Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004930

Physical Location & Seq

Genomic Coordinates Reverse (-)

66787192 .. 66787635

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGATCTACCAAAGGTGCGGAACTCCCCACGAACAAGGAGAAGGTCATTTTCATCATGGGATCGACTGGATCCGGAAAAACCAAACTCTCTGTAGATTTAGCATTACAGTTTAAGGGTGAAATCATCAATTCTGACAAAATTCAAGTCTACAAAGGTGGCGATATTATTACTAATAAAGTCTCGGAGATCGAGCGCCAAGGAATTCGCCACCATTTGCTAGGGTTTATTGAAGACACTGAGGAGGACTTCACCATAGAAGATTTTTGCCACCATGTCCAAGGTGCCATTAAAGAAATTATTAACAGCAATTCGATCCCAATCATTGCAGGTGGATCAAACTCGTACATCGAGGCACTCGTTGAATATCCAAAAATTAATTTTGGAGCTAACTATGATTGTTGCTTCTTATTGTTAGAATGCAATTTATTTATGGACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009536 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0052622 GO:0052623 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

147

Amino Acids

16.26

Weight (kDa)

4.91

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	15 - 125	4e-06	Isopentenyl transferase
IPPT	PF01715	49 - 122	5e-20	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63110
fragaria_vesca	FvH4_2g23840
malus_domestica	MD00G1084500.v1.1 MD03G1267900.v1.1 MD11G1288800.v1.1
prunus_persica	Prupe.5G047700_v2.0.a1 Prupe.8G243600_v2.0.a1
pyrus_communis	pycom06g03440
rosa_chinensis	RchiOBHm_Chr6g0291431 RchiOBHm_Chr6g0308751
rosa_laevigata	RLG00000010623 RLG00000010625 RLG00000012115
rosa_multiflora	Rmu_sc0003735.1_g000032
rosa_roxburghii	Rroxscaffold_7G00159980 Rroxscaffold_7G00176060
rosa_rugosa	Rorug06G0219300 Rorug06G0368000
rosa_samantha	Rh6AG331600 Rh6AG479000 Rh6AG479100 Rh6BG338500 Rh6BG488600 Rh6BG488700 Rh6CG344700 Rh6CG493900 Rh6DG331600 Rh6DG479500
rosa_wichuraiana	Rw6G028790 Rw6G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	6 cut(s)	13, 66, 70, 79, 310, 343
AcsI	RAATTY	2 cut(s)	141, 204
AfaI	GTAC	1 cut(s)	347
AgsI	TTSAA	3 cut(s)	146, 233, 365
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	6 cut(s)	13, 66, 70, 79, 310, 343
Aor13HI	TCCGGA	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	141, 204
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AseI	ATTAAT	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	131, 244
BamHI	GGATCC	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	73, 286
BpiI	GAAGAC	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	199, 280
BsaWI	WCCGGW	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	320
BseAI	TCCGGA	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	199, 280
BseJI	GATNNNNATC	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	425
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	6 cut(s)	5, 62, 71, 189, 315, 335
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	232
BspEI	TCCGGA	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	73, 286
BspMI	ACCTGC	1 cut(s)	320
BspPI	GGATC	6 cut(s)	13, 66, 70, 79, 310, 343
BspT107I	GGYRCC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	199, 280
BssMI	GATC	6 cut(s)	5, 62, 71, 189, 315, 335
BssT1I	CCWWGG	2 cut(s)	199, 280
Bst4CI	ACNGT	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	6 cut(s)	8, 65, 74, 192, 318, 338
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	6 cut(s)	5, 62, 71, 189, 315, 335
BstSFI	CTRYAG	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	5, 71
BstYI	RGATCY	2 cut(s)	5, 71
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	320
CfoI	GCGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	2 cut(s)	58, 275
CviJI	RGCY	1 cut(s)	389
CviKI_1	RGCY	1 cut(s)	389
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	6 cut(s)	7, 64, 73, 191, 317, 337
DpnII	GATC	6 cut(s)	5, 62, 71, 189, 315, 335
Eco130I	CCWWGG	2 cut(s)	199, 280
EcoRI	GAATTC	1 cut(s)	204
EcoT14I	CCWWGG	2 cut(s)	199, 280
ErhI	CCWWGG	2 cut(s)	199, 280
FaeI	CATG	2 cut(s)	61, 278
FaiI	YATR	5 cut(s)	59, 257, 276, 396, 434
FatI	CATG	2 cut(s)	57, 274
FblI	GTMKAC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	199
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	61, 278
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	131, 244
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	136, 187
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	329, 423
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	61, 278
HspAI	GCGC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	74
Kzo9I	GATC	6 cut(s)	5, 62, 71, 189, 315, 335
LmnI	GCTCC	1 cut(s)	386
LpnPI	CCDG	3 cut(s)	54, 88, 315
MaeI	CTAG	1 cut(s)	221
MalI	GATC	6 cut(s)	7, 64, 73, 191, 317, 337
MboI	GATC	6 cut(s)	5, 62, 71, 189, 315, 335
MboII	GAAGA	2 cut(s)	245, 272
MflI	RGATCY	2 cut(s)	5, 71
MluCI	AATT	8 cut(s)	130, 141, 204, 297, 310, 375, 379, 424
MnlI	CCTC	3 cut(s)	235, 238, 346
MroI	TCCGGA	1 cut(s)	74
MseI	TTAA	4 cut(s)	114, 291, 303, 378
MspI	CCGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	425
NdeII	GATC	6 cut(s)	5, 62, 71, 189, 315, 335
NlaIII	CATG	2 cut(s)	61, 278
NlaIV	GGNNCC	2 cut(s)	73, 286
PaqCI	CACCTGC	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PctI	GAATGC	1 cut(s)	425
PshBI	ATTAAT	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	73, 286
PsuI	RGATCY	2 cut(s)	5, 71
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	4 cut(s)	114, 291, 303, 378
Sau3AI	GATC	6 cut(s)	5, 62, 71, 189, 315, 335
SetI	ASST	6 cut(s)	19, 48, 160, 286, 334, 391
SfcI	CTRYAG	1 cut(s)	93
Sse9I	AATT	8 cut(s)	130, 141, 204, 297, 310, 375, 379, 424
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	221
StyI	CCWWGG	2 cut(s)	199, 280
TaaI	ACNGT	1 cut(s)	111
TaqI	TCGA	4 cut(s)	65, 192, 314, 351
TasI	AATT	8 cut(s)	130, 141, 204, 297, 310, 375, 379, 424
Tru1I	TTAA	4 cut(s)	114, 291, 303, 378
Tru9I	TTAA	4 cut(s)	114, 291, 303, 378
TscAI	CASTG	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	244
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	2 cut(s)	141, 204
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.