Rorug05G0306900

Transmembrane amino acid transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006420
Physical Location & Seq
Reverse (-)
35928804 .. 35934424
5621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0306900.1

Sequence Viewer

Length: 1347 bp
ATGTCATATAGATCTAAATTCCTGATAAAGAGCAAGAGCAAGAGCAAGGGTGCCAAGAATGTGGATGAAGAAGACAAGGTGGAGAGAGGAAGAAAAGAGATTATTCAGGGCTCTCTCTTGGTAGCTGCAGGGAAGCGATTGATGAGCACTCTGCGCCAGGAAAAGAAAGCCTTCATTCCGGACGATCATCGCTCTCTATACCTCTGCTTCGGTGAGTACGAAGAGGGCAGCAAGGTGTCCTACACCATTTTATCAGCCAACTTGCACCAATTGTTTTCTGCTGGTTCTTCTCCACGGCAATTGCAGCTGGTGACTAAGTTTTCCGGTGATGGTCTTCCCCGCTTTATGGGTTGCGGCGTTTGGGGCTCCAAAATTCTCCTTGGGGGTGGCGCAAAACCAGCTTATTTGCATTGTCCGAGTCGAGGCCAGCCAGCTAGTGGGTATTTTATGCATCACGAGGTCAGAAAGATATATTGTTTTGAGACTACGGAGGAGACTCAGGTGCCCATGCCGCTCCCGAAGATGTTGAAAGGGAACATTCAACCCTTGCTAGTGGAGGTGAATGGCAAACTCTACGCTCTTGGTAAATCATTACCCTCTTTTGAAATGTTTGACGGCAATGATTGGTCTGAGTTGGCACCACCTCCACACGGAACTTATTTGTGTTATCCTTTTACACACTCAAACCCAGCTTGTCAGTTCGATATATACTATGCAGTTGCAGGCACAAATATATTGATTTTTTATGGTGGTTCAAGCTTTCGTTTTGACACAGCTGACCCCAACCAAGGATGGAGAAGACTAATGTCAGCCGATCAATTCTTTTTCAATCAATTCTGTTTTAAGGGCACATGTTTAGTTGTGAATGATGGTAAACAATTTGTGCTTTTCACATTCCAGCCCTCTGATGGTCAGCACATATCAGTGCATCTGATTTCATATGACTTTGATAACATCACACAAGACTACAGTCGTATGCAACATCCTCCATACTTGATGGAATACAAGGATGATCGCCTTGGTGATCTTCCATTACCCAATTATCGGCTGGTACACCTAGGAGATAACATTGTCTGCCTTCTTATGTCTGAACATCTCCCCAGTGGAGTGGATGAGAGGGAGAAGAAGATGATTAGGTGTGTTGAATTCACCGCATTCACATTCAAAGTCAGAGACAATGCTGGACTATCCTTAAAAATCAGATTCCTGCCTCGTACCCCAAAGCTCATATATGATGATGACAATGATGATGATATGGACGTGGCTTCTAGGGCTGGACAGATGCTTGGTGCCTTCTTGTTGGAAAATTCTCAAGTGAACAAGGAGGACCTTGCAGCAGAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

448

Amino Acids

50.72

Weight (kDa)

6.68

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 158 - 393 5.1e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 50, 502, 637, 1289
AccB7I CCANNNNNTGG 1 cut(s) 437
AccBSI CCGCTC 1 cut(s) 514
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 4 cut(s) 340, 354, 512, 1152
AcsI RAATTY 4 cut(s) 17, 372, 1145, 1306
AfaI GTAC 3 cut(s) 218, 1053, 1216
AfiI CCNNNNNNNGG 7 cut(s) 346, 422, 437, 650, 788, 908, 1044
AflIII ACRYGT 1 cut(s) 851
AgsI TTSAA 7 cut(s) 529, 542, 605, 756, 829, 1145, 1165
AjiI CACGTC 1 cut(s) 1261
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 8 cut(s) 125, 307, 401, 434, 692, 759, 776, 1225
AluI AGCT 8 cut(s) 125, 307, 401, 434, 692, 759, 776, 1225
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 3 cut(s) 476, 488, 1167
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 4 cut(s) 125, 228, 304, 1334
ApoI RAATTY 4 cut(s) 17, 372, 1145, 1306
Asp700I GAANNNNTTC 1 cut(s) 170
AspA2I CCTAGG 1 cut(s) 1057
AspLEI GCGC 2 cut(s) 156, 392
AspS9I GGNCC 1 cut(s) 1327
AsuHPI GGTGA 6 cut(s) 224, 322, 338, 571, 1034, 1141
AvaII GGWCC 1 cut(s) 1327
AvrII CCTAGG 1 cut(s) 1057
BaeGI GKGCMC 2 cut(s) 507, 851
BanI GGYRCC 4 cut(s) 50, 502, 637, 1289
BanII GRGCYC 2 cut(s) 113, 368
BauI CACGAG 1 cut(s) 455
BbsI GAAGAC 3 cut(s) 78, 326, 805
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 3 cut(s) 112, 240, 316
BccI CCATC 5 cut(s) 323, 786, 863, 902, 991
BceAI ACGGC 2 cut(s) 311, 631
BciT130I CCWGG 1 cut(s) 158
BcoDI GTCTC 3 cut(s) 476, 488, 1167
BfaI CTAG 4 cut(s) 435, 551, 1058, 1269
BfmI CTRYAG 2 cut(s) 126, 967
BglII AGATCT 1 cut(s) 11
BisI GCNGC 6 cut(s) 126, 229, 305, 355, 512, 1335
BlnI CCTAGG 1 cut(s) 1057
BlsI GCNGC 6 cut(s) 127, 230, 306, 356, 513, 1336
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 1327
BmgBI CACGTC 1 cut(s) 1261
BmgT120I GGNCC 1 cut(s) 1327
BmiI GGNNCC 5 cut(s) 52, 367, 504, 639, 1291
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 1095
BmsI GCATC 3 cut(s) 460, 937, 1272
BmuI ACTGGG 1 cut(s) 1095
BoxI GACNNNNGTC 2 cut(s) 805, 969
BpiI GAAGAC 3 cut(s) 78, 326, 805
BpuEI CTTGAG 1 cut(s) 1296
BsaJI CCNNGG 5 cut(s) 293, 379, 787, 1018, 1057
BsaWI WCCGGW 2 cut(s) 178, 323
Bsc4I CCNNNNNNNGG 7 cut(s) 346, 422, 437, 650, 788, 908, 1044
Bse1I ACTGG 1 cut(s) 1101
Bse3DI GCAATG 1 cut(s) 625
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 5 cut(s) 293, 379, 787, 1018, 1057
BseGI GGATG 5 cut(s) 70, 797, 982, 1015, 1117
BseLI CCNNNNNNNGG 7 cut(s) 346, 422, 437, 650, 788, 908, 1044
BseMI GCAATG 1 cut(s) 625
BseMII CTCAG 2 cut(s) 512, 621
BseNI ACTGG 1 cut(s) 1101
BseRI GAGGAG 1 cut(s) 506
BseSI GKGCMC 2 cut(s) 507, 851
BseXI GCAGC 3 cut(s) 112, 240, 316
BseYI CCCAGC 1 cut(s) 688
BshFI GGCC 1 cut(s) 426
BshNI GGYRCC 4 cut(s) 50, 502, 637, 1289
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 2 cut(s) 179, 324
BslI CCNNNNNNNGG 7 cut(s) 346, 422, 437, 650, 788, 908, 1044
BsmAI GTCTC 3 cut(s) 476, 488, 1167
BsmI GAATGC 1 cut(s) 1154
BsnI GGCC 1 cut(s) 426
Bsp1286I GDGCHC 5 cut(s) 113, 149, 368, 507, 851
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 5 cut(s) 11, 184, 814, 1012, 1024
BspACI CCGC 4 cut(s) 340, 354, 512, 1152
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 511, 622
BspEI TCCGGA 1 cut(s) 178
BspLI GGNNCC 5 cut(s) 52, 367, 504, 639, 1291
BspMAI CTGCAG 1 cut(s) 130
BspT107I GGYRCC 4 cut(s) 50, 502, 637, 1289
BsrBI CCGCTC 1 cut(s) 514
BsrDI GCAATG 1 cut(s) 625
BsrI ACTGG 1 cut(s) 1101
BssECI CCNNGG 5 cut(s) 293, 379, 787, 1018, 1057
BssMI GATC 5 cut(s) 11, 184, 814, 1012, 1024
BssSI CACGAG 1 cut(s) 455
BssT1I CCWWGG 4 cut(s) 379, 787, 1018, 1057
Bst2BI CACGAG 1 cut(s) 455
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 971
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 428, 432, 724
BstDEI CTNAG 3 cut(s) 315, 498, 630
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 5 cut(s) 70, 797, 982, 1015, 1117
BstHHI GCGC 2 cut(s) 156, 392
BstKTI GATC 5 cut(s) 14, 187, 817, 1015, 1027
BstMAI GTCTC 3 cut(s) 476, 488, 1167
BstMBI GATC 5 cut(s) 11, 184, 814, 1012, 1024
BstMWI GCNNNNNNNGC 6 cut(s) 153, 304, 363, 398, 511, 1271
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 855
BstPAI GACNNNNGTC 2 cut(s) 805, 969
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 2 cut(s) 126, 967
BstSLI GKGCMC 2 cut(s) 507, 851
BstV1I GCAGC 3 cut(s) 112, 240, 316
BstV2I GAAGAC 3 cut(s) 78, 326, 805
BstX2I RGATCY 1 cut(s) 11
BstXI CCANNNNNNTGG 2 cut(s) 61, 1108
BstYI RGATCY 1 cut(s) 11
BsuRI GGCC 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 293
BtgZI GCGATG 1 cut(s) 173
BtrI CACGTC 1 cut(s) 1261
BtsCI GGATG 5 cut(s) 70, 797, 982, 1015, 1117
BtsIMutI CAGTG 2 cut(s) 930, 1108
Cac8I GCNNGC 3 cut(s) 428, 432, 724
CfoI GCGC 2 cut(s) 156, 392
Cfr13I GGNCC 1 cut(s) 1327
Csp6I GTAC 3 cut(s) 217, 1052, 1215
CspCI CAANNNNNGTGG 2 cut(s) 282, 317
CviAII CATG 2 cut(s) 508, 852
CviQI GTAC 3 cut(s) 217, 1052, 1215
DdeI CTNAG 3 cut(s) 315, 498, 630
DpnI GATC 5 cut(s) 13, 186, 816, 1014, 1026
DpnII GATC 5 cut(s) 11, 184, 814, 1012, 1024
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 4 cut(s) 379, 787, 1018, 1057
Eco24I GRGCYC 2 cut(s) 113, 368
Eco47I GGWCC 1 cut(s) 1327
EcoO109I RGGNCCY 1 cut(s) 1327
EcoRI GAATTC 1 cut(s) 1145
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 4 cut(s) 379, 787, 1018, 1057
EcoT22I ATGCAT 1 cut(s) 453
EcoT38I GRGCYC 2 cut(s) 113, 368
ErhI CCWWGG 4 cut(s) 379, 787, 1018, 1057
FaeI CATG 2 cut(s) 511, 855
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 2 cut(s) 507, 851
FauI CCCGC 1 cut(s) 347
FauNDI CATATG 1 cut(s) 940
Fnu4HI GCNGC 6 cut(s) 126, 229, 305, 355, 512, 1335
FokI GGATG 5 cut(s) 77, 804, 969, 1022, 1124
FriOI GRGCYC 2 cut(s) 113, 368
Fsp4HI GCNGC 6 cut(s) 126, 229, 305, 355, 512, 1335
FspBI CTAG 4 cut(s) 435, 551, 1058, 1269
GlaI GCGC 2 cut(s) 155, 391
GluI GCNGC 6 cut(s) 126, 229, 305, 355, 512, 1335
GsaI CCCAGC 1 cut(s) 692
HaeIII GGCC 1 cut(s) 426
HapII CCGG 2 cut(s) 179, 324
HhaI GCGC 2 cut(s) 156, 392
Hin1II CATG 2 cut(s) 511, 855
Hin6I GCGC 2 cut(s) 154, 390
HinP1I GCGC 2 cut(s) 154, 390
HindIII AAGCTT 1 cut(s) 757
HinfI GANTC 3 cut(s) 418, 496, 1203
HpaII CCGG 2 cut(s) 179, 324
HphI GGTGA 6 cut(s) 224, 322, 338, 571, 1034, 1141
Hpy166II GTNNAC 3 cut(s) 875, 1054, 1318
Hpy188I TCNGA 8 cut(s) 417, 464, 631, 907, 933, 1090, 1172, 1202
Hpy188III TCNNGA 4 cut(s) 22, 179, 455, 517
Hpy8I GTNNAC 3 cut(s) 875, 1054, 1318
HpyAV CCTTC 3 cut(s) 181, 1088, 1303
HpyCH4III ACNGT 1 cut(s) 971
HpyCH4IV ACGT 1 cut(s) 1260
HpyF10VI GCNNNNNNNGC 6 cut(s) 153, 304, 363, 398, 511, 1271
HpyF3I CTNAG 3 cut(s) 315, 498, 630
HpySE526I ACGT 1 cut(s) 1260
Hsp92II CATG 2 cut(s) 511, 855
HspAI GCGC 2 cut(s) 154, 390
Kpn2I TCCGGA 1 cut(s) 178
Kzo9I GATC 5 cut(s) 11, 184, 814, 1012, 1024
LmnI GCTCC 2 cut(s) 371, 519
Lsp1109I GCAGC 3 cut(s) 112, 240, 316
LweI GCATC 3 cut(s) 460, 937, 1272
MaeI CTAG 4 cut(s) 435, 551, 1058, 1269
MaeII ACGT 1 cut(s) 1260
MaeIII GTNAC 1 cut(s) 310
MalI GATC 5 cut(s) 13, 186, 816, 1014, 1026
MbiI CCGCTC 1 cut(s) 514
MboI GATC 5 cut(s) 11, 184, 814, 1012, 1024
MfeI CAATTG 2 cut(s) 269, 299
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 5 cut(s) 113, 149, 368, 507, 851
MlyI GAGTC 2 cut(s) 427, 490
MmeI TCCRAC 1 cut(s) 1281
Mph1103I ATGCAT 1 cut(s) 453
MroI TCCGGA 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 2 cut(s) 843, 1193
MslI CAYNNNNRTG 1 cut(s) 923
MspA1I CMGCKG 2 cut(s) 307, 776
MspI CCGG 2 cut(s) 179, 324
MspR9I CCNGG 1 cut(s) 158
MunI CAATTG 2 cut(s) 269, 299
Mva1269I GAATGC 1 cut(s) 1154
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 6 cut(s) 153, 304, 363, 398, 511, 1271
NdeI CATATG 1 cut(s) 940
NdeII GATC 5 cut(s) 11, 184, 814, 1012, 1024
NlaIII CATG 2 cut(s) 511, 855
NlaIV GGNNCC 5 cut(s) 52, 367, 504, 639, 1291
NmuCI GTSAC 1 cut(s) 310
NsiI ATGCAT 1 cut(s) 453
NspI RCATGY 1 cut(s) 855
PciI ACATGT 1 cut(s) 851
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 1 cut(s) 1154
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 1203
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 6 cut(s) 127, 230, 306, 356, 513, 1336
PleI GAGTC 2 cut(s) 426, 490
PpsI GAGTC 2 cut(s) 426, 490
PpuMI RGGWCCY 1 cut(s) 1327
PscI ACATGT 1 cut(s) 851
PshAI GACNNNNGTC 2 cut(s) 805, 969
Psp5II RGGWCCY 1 cut(s) 1327
Psp6I CCWGG 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 688
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 5 cut(s) 52, 367, 504, 639, 1291
PspPI GGNCC 1 cut(s) 1327
PspPPI RGGWCCY 1 cut(s) 1327
PstI CTGCAG 1 cut(s) 130
PsuI RGATCY 1 cut(s) 11
PvuII CAGCTG 2 cut(s) 307, 776
RsaI GTAC 3 cut(s) 218, 1053, 1216
RsaNI GTAC 3 cut(s) 217, 1052, 1215
RseI CAYNNNNRTG 1 cut(s) 923
SaqAI TTAA 2 cut(s) 843, 1193
SatI GCNGC 6 cut(s) 126, 229, 305, 355, 512, 1335
Sau3AI GATC 5 cut(s) 11, 184, 814, 1012, 1024
Sau96I GGNCC 1 cut(s) 1327
SchI GAGTC 2 cut(s) 427, 490
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 5 cut(s) 113, 149, 368, 507, 851
SfaNI GCATC 3 cut(s) 460, 937, 1272
SfcI CTRYAG 2 cut(s) 126, 967
SinI GGWCC 1 cut(s) 1327
SmiMI CAYNNNNRTG 1 cut(s) 923
SmlI CTYRAG 1 cut(s) 1311
SmoI CTYRAG 1 cut(s) 1311
SsiI CCGC 4 cut(s) 340, 354, 512, 1152
SspMI CTAG 4 cut(s) 435, 551, 1058, 1269
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 4 cut(s) 379, 787, 1018, 1057
TaaI ACNGT 1 cut(s) 971
TaiI ACGT 1 cut(s) 1263
TaqI TCGA 2 cut(s) 421, 702
TauI GCSGC 2 cut(s) 357, 514
TfiI GAWTC 1 cut(s) 1203
Tru1I TTAA 2 cut(s) 843, 1193
Tru9I TTAA 2 cut(s) 843, 1193
TscAI CASTG 2 cut(s) 930, 1108
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 4 cut(s) 125, 228, 304, 1334
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 81, 163, 927
TspGWI ACGGA 2 cut(s) 503, 666
TspRI CASTG 2 cut(s) 930, 1108
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 1327
XapI RAATTY 4 cut(s) 17, 372, 1145, 1306
XceI RCATGY 1 cut(s) 855
XcmI CCANNNNNNNNNTGG 3 cut(s) 434, 905, 1045
XmaJI CCTAGG 1 cut(s) 1057
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 4 cut(s) 435, 551, 1058, 1269
Zsp2I ATGCAT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.