Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001334.1

Orthogroup ID

OG0006420

Physical Location & Seq

Genomic Coordinates Forward (+)

176783 .. 177655

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001334.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgatgacatgctatactggcattctactaaaagcatgcatggatgcagacccattattaaccacatatctcgatattgtcaaacgagcatttggcagtaaatggaggattatagcttccgtgattttaaacacggaactatacttagttgctcttggcttggtaatagccgaaagtgaaaatttacacaagttattccccacgtttgccattaagcttggtgacggggcaataataattagcggtagaaagactttcgtcttaattaccgcttgcgttactttaccgacaatattgcttacggatttgagcatattgtcgtatgtgtcggtcatgggagttctttcttctctccttatcgtgggatcactcatcttcgttggagtatcaggagttggctttcaagcacaaggaggtcagctgtggaacatgagtggaatcccgacagctatgagcttctacattttctgtttcgcgggtgttgatgatgagctttcttctcaccaccacgatttgcttggttacggccgtgattggctatcttatgtatggaggaggagtgcaatctcagataaccctcaacctccctacctcagaagccggtgcgaaagtcgctgtttattcattattattaataccgattacccgctatgcattgatggttacccctgtagctttggctatagagggtctcctccctcaaaactaccaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

238

Amino Acids

26.18

Weight (kDa)

7.54

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006420)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G137000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0025941 RchiOBHm_Chr5g0025971 RchiOBHm_Chr5g0057141 RchiOBHm_Chr5g0057171 RchiOBHm_Chr5g0057201 RchiOBHm_Chr5g0057281 RchiOBHm_Chr5g0057311 RchiOBHm_Chr5g0057321 RchiOBHm_Chr5g0057381
rosa_laevigata	RLG00000035151
rosa_multiflora	Rmu_sc0001334.1_g000013 Rmu_sc0001334.1_g000026
rosa_roxburghii	Rroxscaffold_1G00023040 Rroxscaffold_1G00023080 Rroxscaffold_1G00025370 Rroxscaffold_1G00053300
rosa_rugosa	Rorug05G0305900 Rorug05G0306900 Rorug05G0306900 Rorug05G0307000
rosa_samantha	Rh5BG386200 Rh5DG180600 Rh5DG400200
rosa_wichuraiana	Rw5G035350 Rw5G035400 Rw5G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	476
AciI	CCGC	4 cut(s)	243, 270, 476, 647
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	1 cut(s)	404
AluBI	AGCT	7 cut(s)	116, 217, 421, 449, 456, 493, 675
AluI	AGCT	7 cut(s)	116, 217, 421, 449, 456, 493, 675
Alw26I	GTCTC	1 cut(s)	696
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	1 cut(s)	526
ApoI	RAATTY	1 cut(s)	181
AseI	ATTAAT	1 cut(s)	633
AsuHPI	GGTGA	2 cut(s)	233, 494
BccI	CCATC	1 cut(s)	653
BceAI	ACGGC	2 cut(s)	513, 541
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BcoDI	GTCTC	1 cut(s)	696
BfmI	CTRYAG	2 cut(s)	670, 682
BmsI	GCATC	1 cut(s)	34
BoxI	GACNNNNGTC	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	696
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	600
Bse1I	ACTGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	582, 607
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	3 cut(s)	568, 571, 684
BseX3I	CGGCCG	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	476
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	1 cut(s)	528
BsiEI	CGRYCG	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	601
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	696
BsmI	GAATGC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	528
Bso31I	GGTCTC	1 cut(s)	696
Bsp143I	GATC	1 cut(s)	365
BspACI	CCGC	4 cut(s)	243, 270, 476, 647
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	2 cut(s)	581, 606
BspFNI	CGCG	1 cut(s)	476
BspPI	GGATC	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	696
BsrFI	RCCGGY	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	600
BssMI	GATC	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	37, 274
BstDEI	CTNAG	3 cut(s)	145, 568, 593
BstEII	GGTNACC	1 cut(s)	662
BstF5I	GGATG	1 cut(s)	49
BstFNI	CGCG	1 cut(s)	476
BstKTI	GATC	1 cut(s)	368
BstMAI	GTCTC	1 cut(s)	696
BstMBI	GATC	1 cut(s)	365
BstMCI	CGRYCG	1 cut(s)	529
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 612
BstNSI	RCATGY	2 cut(s)	12, 39
BstPAI	GACNNNNGTC	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	662
BstSFI	CTRYAG	2 cut(s)	670, 682
BstUI	CGCG	1 cut(s)	476
BstZI	CGGCCG	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	37, 274
Cfr10I	RCCGGY	1 cut(s)	600
CviAII	CATG	5 cut(s)	9, 36, 40, 334, 430
DdeI	CTNAG	3 cut(s)	145, 568, 593
DpnI	GATC	1 cut(s)	367
DpnII	GATC	1 cut(s)	365
DraI	TTTAAA	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	526
EagI	CGGCCG	1 cut(s)	526
EclXI	CGGCCG	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	696
Eco52I	CGGCCG	1 cut(s)	526
Eco91I	GGTNACC	1 cut(s)	662
EcoO65I	GGTNACC	1 cut(s)	662
EcoT22I	ATGCAT	2 cut(s)	41, 656
FaeI	CATG	5 cut(s)	12, 39, 43, 337, 433
FatI	CATG	5 cut(s)	8, 35, 39, 333, 429
FauI	CCCGC	2 cut(s)	469, 654
FokI	GGATG	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	528
HapII	CCGG	1 cut(s)	601
Hin1II	CATG	5 cut(s)	12, 39, 43, 337, 433
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	1 cut(s)	438
HpaII	CCGG	1 cut(s)	601
HphI	GGTGA	2 cut(s)	233, 494
Hpy188I	TCNGA	2 cut(s)	571, 596
Hpy188III	TCNNGA	3 cut(s)	71, 390, 442
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	4 cut(s)	39, 47, 563, 654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 612
HpyF3I	CTNAG	3 cut(s)	145, 568, 593
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	5 cut(s)	12, 39, 43, 337, 433
Kzo9I	GATC	1 cut(s)	365
LpnPI	CCDG	4 cut(s)	3, 375, 614, 682
LweI	GCATC	1 cut(s)	34
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	4 cut(s)	221, 277, 521, 662
MalI	GATC	1 cut(s)	367
MboI	GATC	1 cut(s)	365
MboII	GAAGA	3 cut(s)	339, 367, 489
MluCI	AATT	3 cut(s)	181, 237, 264
MmeI	TCCRAC	1 cut(s)	361
Mph1103I	ATGCAT	2 cut(s)	41, 656
MseI	TTAA	5 cut(s)	59, 128, 213, 263, 633
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	1 cut(s)	601
Mva1269I	GAATGC	1 cut(s)	21
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	18, 612
NdeII	GATC	1 cut(s)	365
NlaIII	CATG	5 cut(s)	12, 39, 43, 337, 433
NmuCI	GTSAC	1 cut(s)	221
NsiI	ATGCAT	2 cut(s)	41, 656
NspI	RCATGY	2 cut(s)	12, 39
PaeI	GCATGC	1 cut(s)	39
PctI	GAATGC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	438
PshAI	GACNNNNGTC	1 cut(s)	257
PshBI	ATTAAT	1 cut(s)	633
PspEI	GGTNACC	1 cut(s)	662
PvuII	CAGCTG	1 cut(s)	421
SaqAI	TTAA	5 cut(s)	59, 128, 213, 263, 633
Sau3AI	GATC	1 cut(s)	365
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	2 cut(s)	670, 682
SphI	GCATGC	1 cut(s)	39
Sse9I	AATT	3 cut(s)	181, 237, 264
SsiI	CCGC	4 cut(s)	243, 270, 476, 647
SspI	AATATT	1 cut(s)	294
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	1 cut(s)	72
TaqII	GACCGA	1 cut(s)	319
TasI	AATT	3 cut(s)	181, 237, 264
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	5 cut(s)	59, 128, 213, 263, 633
Tru9I	TTAA	5 cut(s)	59, 128, 213, 263, 633
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	613
TspGWI	ACGGA	3 cut(s)	109, 149, 317
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	2 cut(s)	12, 39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	515
Zsp2I	ATGCAT	2 cut(s)	41, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.