Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006420

Physical Location & Seq

Genomic Coordinates Forward (+)

61722634 .. 61724806

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035151

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTGTTTGAGAAAAAAATATCTTATATATATATATATATATATATATATATATATATATATATATATATTGAACGATTTTTTTTGATATATATATATATATATATATATATATATATATATATATATAAAAGGATTTTTGAAACTAGAGTTTCAAAGCTACATATGACAGAGCCTTTCAATGTCACAGCTAGGTCATCACAACCACCACCACATGTGACGACGCATCGGTCACTGGTGCACTATCCGATTGGTGGGTTTCCCATAAGCAGCGAAGATGGGGTCAGACGAGATCCAAACTCGAAGGATGAACAAGACGTAGACCTGGAGATTGACGCAGGCTTGGACTTGAGTCGAGACCCAAGAGCCGTGATTGGCTATCTTATGTACGGAGGAGGAGTGAAATCTCAGATTACTCTCAACCTCCCCACCTCAGAAGCCGATGCAAAAATCGCTATTTATACATTACTATTAATACCGATTACCTGCTATGCACCGATTGTTACCCCTATAGCTTCTGCTATTGAGGGTCACCTGCCTCAGAACTACCAAAATAGGAGTTTAATTCGAAGAGCTATTAGGATACATTCTTTTTACTACCCTACGCATGCTACATCAAGCTTACTCTTAGGTTTAGTACTTGGAGGTGTAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

219

Amino Acids

25.14

Weight (kDa)

8.77

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006420)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G137000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0025941 RchiOBHm_Chr5g0025971 RchiOBHm_Chr5g0057141 RchiOBHm_Chr5g0057171 RchiOBHm_Chr5g0057201 RchiOBHm_Chr5g0057281 RchiOBHm_Chr5g0057311 RchiOBHm_Chr5g0057321 RchiOBHm_Chr5g0057381
rosa_laevigata	RLG00000035151
rosa_multiflora	Rmu_sc0001334.1_g000013 Rmu_sc0001334.1_g000026
rosa_roxburghii	Rroxscaffold_1G00023040 Rroxscaffold_1G00023080 Rroxscaffold_1G00025370 Rroxscaffold_1G00053300
rosa_rugosa	Rorug05G0305900 Rorug05G0306900 Rorug05G0306900 Rorug05G0307000
rosa_samantha	Rh5BG386200 Rh5DG180600 Rh5DG400200
rosa_wichuraiana	Rw5G035350 Rw5G035400 Rw5G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	543
AasI	GACNNNNNNGTC	1 cut(s)	229
Acc36I	ACCTGC	2 cut(s)	494, 543
AccI	GTMKAC	1 cut(s)	321
AclWI	GGATC	1 cut(s)	287
AfaI	GTAC	2 cut(s)	389, 639
AfiI	CCNNNNNNNGG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	4 cut(s)	74, 143, 156, 181
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	5 cut(s)	160, 191, 515, 575, 621
AluI	AGCT	5 cut(s)	160, 191, 515, 575, 621
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	351
Alw44I	GTGCAC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	287
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	270
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
AseI	ATTAAT	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	524
AsuII	TTCGAA	1 cut(s)	568
BaeGI	GKGCMC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	2 cut(s)	147, 192
BfmI	CTRYAG	1 cut(s)	510
BfuAI	ACCTGC	2 cut(s)	494, 543
BfuI	GTATCC	1 cut(s)	576
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
BmcAI	AGTACT	1 cut(s)	639
Bme1390I	CCNGG	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	2 cut(s)	235, 433
BoxI	GACNNNNGTC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	347
Bpu14I	TTCGAA	1 cut(s)	568
BpuEI	CTTGAG	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	3 cut(s)	422, 447, 554
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	2 cut(s)	408, 411
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	351
Bso31I	GGTCTC	1 cut(s)	351
Bsp119I	TTCGAA	1 cut(s)	568
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	292
BspCNI	CTCAG	3 cut(s)	421, 446, 553
BspMI	ACCTGC	2 cut(s)	494, 543
BspPI	GGATC	1 cut(s)	287
BspQI	GCTCTTC	1 cut(s)	565
BspT104I	TTCGAA	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	240
BssMI	GATC	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	565
BstBI	TTCGAA	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	340, 609
BstDEI	CTNAG	4 cut(s)	408, 433, 540, 628
BstEII	GGTNACC	1 cut(s)	530
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	2 cut(s)	218, 611
BstPAI	GACNNNNGTC	1 cut(s)	351
BstPI	GGTNACC	1 cut(s)	530
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	233
BveI	ACCTGC	2 cut(s)	494, 543
Cac8I	GCNNGC	2 cut(s)	340, 609
CseI	GACGC	2 cut(s)	232, 344
Csp6I	GTAC	2 cut(s)	388, 638
CviAII	CATG	2 cut(s)	215, 608
CviQI	GTAC	2 cut(s)	388, 638
DdeI	CTNAG	4 cut(s)	408, 433, 540, 628
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
DrdI	GACNNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	351
Eco91I	GGTNACC	1 cut(s)	530
EcoO65I	GGTNACC	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	324
FaeI	CATG	2 cut(s)	218, 611
FatI	CATG	2 cut(s)	214, 607
FauNDI	CATATG	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	2 cut(s)	147, 192
GluI	GCNGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	347
HgaI	GACGC	2 cut(s)	232, 344
Hin1II	CATG	2 cut(s)	218, 611
HindIII	AAGCTT	1 cut(s)	619
HinfI	GANTC	1 cut(s)	352
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	241, 322
Hpy188I	TCNGA	5 cut(s)	249, 287, 411, 436, 543
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	2 cut(s)	241, 322
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	3 cut(s)	241, 446, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	4 cut(s)	408, 433, 540, 628
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	218, 611
Kzo9I	GATC	1 cut(s)	292
LguI	GCTCTTC	1 cut(s)	565
LpnPI	CCDG	6 cut(s)	221, 311, 324, 338, 499, 548
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	2 cut(s)	235, 433
MaeI	CTAG	2 cut(s)	147, 192
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	5 cut(s)	184, 217, 231, 502, 530
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	2 cut(s)	287, 582
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	1 cut(s)	564
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	7 cut(s)	386, 389, 434, 442, 520, 549, 638
MseI	TTAA	2 cut(s)	473, 563
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	2 cut(s)	218, 611
NmuCI	GTSAC	4 cut(s)	184, 217, 231, 530
NspI	RCATGY	2 cut(s)	218, 611
NspV	TTCGAA	1 cut(s)	568
PaeI	GCATGC	1 cut(s)	611
PaqCI	CACCTGC	1 cut(s)	543
PciI	ACATGT	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	565
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
PscI	ACATGT	1 cut(s)	214
PshAI	GACNNNNGTC	1 cut(s)	351
PshBI	ATTAAT	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	324
PspEI	GGTNACC	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	2 cut(s)	389, 639
RsaNI	GTAC	2 cut(s)	388, 638
SapI	GCTCTTC	1 cut(s)	565
SaqAI	TTAA	2 cut(s)	473, 563
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	639
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	2 cut(s)	235, 433
SfcI	CTRYAG	1 cut(s)	510
SfuI	TTCGAA	1 cut(s)	568
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	1 cut(s)	564
SspMI	CTAG	2 cut(s)	147, 192
StyD4I	CCNGG	1 cut(s)	324
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	3 cut(s)	302, 355, 568
TaqII	GACCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	564
TatI	WGTACW	1 cut(s)	637
Tru1I	TTAA	2 cut(s)	473, 563
Tru9I	TTAA	2 cut(s)	473, 563
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	4 cut(s)	184, 217, 231, 530
TseI	GCWGC	1 cut(s)	270
Tsp45I	GTSAC	4 cut(s)	184, 217, 231, 530
TspDTI	ATGAA	1 cut(s)	324
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	240
VneI	GTGCAC	1 cut(s)	239
VspI	ATTAAT	1 cut(s)	473
XceI	RCATGY	2 cut(s)	218, 611
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	2 cut(s)	147, 192
ZrmI	AGTACT	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.