RchiOBHm_Chr5g0057141

Transmembrane amino acid transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006420
Physical Location & Seq
Reverse (-)
61031762 .. 61032637
876 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 876 bp
ATGATACTTCATTGTTTTGTATGGGAATGCCAATACACCAAGTGCAAAGCTTGTACCTACATTTCTTCCTTCCTCATCGTGGGATCGCTCGTATCTGTTGGGGTATCAAGAGTTGACTTTCACGCACAAGGAGGTCAGCTGTGGAACATGAGTGGAATCCCAACAGCTATGAGTTTCTACATTTTATGCTTCGGGGGCCACCCGGTTCTACCTTCCATTTATATGTCTATGAGACATCGACATCAGTTCATTAAGGTAATCTCGCTAGGCATGCACTTGAACTCTAATCTTATGTCTTTCATAATAATTTGTTGTTTAATTTCATGGCAATTAATTTGGTATATGCATATATTGAAGGTGTTGATGATTAGATTTCTTCTCACCACCACAACTTGCTTAATTGGTTACAGCTGTGATTGGCTATCTTATGTGCGGAGGAGAAGTGAAATCTCAGATAACCCTCAACCTCCCACCTCAGAAGCTGGTGCAAAAATCGCAATTTATTCATTACTGTTAATGCCGATTACCCGCTATGCACTGATAGTTACCCCCGTAGCTTCGGCTATTGAAGGTCTCCTACCTCAAAACTATTTTGGTAGGAGTTTAATTCAGAGAGCTATTAGGCTAGTAACTTTGGCTAGCAATACCTTATTAGCCTTTTTTTTCCCCTATTTTGAGACCCTAATGGGCTTACTGGGATCCATTTTTGTTGTCTCAGCATCTTTTTTACTACCCTGCGCATGTTACATCAAGCTTACTCCTGGCTTTAGTACTTGGAGCTGCAAGTTAGTAACCACTGTAGCTATAATAGTGTTTGGTGTTCTTGTCGGAATTCTAGGAACATATACAGCCATTGTTGATCTTGTAAACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

291

Amino Acids

32.56

Weight (kDa)

9.02

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 161 - 285 6.9e-10 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 739
AciI CCGC 2 cut(s) 433, 529
AclWI GGATC 3 cut(s) 91, 693, 706
AcsI RAATTY 1 cut(s) 831
AdeI CACNNNGTG 1 cut(s) 42
AfaI GTAC 2 cut(s) 55, 772
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 3 cut(s) 280, 355, 569
AjnI CCWGG 1 cut(s) 760
Alw26I GTCTC 4 cut(s) 226, 578, 671, 718
AlwI GGATC 3 cut(s) 91, 693, 706
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 780
ApoI RAATTY 1 cut(s) 831
AseI ATTAAT 1 cut(s) 332
AspLEI GCGC 1 cut(s) 740
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 373
AsuNHI GCTAGC 1 cut(s) 638
BamHI GGATCC 1 cut(s) 698
BarI GAAGNNNNNNTAC 2 cut(s) 561, 593
BbvI GCAGC 1 cut(s) 767
BciT130I CCWGG 1 cut(s) 762
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 4 cut(s) 226, 578, 671, 718
BfaI CTAG 4 cut(s) 266, 626, 639, 836
BfmI CTRYAG 1 cut(s) 798
BisI GCNGC 1 cut(s) 781
BlsI GCNGC 1 cut(s) 782
BmcAI AGTACT 1 cut(s) 772
Bme1390I CCNGG 2 cut(s) 203, 762
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 197, 700
BmrFI CCNGG 2 cut(s) 203, 762
BmrI ACTGGG 1 cut(s) 704
BmsI GCATC 1 cut(s) 728
BmtI GCTAGC 1 cut(s) 642
BmuI ACTGGG 1 cut(s) 704
BpuMI CCSGG 1 cut(s) 203
BsaI GGTCTC 2 cut(s) 578, 671
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 699
BseBI CCWGG 1 cut(s) 762
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 3 cut(s) 465, 489, 729
BseNI ACTGG 1 cut(s) 699
BseRI GAGGAG 1 cut(s) 451
BseXI GCAGC 1 cut(s) 767
BshFI GGCC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 4 cut(s) 226, 578, 671, 718
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 1 cut(s) 198
Bso31I GGTCTC 2 cut(s) 578, 671
Bsp143I GATC 3 cut(s) 83, 698, 859
BspACI CCGC 2 cut(s) 433, 529
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 3 cut(s) 464, 488, 728
BspLI GGNNCC 2 cut(s) 197, 700
BspOI GCTAGC 1 cut(s) 642
BspPI GGATC 3 cut(s) 91, 693, 706
BspTNI GGTCTC 2 cut(s) 578, 671
BsrI ACTGG 1 cut(s) 699
BssMI GATC 3 cut(s) 83, 698, 859
Bst2UI CCWGG 1 cut(s) 762
Bst4CI ACNGT 2 cut(s) 513, 799
BstC8I GCNNGC 2 cut(s) 272, 640
BstDEI CTNAG 3 cut(s) 451, 475, 715
BstHHI GCGC 1 cut(s) 740
BstKTI GATC 3 cut(s) 86, 701, 862
BstMAI GTCTC 4 cut(s) 226, 578, 671, 718
BstMBI GATC 3 cut(s) 83, 698, 859
BstMWI GCNNNNNNNGC 3 cut(s) 195, 271, 494
BstNI CCWGG 1 cut(s) 762
BstNSI RCATGY 2 cut(s) 274, 744
BstSCI CCNGG 2 cut(s) 201, 760
BstSFI CTRYAG 1 cut(s) 798
BstV1I GCAGC 1 cut(s) 767
BstX2I RGATCY 1 cut(s) 698
BstYI RGATCY 1 cut(s) 698
BsuRI GGCC 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 536, 795
Cac8I GCNNGC 2 cut(s) 272, 640
CaiI CAGNNNCTG 1 cut(s) 482
CfoI GCGC 1 cut(s) 740
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 54, 771
CviAII CATG 4 cut(s) 148, 271, 324, 741
CviQI GTAC 2 cut(s) 54, 771
DdeI CTNAG 3 cut(s) 451, 475, 715
DpnI GATC 3 cut(s) 85, 700, 861
DpnII GATC 3 cut(s) 83, 698, 859
DraIII CACNNNGTG 1 cut(s) 42
Eco31I GGTCTC 2 cut(s) 578, 671
EcoRI GAATTC 1 cut(s) 831
EcoRII CCWGG 1 cut(s) 760
EcoT22I ATGCAT 1 cut(s) 348
FaeI CATG 4 cut(s) 151, 274, 327, 744
FatI CATG 4 cut(s) 147, 270, 323, 740
FauI CCCGC 1 cut(s) 536
Fnu4HI GCNGC 1 cut(s) 781
Fsp4HI GCNGC 1 cut(s) 781
FspBI CTAG 4 cut(s) 266, 626, 639, 836
FspI TGCGCA 1 cut(s) 739
GlaI GCGC 1 cut(s) 739
GluI GCNGC 1 cut(s) 781
HaeIII GGCC 1 cut(s) 198
HapII CCGG 1 cut(s) 203
HhaI GCGC 1 cut(s) 740
Hin1II CATG 4 cut(s) 151, 274, 327, 744
Hin6I GCGC 1 cut(s) 738
HinP1I GCGC 1 cut(s) 738
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 2 cut(s) 48, 752
HinfI GANTC 1 cut(s) 156
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 2 cut(s) 115, 868
Hpy188I TCNGA 4 cut(s) 454, 478, 612, 830
Hpy188III TCNNGA 1 cut(s) 108
Hpy8I GTNNAC 2 cut(s) 115, 868
HpyAV CCTTC 4 cut(s) 79, 222, 349, 563
HpyCH4III ACNGT 2 cut(s) 513, 799
HpyCH4V TGCA 6 cut(s) 45, 274, 346, 488, 536, 783
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 271, 494
HpyF3I CTNAG 3 cut(s) 451, 475, 715
Hsp92II CATG 4 cut(s) 151, 274, 327, 744
HspAI GCGC 1 cut(s) 738
Kzo9I GATC 3 cut(s) 83, 698, 859
LmnI GCTCC 1 cut(s) 777
LpnPI CCDG 6 cut(s) 216, 468, 680, 747, 748, 774
Lsp1109I GCAGC 1 cut(s) 767
LweI GCATC 1 cut(s) 728
MaeI CTAG 4 cut(s) 266, 626, 639, 836
MaeIII GTNAC 5 cut(s) 404, 544, 628, 743, 790
MalI GATC 3 cut(s) 85, 700, 861
MboI GATC 3 cut(s) 83, 698, 859
MboII GAAGA 2 cut(s) 57, 368
MflI RGATCY 1 cut(s) 698
MluCI AATT 8 cut(s) 306, 318, 329, 333, 399, 498, 606, 831
MmeI TCCRAC 1 cut(s) 808
MnlI CCTC 7 cut(s) 83, 125, 429, 471, 477, 484, 591
Mph1103I ATGCAT 1 cut(s) 348
MseI TTAA 7 cut(s) 252, 317, 332, 398, 515, 605, 874
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 2 cut(s) 139, 411
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 2 cut(s) 203, 762
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 1 cut(s) 762
MwoI GCNNNNNNNGC 3 cut(s) 195, 271, 494
NciI CCSGG 1 cut(s) 203
NdeII GATC 3 cut(s) 83, 698, 859
NheI GCTAGC 1 cut(s) 638
NlaIII CATG 4 cut(s) 151, 274, 327, 744
NlaIV GGNNCC 2 cut(s) 197, 700
NsbI TGCGCA 1 cut(s) 739
NsiI ATGCAT 1 cut(s) 348
NspI RCATGY 2 cut(s) 274, 744
PaeI GCATGC 1 cut(s) 274
PctI GAATGC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 782
PshBI ATTAAT 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 760
PspGI CCWGG 1 cut(s) 760
PspN4I GGNNCC 2 cut(s) 197, 700
PspPI GGNCC 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 1 cut(s) 698
PvuII CAGCTG 2 cut(s) 139, 411
RsaI GTAC 2 cut(s) 55, 772
RsaNI GTAC 2 cut(s) 54, 771
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 7 cut(s) 252, 317, 332, 398, 515, 605, 874
SatI GCNGC 1 cut(s) 781
Sau3AI GATC 3 cut(s) 83, 698, 859
Sau96I GGNCC 1 cut(s) 196
ScaI AGTACT 1 cut(s) 772
ScrFI CCNGG 2 cut(s) 203, 762
SfaNI GCATC 1 cut(s) 728
SfcI CTRYAG 1 cut(s) 798
SmiMI CAYNNNNRTG 1 cut(s) 221
SphI GCATGC 1 cut(s) 274
Sse9I AATT 8 cut(s) 306, 318, 329, 333, 399, 498, 606, 831
SsiI CCGC 2 cut(s) 433, 529
SspMI CTAG 4 cut(s) 266, 626, 639, 836
StyD4I CCNGG 2 cut(s) 201, 760
TaaI ACNGT 2 cut(s) 513, 799
TaqI TCGA 1 cut(s) 238
TasI AATT 8 cut(s) 306, 318, 329, 333, 399, 498, 606, 831
TatI WGTACW 1 cut(s) 770
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 7 cut(s) 252, 317, 332, 398, 515, 605, 874
Tru9I TTAA 7 cut(s) 252, 317, 332, 398, 515, 605, 874
TscAI CASTG 2 cut(s) 543, 802
TseI GCWGC 1 cut(s) 780
TspDTI ATGAA 4 cut(s) 238, 289, 312, 495
TspRI CASTG 2 cut(s) 543, 802
VspI ATTAAT 1 cut(s) 332
XapI RAATTY 1 cut(s) 831
XceI RCATGY 2 cut(s) 274, 744
XspI CTAG 4 cut(s) 266, 626, 639, 836
ZrmI AGTACT 1 cut(s) 772
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.