RchiOBHm_Chr5g0057321

Transmembrane amino acid transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006420
Physical Location & Seq
Reverse (-)
61227693 .. 61228286
594 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33410

Sequence Viewer

Length: 594 bp
ATGATGACATGCTATACTGACATGTTACTTAAAGCATGCATGGATACGGACCCATCAATAACCACCTACCTTGATATTGTTGAACGAGCTTTTCGTAATAAATGGAGGATTATAGCTTCCGTGTTTTTAAACACGGAACAATACTTAGTTGCTCTTGGCTTGGTAATAGCCGTAAATGAAAATTTACACAAATTATTCGCCACATTTGCCATTAGTGGCGGGGCAATAATTATTGGCGGTAGAAAGACTTTCATCTTAATTACCGCTTGTAATACTTTACCGACAATACTGCTCACGAATTTGAGCATATTGTCGTATGTTTTAGCCAAGGGGGTTATTTCGTCCCTCCTCATCGTGGGATCGCTCATATCTGTTGGAGTATCAGGAGTTGGCTTTCACACACAAGGAGGTCAACTGTGGAACATGAGTGGAATCCCGACATCCATGAGTTTCTACATTTTTTGCTTCGCGGGCCATCCGGTTCTACCTTCTATTTATATGTCTATGAGACATCGACATCAGTTCATTAAGGTAATCTCGTTAGGCATGCACTTGAATTCTAATCTGATGTCTTTCATAATATTTGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

197

Amino Acids

21.69

Weight (kDa)

9.18

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 2 - 187 8.9e-17 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 470
AciI CCGC 4 cut(s) 219, 237, 264, 470
AclWI GGATC 1 cut(s) 367
AcsI RAATTY 3 cut(s) 181, 298, 556
AfiI CCNNNNNNNGG 1 cut(s) 355
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 2 cut(s) 83, 556
AluBI AGCT 2 cut(s) 89, 116
AluI AGCT 2 cut(s) 89, 116
Alw26I GTCTC 1 cut(s) 502
AlwI GGATC 1 cut(s) 367
AoxI GGCC 1 cut(s) 472
ApoI RAATTY 3 cut(s) 181, 298, 556
AspS9I GGNCC 2 cut(s) 49, 472
AvaII GGWCC 1 cut(s) 49
BccI CCATC 2 cut(s) 61, 483
BceAI ACGGC 1 cut(s) 155
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BciVI GTATCC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 502
BfuI GTATCC 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 49, 472
BmiI GGNNCC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 478
Bsc4I CCNNNNNNNGG 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 2 cut(s) 440, 475
BseLI CCNNNNNNNGG 1 cut(s) 355
BseRI GAGGAG 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 470
BshFI GGCC 1 cut(s) 474
BsiSI CCGG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 502
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 474
Bsp143I GATC 1 cut(s) 359
BspACI CCGC 4 cut(s) 219, 237, 264, 470
BspANI GGCC 1 cut(s) 474
BspFNI CGCG 1 cut(s) 470
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 1 cut(s) 359
BssT1I CCWWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 417
BstC8I GCNNGC 3 cut(s) 37, 472, 548
BstDEI CTNAG 1 cut(s) 145
BstF5I GGATG 2 cut(s) 440, 475
BstFNI CGCG 1 cut(s) 470
BstKTI GATC 1 cut(s) 362
BstMAI GTCTC 1 cut(s) 502
BstMBI GATC 1 cut(s) 359
BstMWI GCNNNNNNNGC 2 cut(s) 206, 471
BstNSI RCATGY 4 cut(s) 12, 25, 39, 550
BstUI CGCG 1 cut(s) 470
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 474
BtsCI GGATG 2 cut(s) 440, 475
Cac8I GCNNGC 3 cut(s) 37, 472, 548
Cfr13I GGNCC 2 cut(s) 49, 472
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 7 cut(s) 9, 22, 36, 40, 424, 445, 547
CviJI RGCY 7 cut(s) 89, 116, 159, 170, 326, 393, 474
CviKI_1 RGCY 7 cut(s) 89, 116, 159, 170, 326, 393, 474
DdeI CTNAG 1 cut(s) 145
DpnI GATC 1 cut(s) 361
DpnII GATC 1 cut(s) 359
DraI TTTAAA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 49
EcoRI GAATTC 1 cut(s) 556
EcoT14I CCWWGG 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 7 cut(s) 12, 25, 39, 43, 427, 448, 550
FaqI GGGAC 1 cut(s) 328
FatI CATG 7 cut(s) 8, 21, 35, 39, 423, 444, 546
FauI CCCGC 2 cut(s) 212, 463
FokI GGATG 2 cut(s) 427, 462
HaeIII GGCC 1 cut(s) 474
HapII CCGG 1 cut(s) 479
Hin1II CATG 7 cut(s) 12, 25, 39, 43, 427, 448, 550
HincII GTYRAC 1 cut(s) 413
HindII GTYRAC 1 cut(s) 413
HinfI GANTC 1 cut(s) 432
HpaII CCGG 1 cut(s) 479
Hpy166II GTNNAC 1 cut(s) 413
Hpy188I TCNGA 1 cut(s) 567
Hpy188III TCNNGA 3 cut(s) 295, 384, 436
Hpy8I GTNNAC 1 cut(s) 413
HpyAV CCTTC 1 cut(s) 498
HpyCH4III ACNGT 1 cut(s) 417
HpyCH4V TGCA 2 cut(s) 39, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 471
HpyF3I CTNAG 1 cut(s) 145
Hsp92II CATG 7 cut(s) 12, 25, 39, 43, 427, 448, 550
Kzo9I GATC 1 cut(s) 359
LpnPI CCDG 2 cut(s) 369, 492
MaeIII GTNAC 1 cut(s) 24
MalI GATC 1 cut(s) 361
MboI GATC 1 cut(s) 359
MluCI AATT 6 cut(s) 181, 191, 228, 258, 298, 556
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 4 cut(s) 99, 356, 359, 401
Mph1103I ATGCAT 1 cut(s) 41
MseI TTAA 5 cut(s) 30, 128, 257, 528, 592
MspI CCGG 1 cut(s) 479
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 2 cut(s) 206, 471
NdeII GATC 1 cut(s) 359
NlaIII CATG 7 cut(s) 12, 25, 39, 43, 427, 448, 550
NlaIV GGNNCC 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 41
NspI RCATGY 4 cut(s) 12, 25, 39, 550
PaeI GCATGC 2 cut(s) 39, 550
PciI ACATGT 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PfeI GAWTC 1 cut(s) 432
PscI ACATGT 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 49, 472
SaqAI TTAA 5 cut(s) 30, 128, 257, 528, 592
Sau3AI GATC 1 cut(s) 359
Sau96I GGNCC 2 cut(s) 49, 472
SetI ASST 7 cut(s) 68, 72, 91, 118, 412, 490, 534
SinI GGWCC 1 cut(s) 49
SphI GCATGC 2 cut(s) 39, 550
Sse9I AATT 6 cut(s) 181, 191, 228, 258, 298, 556
SsiI CCGC 4 cut(s) 219, 237, 264, 470
SspI AATATT 1 cut(s) 582
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 417
TaqI TCGA 1 cut(s) 514
TasI AATT 6 cut(s) 181, 191, 228, 258, 298, 556
TfiI GAWTC 1 cut(s) 432
Tru1I TTAA 5 cut(s) 30, 128, 257, 528, 592
Tru9I TTAA 5 cut(s) 30, 128, 257, 528, 592
TspDTI ATGAA 4 cut(s) 192, 241, 514, 565
TspGWI ACGGA 3 cut(s) 62, 109, 149
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 3 cut(s) 181, 298, 556
XceI RCATGY 4 cut(s) 12, 25, 39, 550
Zsp2I ATGCAT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.