Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000976

Orthogroup ID

OG0002402

Physical Location & Seq

Genomic Coordinates Forward (+)

174561 .. 178337

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATAATTCTGAGGCATTCATTCTCTAGAGGCCAAACTAGATGGCATTATTTTTTCTCCCATACCCCGCTAAGAGTTCAACATAACTCTCAGATTCTATTGAGGGATATGGAATTTGCCAAAAATGGTGGGTGGTTTATTTTATTGTTTATGTATTTAGATATGGTTGGAAGCACATTCGCGAAAATACTCGACAAACATTGCCTAGAGGGGCATAATTTCCCAACCTGGTATCGTAATGTCAAGATTCTCCTAACATTGGAGAAGATTATTTACGTACTTGATAAGCCTCTTCCTGACATACCTCTTGGCCCTGAGGCCACAGAGGATGAACGTGCTAAGTATGACAAGCACGTTGAGGATGATACACAAGCCAAGTGCTATCTGTTGGCTTCCATGAATGAGGAGCTACAGAGACAGCACGAGGGCATGGACAGTGCATTTTCCATAATACTCCATCTTACGGAGTTATATTATATGGTGAAGGGACGCGCAACCGTCGCTTTAACTTTGTTTGTGAACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2

Protein Analysis

176

Amino Acids

20.56

Weight (kDa)

6.49

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002402)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29991
malus_domestica	MD00G1044200.v1.1
prunus_persica	Prupe.2G062600_v2.0.a1 Prupe.2G064700_v2.0.a1 Prupe.6G167800_v2.0.a1
pyrus_communis	pycom13g29530 pycom17g02500 pycom39g00040 pycom976g00080
rosa_chinensis	RchiOBHm_Chr1g0376911 RchiOBHm_Chr1g0379561 RchiOBHm_Chr2g0165661 RchiOBHm_Chr2g0176521
rosa_multiflora	Rmu_sc0000070.1_g000011 Rmu_sc0000555.1_g000020 Rmu_sc0001291.1_g000051 Rmu_sc0001306.1_g000003 Rmu_sc0005142.1_g000016 Rmu_ssc0000389.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096870 Rroxscaffold_5G00384810 Rroxscaffold_6G00394930
rosa_samantha	Rh1CG138000 Rh1CG192400 Rh7BG220700
rosa_wichuraiana	Rw0G002230 Rw0G012080 Rw1G007200 Rw1G008660 Rw1G011890 Rw2G018430 Rw3G008190 Rw3G020340 Rw3G024460 Rw4G000210 Rw5G007300 Rw5G015820 Rw5G032410 Rw5G048130 Rw5G049610 Rw7G025770 Rw7G028470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	182, 492
AciI	CCGC	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	113
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	259, 463
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	1 cut(s)	409
AluI	AGCT	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	409
AoxI	GGCC	3 cut(s)	31, 310, 318
ApoI	RAATTY	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	493
AxyI	CCTNAGG	1 cut(s)	315
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BauI	CACGAG	1 cut(s)	422
BccI	CCATC	2 cut(s)	36, 465
BciT130I	CCWGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	3 cut(s)	27, 39, 206
BfmI	CTRYAG	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 463
Bse21I	CCTNAGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	229
BseGI	GGATG	2 cut(s)	334, 367
BseLI	CCNNNNNNNGG	2 cut(s)	259, 463
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	104, 306
BseRI	GAGGAG	1 cut(s)	419
Bsh1236I	CGCG	2 cut(s)	182, 492
BshFI	GGCC	3 cut(s)	33, 312, 320
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	2 cut(s)	259, 463
BsmAI	GTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	501
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	3 cut(s)	33, 312, 320
Bsp68I	TCGCGA	1 cut(s)	182
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	3 cut(s)	33, 312, 320
BspCNI	CTCAG	2 cut(s)	103, 307
BspFNI	CGCG	2 cut(s)	182, 492
BsrDI	GCAATG	1 cut(s)	199
BssSI	CACGAG	1 cut(s)	422
Bst2BI	CACGAG	1 cut(s)	422
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	437, 499
Bst6I	CTCTTC	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	277
BstDEI	CTNAG	5 cut(s)	11, 71, 90, 315, 339
BstF5I	GGATG	2 cut(s)	334, 367
BstFNI	CGCG	2 cut(s)	182, 492
BstHHI	GCGC	1 cut(s)	494
BstMAI	GTCTC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	410
BstSNI	TACGTA	1 cut(s)	277
BstUI	CGCG	2 cut(s)	182, 492
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	33, 312, 320
BtsCI	GGATG	2 cut(s)	334, 367
BtsIMutI	CAGTG	1 cut(s)	442
BtuMI	TCGCGA	1 cut(s)	182
CfoI	GCGC	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	311
CseI	GACGC	1 cut(s)	498
CsiI	ACCWGGT	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	278
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	2 cut(s)	397, 430
CviJI	RGCY	7 cut(s)	33, 289, 312, 320, 374, 392, 409
CviKI_1	RGCY	7 cut(s)	33, 289, 312, 320, 374, 392, 409
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	5 cut(s)	11, 71, 90, 315, 339
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco105I	TACGTA	1 cut(s)	277
Eco81I	CCTNAGG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	227
FaeI	CATG	2 cut(s)	400, 433
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	2 cut(s)	396, 429
FauI	CCCGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	341, 374
FspBI	CTAG	3 cut(s)	27, 39, 206
GlaI	GCGC	1 cut(s)	493
HaeIII	GGCC	3 cut(s)	33, 312, 320
HgaI	GACGC	1 cut(s)	498
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	2 cut(s)	400, 433
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HinfI	GANTC	2 cut(s)	94, 247
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	2 cut(s)	12, 93
Hpy188III	TCNNGA	4 cut(s)	27, 181, 244, 296
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	2 cut(s)	437, 499
HpyCH4IV	ACGT	3 cut(s)	276, 334, 354
HpyCH4V	TGCA	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	5 cut(s)	11, 71, 90, 315, 339
HpySE526I	ACGT	3 cut(s)	276, 334, 354
Hsp92II	CATG	2 cut(s)	400, 433
HspAI	GCGC	1 cut(s)	492
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	4 cut(s)	214, 241, 309, 327
MabI	ACCWGGT	1 cut(s)	227
MaeI	CTAG	3 cut(s)	27, 39, 206
MaeII	ACGT	3 cut(s)	276, 334, 354
MboII	GAAGA	2 cut(s)	277, 284
MluCI	AATT	3 cut(s)	6, 113, 217
MmeI	TCCRAC	1 cut(s)	148
MseI	TTAA	1 cut(s)	506
MspR9I	CCNGG	1 cut(s)	229
Mva1269I	GAATGC	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	2 cut(s)	182, 492
MwoI	GCNNNNNNNGC	1 cut(s)	500
NlaIII	CATG	2 cut(s)	400, 433
NruI	TCGCGA	1 cut(s)	182
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	94, 247
Ppu21I	YACGTR	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	311
RruI	TCGCGA	1 cut(s)	182
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	506
Sau96I	GGNCC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	6 cut(s)	230, 279, 307, 337, 357, 411
SexAI	ACCWGGT	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	410
SnaBI	TACGTA	1 cut(s)	277
Sse9I	AATT	3 cut(s)	6, 113, 217
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	3 cut(s)	27, 39, 206
StyD4I	CCNGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	437, 499
TaiI	ACGT	3 cut(s)	279, 337, 357
TaqI	TCGA	1 cut(s)	192
TasI	AATT	3 cut(s)	6, 113, 217
TfiI	GAWTC	2 cut(s)	94, 247
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	9, 345, 413
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	442
XapI	RAATTY	1 cut(s)	113
XbaI	TCTAGA	1 cut(s)	26
XspI	CTAG	3 cut(s)	27, 39, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.