWGG	3 cut(s)	16, 220, 980
PspN4I	GGNNCC	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	2 cut(s)	250, 361
RsaNI	GTAC	2 cut(s)	249, 360
SaqAI	TTAA	1 cut(s)	506
SatI	GCNGC	2 cut(s)	671, 995
Sau3AI	GATC	1 cut(s)	658
ScrFI	CCNGG	3 cut(s)	18, 222, 982
SduI	GDGCHC	3 cut(s)	61, 282, 921
SfaNI	GCATC	5 cut(s)	60, 197, 510, 657, 836
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	1 cut(s)	968
SsiI	CCGC	3 cut(s)	136, 576, 733
SspI	AATATT	1 cut(s)	717
SspMI	CTAG	3 cut(s)	342, 401, 662
StyD4I	CCNGG	3 cut(s)	16, 220, 980
TaaI	ACNGT	4 cut(s)	110, 116, 184, 629
TaiI	ACGT	4 cut(s)	73, 135, 592, 654
TaqI	TCGA	1 cut(s)	462
TasI	AATT	1 cut(s)	968
TatI	WGTACW	2 cut(s)	248, 359
TfiI	GAWTC	2 cut(s)	7, 526
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	2 cut(s)	210, 849
TseI	GCWGC	2 cut(s)	670, 994
TspDTI	ATGAA	4 cut(s)	251, 471, 498, 890
TspGWI	ACGGA	4 cut(s)	170, 298, 767, 937
TspRI	CASTG	2 cut(s)	210, 849
VneI	GTGCAC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	968
XbaI	TCTAGA	1 cut(s)	661
XceI	RCATGY	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	798
XspI	CTAG	3 cut(s)	342, 401, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.