Rmu_sc0001334.1_g000013

Transmembrane amino acid transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001334.1
OG0006420
Physical Location & Seq
Reverse (-)
102837 .. 103698
862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001334.1_g000013.1.cds

Sequence Viewer

Length: 762 bp
atgctactcactgatttgagcatattgtcgtatgtgtcagccatgggagttctttcttccctcctcatcatgggatcactcatatatgttggactatcaggagtcggctttcacacacaaggaggtcagctgtggaacatgagtggactcccgacagctatgagtttctacattttctgcttcgcgggccacccagttctaccttccatttatatgtctatgagacatcgacatcagttcattaaggtgttgatgatcagctttcttctcaccactacaacttgcttggttacagctgtgattggttatcttatgtacggaggagaagtgaaatctcagataaccctcaacctccccacctcacaagccagtgcaaaaatcactatttattcattactattaataccaattactcgctatgcactgatggttaccccagtagcttcagctattgaaggtctcctgcctcagaactaccaaaataggagtttaattcagagagttattaggctagtaattttggctagcaataccttattagcctttttctttccctattttgagaccctaatgggcttactgggatccatttttgttgtctcagcatcttttttactgccttgtgcatgctacatcaagcttactcatggctttagtacttggagttgcaagttagtagtcgttgtagctataatggtgtttggtgttcttgccggaattctaggcacatatacagccattgttgatcttgtaagccattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

253

Amino Acids

27.6

Weight (kDa)

9.15

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 185
AciI CCGC 1 cut(s) 185
AclWI GGATC 3 cut(s) 82, 579, 592
AcsI RAATTY 1 cut(s) 717
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 2 cut(s) 317, 658
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 455
AluBI AGCT 8 cut(s) 130, 158, 261, 296, 443, 449, 640, 689
AluI AGCT 8 cut(s) 130, 158, 261, 296, 443, 449, 640, 689
Alw26I GTCTC 4 cut(s) 217, 464, 557, 604
AlwI GGATC 3 cut(s) 82, 579, 592
AoxI GGCC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 717
AseI ATTAAT 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 262
AsuNHI GCTAGC 1 cut(s) 524
BamHI GGATCC 1 cut(s) 584
BccI CCATC 1 cut(s) 421
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 4 cut(s) 217, 464, 557, 604
BfaI CTAG 3 cut(s) 512, 525, 722
BmcAI AGTACT 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 586
BmrI ACTGGG 3 cut(s) 188, 431, 590
BmsI GCATC 1 cut(s) 614
BmtI GCTAGC 1 cut(s) 528
BmuI ACTGGG 3 cut(s) 188, 431, 590
BsaI GGTCTC 2 cut(s) 464, 557
BsaJI CCNNGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 4 cut(s) 194, 369, 437, 585
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 3 cut(s) 350, 482, 615
BseNI ACTGG 4 cut(s) 194, 369, 437, 585
BseRI GAGGAG 2 cut(s) 53, 336
Bsh1236I CGCG 1 cut(s) 185
BshFI GGCC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 714
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 4 cut(s) 217, 464, 557, 604
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 2 cut(s) 464, 557
Bsp143I GATC 4 cut(s) 74, 255, 584, 745
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 1 cut(s) 185
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 3 cut(s) 349, 481, 614
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 586
BspOI GCTAGC 1 cut(s) 528
BspPI GGATC 3 cut(s) 82, 579, 592
BspTNI GGTCTC 2 cut(s) 464, 557
BsrI ACTGG 4 cut(s) 194, 369, 437, 585
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 4 cut(s) 74, 255, 584, 745
BssT1I CCWWGG 1 cut(s) 42
BstC8I GCNNGC 3 cut(s) 187, 526, 628
BstDEI CTNAG 3 cut(s) 336, 468, 601
BstDSI CCRYGG 1 cut(s) 42
BstEII GGTNACC 1 cut(s) 430
BstFNI CGCG 1 cut(s) 185
BstKTI GATC 4 cut(s) 77, 258, 587, 748
BstMAI GTCTC 4 cut(s) 217, 464, 557, 604
BstMBI GATC 4 cut(s) 74, 255, 584, 745
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 630
BstPI GGTNACC 1 cut(s) 430
BstUI CGCG 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 584
BstYI RGATCY 1 cut(s) 584
BsuRI GGCC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 42
BtsIMutI CAGTG 3 cut(s) 9, 376, 422
Cac8I GCNNGC 3 cut(s) 187, 526, 628
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 316, 657
CviAII CATG 5 cut(s) 43, 70, 139, 627, 647
CviQI GTAC 2 cut(s) 316, 657
DdeI CTNAG 3 cut(s) 336, 468, 601
DpnI GATC 4 cut(s) 76, 257, 586, 747
DpnII GATC 4 cut(s) 74, 255, 584, 745
Eco130I CCWWGG 1 cut(s) 42
Eco31I GGTCTC 2 cut(s) 464, 557
Eco57I CTGAAG 1 cut(s) 429
Eco91I GGTNACC 1 cut(s) 430
EcoO65I GGTNACC 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 717
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 5 cut(s) 46, 73, 142, 630, 650
FatI CATG 5 cut(s) 42, 69, 138, 626, 646
FauI CCCGC 1 cut(s) 178
FbaI TGATCA 1 cut(s) 255
FspBI CTAG 3 cut(s) 512, 525, 722
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 714
Hin1II CATG 5 cut(s) 46, 73, 142, 630, 650
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 2 cut(s) 102, 147
HpaII CCGG 1 cut(s) 714
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 3 cut(s) 339, 471, 498
Hpy188III TCNNGA 2 cut(s) 99, 151
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 213, 449
HpyCH4V TGCA 4 cut(s) 374, 422, 626, 669
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 3 cut(s) 336, 468, 601
Hsp92II CATG 5 cut(s) 46, 73, 142, 630, 650
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 4 cut(s) 74, 255, 584, 745
LpnPI CCDG 7 cut(s) 84, 207, 382, 450, 476, 566, 727
LweI GCATC 1 cut(s) 614
MaeI CTAG 3 cut(s) 512, 525, 722
MaeIII GTNAC 2 cut(s) 289, 430
MalI GATC 4 cut(s) 76, 257, 586, 747
MboI GATC 4 cut(s) 74, 255, 584, 745
MboII GAAGA 2 cut(s) 48, 257
MflI RGATCY 1 cut(s) 584
MluCI AATT 4 cut(s) 408, 492, 516, 717
MlyI GAGTC 2 cut(s) 111, 141
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 8 cut(s) 71, 74, 116, 314, 356, 362, 370, 477
MseI TTAA 4 cut(s) 243, 401, 491, 760
MslI CAYNNNNRTG 2 cut(s) 212, 245
MspA1I CMGCKG 2 cut(s) 130, 296
MspI CCGG 1 cut(s) 714
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 186
NcoI CCATGG 1 cut(s) 42
NdeII GATC 4 cut(s) 74, 255, 584, 745
NheI GCTAGC 1 cut(s) 524
NlaIII CATG 5 cut(s) 46, 73, 142, 630, 650
NlaIV GGNNCC 1 cut(s) 586
NspI RCATGY 1 cut(s) 630
PaeI GCATGC 1 cut(s) 630
PleI GAGTC 2 cut(s) 110, 141
PpsI GAGTC 2 cut(s) 110, 141
PshBI ATTAAT 1 cut(s) 401
PspEI GGTNACC 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 586
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 584
PvuII CAGCTG 2 cut(s) 130, 296
RsaI GTAC 2 cut(s) 317, 658
RsaNI GTAC 2 cut(s) 316, 657
RseI CAYNNNNRTG 2 cut(s) 212, 245
SaqAI TTAA 4 cut(s) 243, 401, 491, 760
Sau3AI GATC 4 cut(s) 74, 255, 584, 745
Sau96I GGNCC 1 cut(s) 187
ScaI AGTACT 1 cut(s) 658
SchI GAGTC 2 cut(s) 111, 141
SfaNI GCATC 1 cut(s) 614
SmiMI CAYNNNNRTG 2 cut(s) 212, 245
SphI GCATGC 1 cut(s) 630
Sse9I AATT 4 cut(s) 408, 492, 516, 717
SsiI CCGC 1 cut(s) 185
SspMI CTAG 3 cut(s) 512, 525, 722
StyI CCWWGG 1 cut(s) 42
TaqI TCGA 1 cut(s) 229
TasI AATT 4 cut(s) 408, 492, 516, 717
TatI WGTACW 1 cut(s) 656
Tru1I TTAA 4 cut(s) 243, 401, 491, 760
Tru9I TTAA 4 cut(s) 243, 401, 491, 760
TscAI CASTG 3 cut(s) 16, 376, 429
TspDTI ATGAA 2 cut(s) 229, 381
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 3 cut(s) 16, 376, 429
VspI ATTAAT 1 cut(s) 401
XapI RAATTY 1 cut(s) 717
XceI RCATGY 1 cut(s) 630
XspI CTAG 3 cut(s) 512, 525, 722
ZrmI AGTACT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.