Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Reverse (-)

48083544 .. 48084542

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCATAAAGTATCTGATGGGCAGCGACGCCGAGTGCAAATCTGCATGGGACTTCTTTATCCTTTCAAGAATTATATGAGTGCTGCATGTTTCATTCCACGCTTGGGGTACATCCTGCACATTATAGAATCTCCACCTATTGACTTTATAATTTTGTCTTTGGACTCTGGTAGGCTAAAATGTGGTAGATTTTCTTTTGGCATATTAAAAAGTGGAAGCATTCTCATTTTCTTCCAAGTTCTGTTGCTTGATGAGGTAACAGTCGACTTGGATGTTGTTGCTAGGATGGACTTATTAGATTTCTTCAAGGAAGAATGTGAGCAGAGAGGAGCTACAATTGTATACGCAACTCATATCTTTGATGGCTTCGAAACACGGGCAACCCATTTAGCTTACATCCAAGATGGTGAGCTAAAGAGAGCTCAGAAGTTATTGGAGGTTGAAGAGTTGAAGAGTTCAGTCAGTCTGTTGTCGAGTCCTGGCTTCGTGCTGAAACCAAGCAGGAGAAAAAGAAACCCAAAAATCCTGCCCAAACGTCATCTCCTTTTGGTATGTCGTCAAGACACATGGCGTATTACCGCTGATATCTTGATGAAGTTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

201

Amino Acids

23.13

Weight (kDa)

9.37

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
AccI	GTMKAC	2 cut(s)	264, 342
AciI	CCGC	1 cut(s)	579
AcyI	GRCGYC	1 cut(s)	28
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	67, 307, 443, 451
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	4 cut(s)	332, 392, 412, 422
AluI	AGCT	4 cut(s)	332, 392, 412, 422
Alw21I	GWGCWC	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	22, 83
AsuHPI	GGTGA	1 cut(s)	419
AsuII	TTCGAA	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	34, 70
BccI	CCATC	4 cut(s)	11, 280, 356, 398
BciT130I	CCWGG	1 cut(s)	480
BfaI	CTAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	23, 84
BlsI	GCNGC	2 cut(s)	24, 85
Bme1390I	CCNGG	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	480
BseGI	GGATG	4 cut(s)	111, 277, 291, 396
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	34, 70
BsgI	GTGCAG	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	219
Bsp119I	TTCGAA	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	424
BspACI	CCGC	1 cut(s)	579
BspCNI	CTCAG	1 cut(s)	436
BspT104I	TTCGAA	1 cut(s)	369
BssNAI	GTATAC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	28
Bst1107I	GTATAC	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	438, 446
BstACI	GRCGYC	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	4 cut(s)	111, 277, 291, 396
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	478
BstV1I	GCAGC	2 cut(s)	34, 70
BstZ17I	GTATAC	1 cut(s)	343
BtsCI	GGATG	4 cut(s)	111, 277, 291, 396
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	3 cut(s)	46, 87, 567
CviJI	RGCY	7 cut(s)	175, 332, 366, 392, 412, 422, 483
CviKI_1	RGCY	7 cut(s)	175, 332, 366, 392, 412, 422, 483
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	423
Eam1104I	CTCTTC	2 cut(s)	438, 446
EarI	CTCTTC	2 cut(s)	438, 446
Ecl136II	GAGCTC	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	478
EcoRV	GATATC	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	424
FaeI	CATG	3 cut(s)	49, 90, 570
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	3 cut(s)	45, 86, 566
FblI	GTMKAC	2 cut(s)	264, 342
Fnu4HI	GCNGC	2 cut(s)	23, 84
FokI	GGATG	4 cut(s)	98, 284, 298, 383
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	2 cut(s)	23, 84
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	2 cut(s)	23, 84
HgaI	GACGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	49, 90, 570
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	3 cut(s)	128, 164, 475
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	2 cut(s)	265, 343
Hpy188I	TCNGA	2 cut(s)	16, 426
Hpy188III	TCNNGA	3 cut(s)	67, 560, 589
Hpy8I	GTNNAC	2 cut(s)	265, 343
Hpy99I	CGWCG	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	5 cut(s)	4, 37, 45, 86, 118
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	535
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	49, 90, 570
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	6 cut(s)	128, 153, 465, 487, 492, 539
Lsp1109I	GCAGC	2 cut(s)	34, 70
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	1 cut(s)	256
MboII	GAAGA	5 cut(s)	223, 295, 323, 455, 463
MfeI	CAATTG	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	3 cut(s)	70, 150, 336
MlyI	GAGTC	2 cut(s)	158, 484
MnlI	CCTC	3 cut(s)	247, 320, 430
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	206, 599
MspA1I	CMGCKG	1 cut(s)	581
MspR9I	CCNGG	1 cut(s)	480
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	480
NlaIII	CATG	3 cut(s)	49, 90, 570
NmeAIII	GCCGAG	1 cut(s)	56
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	90
NspV	TTCGAA	1 cut(s)	369
PctI	GAATGC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	24, 85
PleI	GAGTC	2 cut(s)	158, 483
PpsI	GAGTC	2 cut(s)	158, 483
PsiI	TTATAA	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SacI	GAGCTC	1 cut(s)	424
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	206, 599
SatI	GCNGC	2 cut(s)	23, 84
SchI	GAGTC	2 cut(s)	158, 484
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	8 cut(s)	139, 258, 334, 394, 414, 424, 441, 538
SfuI	TTCGAA	1 cut(s)	369
Sse9I	AATT	3 cut(s)	70, 150, 336
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	478
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	3 cut(s)	264, 369, 473
TasI	AATT	3 cut(s)	70, 150, 336
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	206, 599
Tru9I	TTAA	2 cut(s)	206, 599
TseI	GCWGC	2 cut(s)	22, 83
TspDTI	ATGAA	1 cut(s)	82
XceI	RCATGY	1 cut(s)	90
XmiI	GTMKAC	2 cut(s)	264, 342
XspI	CTAG	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.