Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003546

Physical Location & Seq

Genomic Coordinates Forward (+)

27900867 .. 27901409

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTTTCTGATGCCTTCATTCCACCTCCTGCTCCCCCTTCATATCCAGACATCCCAACTAAAATCATTGCATGTATCTCAATTGTAACCTTGTTTTTTCTGCTTATTAATCACATGTTGAACATATTCCTTGCCTGGATTCTCGAAGCTATCCCGGAACTCGATCCTGAATCAGGAGGTATTATTTACGGAACCCTGATTAATGTTGGTTCGAACAATCAATTTCGTCAAGCTGTACTGCGATTTCTGCAGAGATTAGGAGTCATAAAGGATGTCATACAGGAAATAGATGCAAAACGAGGGCCACGGCTTAGGGACATGAAGAAATTGCCACCACTAGTGCATTATGGAAGCAATGGAATTGAATTGTCGAGTTCAAGGAGTACTACTGACTGTGCAATTTGTTTGGAGGATTTTTCAGAAGGCGAGTCATGTCAAGTTTTTCCAATGTGCAAGCATGTTTTCCATTCGAATTGCATTGACCATTGGTTGGTGAATAGGTCTACTTGCCCAATTTGTCGAAACTGTATCATAGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

180

Amino Acids

20.22

Weight (kDa)

5.71

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	131 - 174	2.3e-14	Ring finger domain
zf-RING_11	PF17123	131 - 160	1.4e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	132 - 173	2.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	132 - 171	2e-06	RING-type zinc-finger
zf-rbx1	PF12678	135 - 174	6.2e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17450 AT4G35480
fragaria_vesca	FvH4_3g20200 FvH4_5g05151
malus_domestica	MD03G1226600.v1.1 MD03G1226700.v1.1 MD06G1176900.v1.1 MD11G1244200.v1.1 MD11G1244300.v1.1 MD11G1244400.v1.1 MD14G1183100.v1.1
prunus_persica	Prupe.4G182700_v2.0.a1 Prupe.4G182800_v2.0.a1 Prupe.5G175600_v2.0.a1 Prupe.6G077100_v2.0.a1
pyrus_communis	pycom06g15700
rosa_chinensis	RchiOBHm_Chr5g0034021 RchiOBHm_Chr7g0193811
rosa_laevigata	RLG00000004243
rosa_multiflora	Rmu_sc0001436.1_g000029
rosa_roxburghii	Rroxscaffold_1G00046210 Rroxscaffold_3G00261810
rosa_rugosa	Rorug07G0012200
rosa_samantha	Rh5AG235200 Rh5BG235900 Rh5CG265700 Rh5CG265800 Rh5DG242400 Rh7AG138800 Rh7BG139100 Rh7CG142800 Rh7DG140400
rosa_wichuraiana	Rw5G021230 Rw5G021450 Rw7G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	503
AclWI	GGATC	1 cut(s)	158
AfaI	GTAC	2 cut(s)	237, 385
AfiI	CCNNNNNNNGG	2 cut(s)	173, 490
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	121, 365, 378
AhlI	ACTAGT	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	2 cut(s)	149, 233
AluI	AGCT	2 cut(s)	149, 233
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	1 cut(s)	302
AseI	ATTAAT	2 cut(s)	108, 201
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	505
AsuII	TTCGAA	2 cut(s)	212, 470
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	155
BcuI	ACTAGT	1 cut(s)	337
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	248
BmcAI	AGTACT	1 cut(s)	385
Bme1390I	CCNGG	2 cut(s)	136, 155
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	136, 155
BmsI	GCATC	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	311
Bpu14I	TTCGAA	2 cut(s)	212, 470
BpuMI	CCSGG	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 490
Bse3DI	GCAATG	2 cut(s)	66, 361
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	2 cut(s)	51, 277
BseLI	CCNNNNNNNGG	2 cut(s)	173, 490
BseMI	GCAATG	2 cut(s)	66, 361
BshFI	GGCC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	173, 490
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	304
Bsp119I	TTCGAA	2 cut(s)	212, 470
Bsp143I	GATC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	193
BspMAI	CTGCAG	1 cut(s)	252
BspPI	GGATC	1 cut(s)	158
BspT104I	TTCGAA	2 cut(s)	212, 470
BsrDI	GCAATG	2 cut(s)	66, 361
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	395, 527
BstBI	TTCGAA	2 cut(s)	212, 470
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	305
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	51, 277
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	3 cut(s)	75, 118, 461
BstSCI	CCNGG	2 cut(s)	134, 153
BstSFI	CTRYAG	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	304
BtgI	CCRYGG	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	51, 277
Cac8I	GCNNGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	236, 384
CviAII	CATG	5 cut(s)	72, 115, 319, 432, 458
CviJI	RGCY	4 cut(s)	149, 233, 304, 310
CviKI_1	RGCY	4 cut(s)	149, 233, 304, 310
CviQI	GTAC	2 cut(s)	236, 384
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	134
FaeI	CATG	5 cut(s)	75, 118, 322, 435, 461
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	5 cut(s)	71, 114, 318, 431, 457
FblI	GTMKAC	1 cut(s)	503
FokI	GGATG	2 cut(s)	38, 284
FspBI	CTAG	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	5 cut(s)	75, 118, 322, 435, 461
HinfI	GANTC	4 cut(s)	139, 170, 261, 428
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	2 cut(s)	10, 421
Hpy188III	TCNNGA	4 cut(s)	47, 143, 167, 174
Hpy8I	GTNNAC	1 cut(s)	504
HpyAV	CCTTC	3 cut(s)	25, 48, 416
HpyCH4III	ACNGT	2 cut(s)	395, 527
HpyCH4V	TGCA	7 cut(s)	71, 250, 293, 343, 398, 453, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	1 cut(s)	311
Hsp92II	CATG	5 cut(s)	75, 118, 322, 435, 461
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	9 cut(s)	42, 60, 121, 148, 159, 168, 180, 209, 266
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	1 cut(s)	334
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	8 cut(s)	81, 221, 326, 360, 365, 399, 472, 513
MlyI	GAGTC	2 cut(s)	270, 437
MnlI	CCTC	4 cut(s)	36, 170, 293, 403
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	2 cut(s)	108, 201
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	2 cut(s)	136, 155
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	247
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	5 cut(s)	75, 118, 322, 435, 461
NlaIV	GGNNCC	1 cut(s)	193
NspI	RCATGY	3 cut(s)	75, 118, 461
NspV	TTCGAA	2 cut(s)	212, 470
PciI	ACATGT	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	139, 170
PflMI	CCANNNNNTGG	1 cut(s)	490
PfoI	TCCNGGA	1 cut(s)	153
PleI	GAGTC	2 cut(s)	269, 436
PpsI	GAGTC	2 cut(s)	269, 436
PscI	ACATGT	1 cut(s)	114
PshBI	ATTAAT	2 cut(s)	108, 201
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	302
PstI	CTGCAG	1 cut(s)	252
RsaI	GTAC	2 cut(s)	237, 385
RsaNI	GTAC	2 cut(s)	236, 384
SaqAI	TTAA	2 cut(s)	108, 201
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	302
ScaI	AGTACT	1 cut(s)	385
SchI	GAGTC	2 cut(s)	270, 437
ScrFI	CCNGG	2 cut(s)	136, 155
SetI	ASST	6 cut(s)	28, 92, 151, 181, 235, 503
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	248
SfuI	TTCGAA	2 cut(s)	212, 470
SpeI	ACTAGT	1 cut(s)	337
Sse9I	AATT	8 cut(s)	81, 221, 326, 360, 365, 399, 472, 513
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	134, 153
TaaI	ACNGT	2 cut(s)	395, 527
TaqI	TCGA	6 cut(s)	144, 162, 212, 371, 470, 520
TasI	AATT	8 cut(s)	81, 221, 326, 360, 365, 399, 472, 513
TatI	WGTACW	2 cut(s)	235, 383
TfiI	GAWTC	2 cut(s)	139, 170
Tru1I	TTAA	2 cut(s)	108, 201
Tru9I	TTAA	2 cut(s)	108, 201
TspDTI	ATGAA	3 cut(s)	7, 30, 335
TspGWI	ACGGA	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	490
VspI	ATTAAT	2 cut(s)	108, 201
XagI	CCTNNNNNAGG	1 cut(s)	171
XceI	RCATGY	3 cut(s)	75, 118, 461
XmiI	GTMKAC	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	338
ZrmI	AGTACT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.