Rorug05G0307000

Transmembrane amino acid transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006420
Physical Location & Seq
Forward (+)
35936611 .. 35936784
174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0307000.1

Sequence Viewer

Length: 174 bp
ATGGCCGCCAGGTTTCACTCCAATTGCCCCAAGATCTGTCGCAAGTACTACCATCCTCCGGCGCCCAACCACCACGAAAACAAATACCACCACCATCACCACAACAACAACCACCAGCATAATGATCTGGGACCCAGAAATTTGCTCAGGGCACCCATGTTCTCTGCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

57

Amino Acids

6.79

Weight (kDa)

9.78

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 61, 151
AciI CCGC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 139
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 58
AjnI CCWGG 1 cut(s) 8
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 139
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 2 cut(s) 61, 151
BccI CCATC 2 cut(s) 60, 102
BciT130I CCWGG 1 cut(s) 10
BfoI RGCGCY 1 cut(s) 65
BglII AGATCT 1 cut(s) 33
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 4 cut(s) 63, 132, 133, 153
BmrFI CCNGG 1 cut(s) 10
Bpu10I CCTNAGC 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 154
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 61, 151
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 33, 124
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 4 cut(s) 63, 132, 133, 153
BspT107I GGYRCC 2 cut(s) 61, 151
BssMI GATC 2 cut(s) 33, 124
BssNI GRCGYC 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 10
BstACI GRCGYC 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 146, 171
BstF5I GGATG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 36, 127
BstMBI GATC 2 cut(s) 33, 124
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstSLI GKGCMC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 52
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 157
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 2 cut(s) 146, 171
DinI GGCGCC 1 cut(s) 63
DpnI GATC 2 cut(s) 35, 126
DpnII GATC 2 cut(s) 33, 124
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
FaeI CATG 1 cut(s) 160
FaiI YATR 2 cut(s) 120, 158
FaqI GGGAC 1 cut(s) 144
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 59
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 146, 171
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 62
KasI GGCGCC 1 cut(s) 61
KflI GGGWCCC 1 cut(s) 131
Kzo9I GATC 2 cut(s) 33, 124
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 6 cut(s) 22, 72, 113, 128, 133, 148
MalI GATC 2 cut(s) 35, 126
MboI GATC 2 cut(s) 33, 124
MfeI CAATTG 1 cut(s) 22
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 2 cut(s) 22, 139
Mly113I GGCGCC 1 cut(s) 62
MnlI CCTC 1 cut(s) 66
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 10
MunI CAATTG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 10
NarI GGCGCC 1 cut(s) 62
NdeII GATC 2 cut(s) 33, 124
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 4 cut(s) 63, 132, 133, 153
PkrI GCNGC 1 cut(s) 7
PluTI GGCGCC 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 4 cut(s) 63, 132, 133, 153
PspPI GGNCC 1 cut(s) 131
PspPPI RGGWCCY 1 cut(s) 131
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 33, 124
Sau96I GGNCC 1 cut(s) 131
ScaI AGTACT 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 1 cut(s) 154
SetI ASST 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 63
SinI GGWCC 1 cut(s) 131
Sse9I AATT 2 cut(s) 22, 139
SsiI CCGC 1 cut(s) 6
SspDI GGCGCC 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 8
TasI AATT 2 cut(s) 22, 139
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 1 cut(s) 139
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.