Rh5BG386200

Transmembrane amino acid transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006420
Physical Location & Seq
Forward (+)
61626655 .. 61627449
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG386200.1

Sequence Viewer

Length: 357 bp
ATGGAGTCGGACTCCCTCAAAGTAGAGAAGATAGAGAGCCAAATTCAACCACTAGAACCAAACCAAGGCACCACTTTTTTTCATACCCTGTTTCAATGGACTCAAACATATTATCGATCAGGTGTCGGCGGCGGGGCAATAATATTGTCATATGTGTCGGCGGCGGGAGCTCTCTCTTCTCTCCTCATCGTGGGATCGCTCGTATCTGTTGTAGTATCAGGAGTTGGCTTTCACGCACAAGGAGGTCAGTTGTGGAACATGAGTGGAATCCCGACAGCCTTGAGTTTCTACATTTTCTGCTTCGCGGGCCACTCGGTTCTACCTTCCATTTATATATCTATGAGACAGCGACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

118

Amino Acids

12.77

Weight (kDa)

6.89

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 49 - 117 1.8e-06 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AccII CGCG 1 cut(s) 305
AciI CCGC 5 cut(s) 129, 132, 161, 164, 305
AclWI GGATC 1 cut(s) 202
AcsI RAATTY 1 cut(s) 42
AfiI CCNNNNNNNGG 2 cut(s) 65, 190
AgsI TTSAA 2 cut(s) 47, 95
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 1 cut(s) 202
AoxI GGCC 1 cut(s) 307
ApoI RAATTY 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 307
BanI GGYRCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 1 cut(s) 53
BisI GCNGC 2 cut(s) 130, 162
BlsI GCNGC 2 cut(s) 131, 163
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 70
BplI GAGNNNNNCTC 1 cut(s) 28
BpuEI CTTGAG 1 cut(s) 301
Bsa29I ATCGAT 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 190
BseCI ATCGAT 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 65, 190
BseRI GAGGAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 305
BshFI GGCC 1 cut(s) 309
BshNI GGYRCC 1 cut(s) 68
BshVI ATCGAT 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 65, 190
BsmAI GTCTC 1 cut(s) 337
BsnI GGCC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 116, 194
BspACI CCGC 5 cut(s) 129, 132, 161, 164, 305
BspANI GGCC 1 cut(s) 309
BspDI ATCGAT 1 cut(s) 115
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 2 cut(s) 116, 194
BssT1I CCWWGG 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 307
BstFNI CGCG 1 cut(s) 305
BstKTI GATC 2 cut(s) 119, 197
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 2 cut(s) 116, 194
BstMWI GCNNNNNNNGC 2 cut(s) 167, 306
BstUI CGCG 1 cut(s) 305
Bsu15I ATCGAT 1 cut(s) 115
BsuRI GGCC 1 cut(s) 309
BsuTUI ATCGAT 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 307
ClaI ATCGAT 1 cut(s) 115
CviAII CATG 1 cut(s) 259
CviJI RGCY 5 cut(s) 39, 170, 228, 278, 309
CviKI_1 RGCY 5 cut(s) 39, 170, 228, 278, 309
DpnI GATC 2 cut(s) 118, 196
DpnII GATC 2 cut(s) 116, 194
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 1 cut(s) 262
FaiI YATR 8 cut(s) 84, 109, 151, 153, 260, 333, 335, 341
FatI CATG 1 cut(s) 258
FauI CCCGC 3 cut(s) 125, 157, 298
FauNDI CATATG 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 130, 162
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 2 cut(s) 130, 162
FspBI CTAG 1 cut(s) 53
GluI GCNGC 2 cut(s) 130, 162
HaeIII GGCC 1 cut(s) 309
Hin1II CATG 1 cut(s) 262
HinfI GANTC 4 cut(s) 5, 11, 100, 267
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 2 cut(s) 219, 271
HpyAV CCTTC 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 306
Hsp92II CATG 1 cut(s) 262
Kzo9I GATC 2 cut(s) 116, 194
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 3 cut(s) 101, 105, 204
MaeI CTAG 1 cut(s) 53
MalI GATC 2 cut(s) 118, 196
MboI GATC 2 cut(s) 116, 194
MboII GAAGA 2 cut(s) 40, 168
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 1 cut(s) 42
MlyI GAGTC 3 cut(s) 5, 14, 94
MnlI CCTC 3 cut(s) 26, 194, 236
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 167, 306
NdeI CATATG 1 cut(s) 151
NdeII GATC 2 cut(s) 116, 194
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 267
PkrI GCNGC 2 cut(s) 131, 163
PleI GAGTC 3 cut(s) 5, 13, 94
PpsI GAGTC 3 cut(s) 5, 13, 94
Psp124BI GAGCTC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 307
SacI GAGCTC 1 cut(s) 172
SatI GCNGC 2 cut(s) 130, 162
Sau3AI GATC 2 cut(s) 116, 194
Sau96I GGNCC 1 cut(s) 307
SchI GAGTC 3 cut(s) 5, 14, 94
SduI GDGCHC 1 cut(s) 172
SetI ASST 4 cut(s) 124, 172, 247, 325
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 1 cut(s) 42
SsiI CCGC 5 cut(s) 129, 132, 161, 164, 305
SspI AATATT 1 cut(s) 144
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 1 cut(s) 172
StyI CCWWGG 1 cut(s) 64
TaqI TCGA 1 cut(s) 115
TasI AATT 1 cut(s) 42
TauI GCSGC 2 cut(s) 132, 164
TfiI GAWTC 1 cut(s) 267
TspDTI ATGAA 1 cut(s) 71
XapI RAATTY 1 cut(s) 42
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.