RchiOBHm_Chr5g0057281

Transmembrane amino acid transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006420
Physical Location & Seq
Reverse (-)
61180778 .. 61181930
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33406

Sequence Viewer

Length: 1053 bp
ATGATGACATGTTATACTAGCATGCTACTTAAAACTTGCATGGATGTGGACCCATCAATAAACACCTACCTCGATATTATCGAACGAGCTTTTGGCAATAAATGGAGGATTATAGCTTCTGTGTTTTTAAACACAGAACTATACTTAGTTGCTCTTGGCTTGGTAATAGCCGAAAGTGACAATTTACAAAAATTATTCCCCACATTCGCCATTAAGCTTGGCGGCGGGGCAATAACAATTGGCTGTAGAAAGACTTTCGTCTTAATTACGGCTTGTATTACTTTACCGACAATGCTGCTCACTGATTTGAGCATATTGTCGTATGTGTCAGCCATCGGAGTTCTTTCTTCCCTCCTCATCATGGGATCACTCATATCTGTTGGACTATTAGGAGTTGGCTTTCACGCACAAGGAGGTCAGCTGTGGAACATGAGTGGACTCCCGACAGCTGTGAGTTTCTACATTTTCTGCTTCGCGGGCCACCCAGTTCTACCTTCCATTTATATGTCTATGAGACATCGACATCAGTTCATTAAGGTGTTGATGATCAGCTTTCTTCTCACCACTACAACTTGCTTGGTTACAGCTGTGATTGGTTATCTTATGTACGGAGGAGGAGTGAAATCTCAGATAACCCTCAACCTCCCCACCTCACAAGCCAGTGCGAAAATCGCTATTTATTCATTACTATTAATACCAATTACTCGCTATGCACTGATGGTTACCCCAGTAGCTTCAGCTATTGAAGGTCTCCTGCCTCAGAACTACCAAAATAGGAGTTTAATTCAGAGAGTTATTAGGCTAGTAATTTTGGCTAGCAATACCTTATTAGCCTTTTTCTTTCCCTATTTTGAGACCCTAATGGGCTTACTGGGATCCATTTTTGTTGTCTCAGCATCTTTTATACTGCCTTGTGCATGCTACATCAAGCTTACTCATGGCTTTAGTACTTGGAGTTGCAAGTTAGTAGTCACTGTAGCTATAATGGTGTTTGGTGTTCTTGCTGGAATTCTAGGCACATATACAACCATTGTTGATCTTGTCCACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

350

Amino Acids

38.15

Weight (kDa)

9.03

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 2 - 344 3.9e-50 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 476
AciI CCGC 3 cut(s) 222, 225, 476
AclWI GGATC 3 cut(s) 373, 870, 883
AcsI RAATTY 1 cut(s) 1008
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 2 cut(s) 608, 949
AfiI CCNNNNNNNGG 1 cut(s) 361
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 1 cut(s) 746
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
Alw26I GTCTC 4 cut(s) 508, 755, 848, 895
AlwI GGATC 3 cut(s) 373, 870, 883
AoxI GGCC 1 cut(s) 478
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 1008
AseI ATTAAT 1 cut(s) 692
AspS9I GGNCC 2 cut(s) 49, 478
AsuHPI GGTGA 1 cut(s) 553
AsuNHI GCTAGC 1 cut(s) 815
AvaII GGWCC 1 cut(s) 49
BamHI GGATCC 1 cut(s) 875
BbvI GCAGC 1 cut(s) 282
BccI CCATC 3 cut(s) 61, 341, 712
BceAI ACGGC 1 cut(s) 285
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BclI TGATCA 1 cut(s) 546
BcoDI GTCTC 4 cut(s) 508, 755, 848, 895
BfaI CTAG 4 cut(s) 18, 803, 816, 1013
BfmI CTRYAG 2 cut(s) 244, 975
BisI GCNGC 2 cut(s) 223, 296
BlsI GCNGC 2 cut(s) 224, 297
BmcAI AGTACT 1 cut(s) 949
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 49, 478
BmiI GGNNCC 2 cut(s) 51, 877
BmrI ACTGGG 3 cut(s) 479, 722, 881
BmsI GCATC 1 cut(s) 905
BmtI GCTAGC 1 cut(s) 819
BmuI ACTGGG 3 cut(s) 479, 722, 881
BoxI GACNNNNGTC 1 cut(s) 257
BsaI GGTCTC 2 cut(s) 755, 848
BsaXI ACNNNNNCTCC 2 cut(s) 603, 633
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse1I ACTGG 4 cut(s) 485, 660, 728, 876
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 3 cut(s) 641, 773, 906
BseNI ACTGG 4 cut(s) 485, 660, 728, 876
BseRI GAGGAG 3 cut(s) 344, 627, 630
BseXI GCAGC 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 476
BshFI GGCC 1 cut(s) 480
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 4 cut(s) 508, 755, 848, 895
BsnI GGCC 1 cut(s) 480
Bso31I GGTCTC 2 cut(s) 755, 848
Bsp143I GATC 4 cut(s) 365, 546, 875, 1036
BspACI CCGC 3 cut(s) 222, 225, 476
BspANI GGCC 1 cut(s) 480
BspCNI CTCAG 3 cut(s) 640, 772, 905
BspFNI CGCG 1 cut(s) 476
BspLI GGNNCC 2 cut(s) 51, 877
BspOI GCTAGC 1 cut(s) 819
BspPI GGATC 3 cut(s) 373, 870, 883
BspTNI GGTCTC 2 cut(s) 755, 848
BsrI ACTGG 4 cut(s) 485, 660, 728, 876
BssMI GATC 4 cut(s) 365, 546, 875, 1036
Bst4CI ACNGT 1 cut(s) 976
BstC8I GCNNGC 4 cut(s) 23, 478, 817, 919
BstDEI CTNAG 4 cut(s) 145, 627, 759, 892
BstEII GGTNACC 1 cut(s) 721
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 476
BstKTI GATC 4 cut(s) 368, 549, 878, 1039
BstMAI GTCTC 4 cut(s) 508, 755, 848, 895
BstMBI GATC 4 cut(s) 365, 546, 875, 1036
BstMWI GCNNNNNNNGC 2 cut(s) 477, 671
BstNSI RCATGY 3 cut(s) 12, 25, 921
BstPAI GACNNNNGTC 1 cut(s) 257
BstPI GGTNACC 1 cut(s) 721
BstSFI CTRYAG 2 cut(s) 244, 975
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 875
BstYI RGATCY 1 cut(s) 875
BsuRI GGCC 1 cut(s) 480
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 4 cut(s) 300, 667, 713, 972
Cac8I GCNNGC 4 cut(s) 23, 478, 817, 919
Cfr13I GGNCC 2 cut(s) 49, 478
Csp6I GTAC 2 cut(s) 607, 948
CviAII CATG 7 cut(s) 9, 22, 40, 361, 430, 918, 938
CviQI GTAC 2 cut(s) 607, 948
DdeI CTNAG 4 cut(s) 145, 627, 759, 892
DpnI GATC 4 cut(s) 367, 548, 877, 1038
DpnII GATC 4 cut(s) 365, 546, 875, 1036
DraI TTTAAA 1 cut(s) 129
Eco31I GGTCTC 2 cut(s) 755, 848
Eco47I GGWCC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 720
Eco91I GGTNACC 1 cut(s) 721
EcoO65I GGTNACC 1 cut(s) 721
EcoRI GAATTC 1 cut(s) 1008
FaeI CATG 7 cut(s) 12, 25, 43, 364, 433, 921, 941
FatI CATG 7 cut(s) 8, 21, 39, 360, 429, 917, 937
FauI CCCGC 2 cut(s) 218, 469
FbaI TGATCA 1 cut(s) 546
Fnu4HI GCNGC 2 cut(s) 223, 296
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 223, 296
FspBI CTAG 4 cut(s) 18, 803, 816, 1013
GluI GCNGC 2 cut(s) 223, 296
HaeIII GGCC 1 cut(s) 480
Hin1II CATG 7 cut(s) 12, 25, 43, 364, 433, 921, 941
HindIII AAGCTT 2 cut(s) 215, 929
HinfI GANTC 1 cut(s) 438
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 3 cut(s) 49, 437, 1045
Hpy188I TCNGA 4 cut(s) 338, 630, 762, 789
Hpy188III TCNNGA 1 cut(s) 442
Hpy8I GTNNAC 3 cut(s) 49, 437, 1045
HpyAV CCTTC 2 cut(s) 504, 740
HpyCH4III ACNGT 1 cut(s) 976
HpyCH4V TGCA 4 cut(s) 39, 713, 917, 960
HpyF10VI GCNNNNNNNGC 2 cut(s) 477, 671
HpyF3I CTNAG 4 cut(s) 145, 627, 759, 892
Hsp92II CATG 7 cut(s) 12, 25, 43, 364, 433, 921, 941
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 4 cut(s) 365, 546, 875, 1036
LpnPI CCDG 6 cut(s) 498, 673, 741, 767, 857, 990
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 905
MaeI CTAG 4 cut(s) 18, 803, 816, 1013
MaeIII GTNAC 4 cut(s) 176, 580, 721, 970
MalI GATC 4 cut(s) 367, 548, 877, 1038
MboI GATC 4 cut(s) 365, 546, 875, 1036
MboII GAAGA 2 cut(s) 339, 548
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 1 cut(s) 875
MluCI AATT 8 cut(s) 181, 191, 237, 264, 699, 783, 807, 1008
MlyI GAGTC 1 cut(s) 432
MmeI TCCRAC 1 cut(s) 361
MseI TTAA 8 cut(s) 30, 128, 213, 263, 534, 692, 782, 1051
MslI CAYNNNNRTG 3 cut(s) 44, 503, 536
MspA1I CMGCKG 3 cut(s) 421, 449, 587
MunI CAATTG 1 cut(s) 237
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 2 cut(s) 477, 671
NdeII GATC 4 cut(s) 365, 546, 875, 1036
NheI GCTAGC 1 cut(s) 815
NlaIII CATG 7 cut(s) 12, 25, 43, 364, 433, 921, 941
NlaIV GGNNCC 2 cut(s) 51, 877
NmuCI GTSAC 2 cut(s) 176, 970
NspI RCATGY 3 cut(s) 12, 25, 921
PaeI GCATGC 2 cut(s) 25, 921
PciI ACATGT 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PkrI GCNGC 2 cut(s) 224, 297
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
PscI ACATGT 1 cut(s) 8
PshAI GACNNNNGTC 1 cut(s) 257
PshBI ATTAAT 1 cut(s) 692
PspEI GGTNACC 1 cut(s) 721
PspN4I GGNNCC 2 cut(s) 51, 877
PspPI GGNCC 2 cut(s) 49, 478
PsuI RGATCY 1 cut(s) 875
PvuII CAGCTG 3 cut(s) 421, 449, 587
RsaI GTAC 2 cut(s) 608, 949
RsaNI GTAC 2 cut(s) 607, 948
RseI CAYNNNNRTG 3 cut(s) 44, 503, 536
SaqAI TTAA 8 cut(s) 30, 128, 213, 263, 534, 692, 782, 1051
SatI GCNGC 2 cut(s) 223, 296
Sau3AI GATC 4 cut(s) 365, 546, 875, 1036
Sau96I GGNCC 2 cut(s) 49, 478
ScaI AGTACT 1 cut(s) 949
SchI GAGTC 1 cut(s) 432
SfaNI GCATC 1 cut(s) 905
SfcI CTRYAG 2 cut(s) 244, 975
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 3 cut(s) 44, 503, 536
SphI GCATGC 2 cut(s) 25, 921
Sse9I AATT 8 cut(s) 181, 191, 237, 264, 699, 783, 807, 1008
SsiI CCGC 3 cut(s) 222, 225, 476
SspMI CTAG 4 cut(s) 18, 803, 816, 1013
TaaI ACNGT 1 cut(s) 976
TaqI TCGA 3 cut(s) 72, 81, 520
TasI AATT 8 cut(s) 181, 191, 237, 264, 699, 783, 807, 1008
TatI WGTACW 1 cut(s) 947
TauI GCSGC 1 cut(s) 225
Tru1I TTAA 8 cut(s) 30, 128, 213, 263, 534, 692, 782, 1051
Tru9I TTAA 8 cut(s) 30, 128, 213, 263, 534, 692, 782, 1051
TscAI CASTG 4 cut(s) 307, 667, 720, 979
TseFI GTSAC 2 cut(s) 176, 970
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 2 cut(s) 176, 970
TspDTI ATGAA 2 cut(s) 520, 672
TspGWI ACGGA 1 cut(s) 624
TspRI CASTG 4 cut(s) 307, 667, 720, 979
VpaK11BI GGWCC 1 cut(s) 49
VspI ATTAAT 1 cut(s) 692
XapI RAATTY 1 cut(s) 1008
XceI RCATGY 3 cut(s) 12, 25, 921
XspI CTAG 4 cut(s) 18, 803, 816, 1013
ZrmI AGTACT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.