Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006420

Physical Location & Seq

Genomic Coordinates Reverse (-)

35646377 .. 35646970

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0305900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGATCAAGGCTGTGACTCAATCTATCCCTACATATGTCATGAGTTGTTTTGAACTCCCAAAGCAGTTGTGTTGGGAGATGCATAGCTTAATGGCGAAATTCTGGTGGGGTGACAATTTGAATGAAAAGAAGATCCATTTGCTAGCTTGGGAGAAGTTGTGTGTACCTAAAGCGGAAGGAGGTCTAGGATTTAGGAATATGGTGCTCTTTAACCAAGCTTTACTTGCTAAGCAAGGTTGGAGAATTTTACAATATCCGGACTCTCTTATCGCTTCACTCTATAAGGCGAAATACTTCCCGGATTGTGGTTTTATGGATGCTAAGTCTGTGAATGGAGGCTCTTATGCGTGGAGGAGTATTGTTCATGGTAGAGAATTGTTGAGGAAAGGGCTTCGTTTCCAGGTCGGGAATGGCAATAGGATTAGAGTCTGGTCTGATCCGTGGGTACCTCTTCCGTTCAGTTTCAAACCTATCTCAAGACCACCGGATGGGCTGGAAGATTTAAGGGTGGTGGAGATACTTGATAATGAATTGCATGAGTGGAATGTCCCGTTACTACGGGAACTCTTTACACCCTGTTTGGACCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

197

Amino Acids

22.82

Weight (kDa)

8.97

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006420)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G137000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0025941 RchiOBHm_Chr5g0025971 RchiOBHm_Chr5g0057141 RchiOBHm_Chr5g0057171 RchiOBHm_Chr5g0057201 RchiOBHm_Chr5g0057281 RchiOBHm_Chr5g0057311 RchiOBHm_Chr5g0057321 RchiOBHm_Chr5g0057381
rosa_laevigata	RLG00000035151
rosa_multiflora	Rmu_sc0001334.1_g000013 Rmu_sc0001334.1_g000026
rosa_roxburghii	Rroxscaffold_1G00023040 Rroxscaffold_1G00023080 Rroxscaffold_1G00025370 Rroxscaffold_1G00053300
rosa_rugosa	Rorug05G0305900 Rorug05G0306900 Rorug05G0306900 Rorug05G0307000
rosa_samantha	Rh5BG386200 Rh5DG180600 Rh5DG400200
rosa_wichuraiana	Rw5G035350 Rw5G035400 Rw5G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	2 cut(s)	127, 431
AcsI	RAATTY	2 cut(s)	98, 243
AfaI	GTAC	2 cut(s)	165, 447
AfiI	CCNNNNNNNGG	2 cut(s)	305, 488
AgsI	TTSAA	3 cut(s)	53, 121, 466
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	3 cut(s)	87, 146, 218
AluI	AGCT	3 cut(s)	87, 146, 218
Alw21I	GWGCWC	1 cut(s)	207
AlwI	GGATC	2 cut(s)	127, 431
Aor13HI	TCCGGA	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	98, 243
Asp700I	GAANNNNTTC	1 cut(s)	293
Asp718I	GGTACC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	583
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	122
AsuNHI	GCTAGC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	1 cut(s)	482
BciT130I	CCWGG	1 cut(s)	401
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	299
BfaI	CTAG	2 cut(s)	143, 185
BlpI	GCTNAGC	1 cut(s)	228
Bme1390I	CCNGG	2 cut(s)	299, 401
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	2 cut(s)	447, 585
BmrFI	CCNGG	2 cut(s)	299, 401
BmsI	GCATC	2 cut(s)	69, 307
BmtI	GCTAGC	1 cut(s)	146
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	460
BpuMI	CCSGG	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	440
BsaWI	WCCGGW	2 cut(s)	256, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 488
BseAI	TCCGGA	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	2 cut(s)	322, 493
BseLI	CCNNNNNNNGG	2 cut(s)	305, 488
BseRI	GAGGAG	1 cut(s)	367
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	257, 299, 485
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	305, 488
BsmFI	GGGAC	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp13I	TCCGGA	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	3, 132, 436
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	1 cut(s)	173
BspEI	TCCGGA	1 cut(s)	256
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	447, 585
BspOI	GCTAGC	1 cut(s)	146
BspPI	GGATC	2 cut(s)	127, 431
BspT107I	GGYRCC	1 cut(s)	445
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	3 cut(s)	3, 132, 436
Bst2UI	CCWGG	1 cut(s)	401
Bst6I	CTCTTC	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	228, 321
BstDSI	CCRYGG	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	322, 493
BstKTI	GATC	3 cut(s)	6, 135, 439
BstMBI	GATC	3 cut(s)	3, 132, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	297, 399
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	440
BtsCI	GGATG	2 cut(s)	322, 493
Cac8I	GCNNGC	1 cut(s)	144
CciI	TCATGA	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	164, 446
CviAII	CATG	3 cut(s)	40, 365, 536
CviJI	RGCY	7 cut(s)	11, 87, 146, 218, 339, 391, 493
CviKI_1	RGCY	7 cut(s)	11, 87, 146, 218, 339, 391, 493
CviQI	GTAC	2 cut(s)	164, 446
DdeI	CTNAG	2 cut(s)	228, 321
DpnI	GATC	3 cut(s)	5, 134, 438
DpnII	GATC	3 cut(s)	3, 132, 436
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	399
EcoT22I	ATGCAT	1 cut(s)	84
FaeI	CATG	3 cut(s)	43, 368, 539
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	3 cut(s)	39, 364, 535
FauNDI	CATATG	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	2 cut(s)	329, 500
FspBI	CTAG	2 cut(s)	143, 185
HapII	CCGG	3 cut(s)	257, 299, 485
Hin1II	CATG	3 cut(s)	43, 368, 539
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	3 cut(s)	16, 260, 426
HpaII	CCGG	3 cut(s)	257, 299, 485
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	4 cut(s)	40, 257, 406, 477
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	82, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	2 cut(s)	228, 321
Hsp92II	CATG	3 cut(s)	43, 368, 539
Kpn2I	TCCGGA	1 cut(s)	256
KpnI	GGTACC	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 132, 436
LpnPI	CCDG	9 cut(s)	88, 270, 312, 386, 413, 415, 479, 498, 589
LweI	GCATC	2 cut(s)	69, 307
MaeI	CTAG	2 cut(s)	143, 185
MaeIII	GTNAC	3 cut(s)	13, 110, 552
MalI	GATC	3 cut(s)	5, 134, 438
MboI	GATC	3 cut(s)	3, 132, 436
MboII	GAAGA	3 cut(s)	142, 443, 509
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	5 cut(s)	98, 115, 243, 374, 530
MlyI	GAGTC	3 cut(s)	10, 254, 435
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	5 cut(s)	173, 329, 345, 375, 459
Mph1103I	ATGCAT	1 cut(s)	84
MroI	TCCGGA	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	3 cut(s)	89, 210, 503
MspI	CCGG	3 cut(s)	257, 299, 485
MspR9I	CCNGG	2 cut(s)	299, 401
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	299
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	3 cut(s)	3, 132, 436
NheI	GCTAGC	1 cut(s)	142
NlaIII	CATG	3 cut(s)	43, 368, 539
NlaIV	GGNNCC	2 cut(s)	447, 585
NmuCI	GTSAC	2 cut(s)	13, 110
NsiI	ATGCAT	1 cut(s)	84
PagI	TCATGA	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	488
PfoI	TCCNGGA	1 cut(s)	297
PleI	GAGTC	3 cut(s)	10, 254, 434
PpsI	GAGTC	3 cut(s)	10, 254, 434
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	2 cut(s)	447, 585
PspPI	GGNCC	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	2 cut(s)	165, 447
RsaNI	GTAC	2 cut(s)	164, 446
SaqAI	TTAA	3 cut(s)	89, 210, 503
Sau3AI	GATC	3 cut(s)	3, 132, 436
Sau96I	GGNCC	1 cut(s)	583
SchI	GAGTC	3 cut(s)	10, 254, 435
ScrFI	CCNGG	2 cut(s)	299, 401
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	9 cut(s)	89, 148, 169, 184, 220, 238, 405, 451, 472
SfaNI	GCATC	2 cut(s)	69, 307
SinI	GGWCC	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
Sse9I	AATT	5 cut(s)	98, 115, 243, 374, 530
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	2 cut(s)	143, 185
StyD4I	CCNGG	2 cut(s)	297, 399
TasI	AATT	5 cut(s)	98, 115, 243, 374, 530
Tru1I	TTAA	3 cut(s)	89, 210, 503
Tru9I	TTAA	3 cut(s)	89, 210, 503
TseFI	GTSAC	2 cut(s)	13, 110
Tsp45I	GTSAC	2 cut(s)	13, 110
TspDTI	ATGAA	3 cut(s)	138, 353, 543
TspGWI	ACGGA	2 cut(s)	429, 444
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	2 cut(s)	98, 243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	2 cut(s)	143, 185
Zsp2I	ATGCAT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.