Rroxscaffold_1G00023040

Transmembrane amino acid transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006420
Physical Location & Seq
Forward (+)
28497002 .. 28497866
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023040.1

Sequence Viewer

Length: 762 bp
ATGCTGCTCACGGATTTGAGCATATTGTCGTATGTGTCGGTCATGGGAGTTCTTTCTTCTCTCCTTATCGTGGGATCGCTTATATCCGTCGGAATATCAAAAGTTGGCTTTCATGCACAAGGGGGTCAGCTGTGGAACATGAGTGGAATCCCAACCGCTATGAGTTTCTACATTTTCTGCTTCGCAGGCCACCCAGTTCTACCTTCCATTTATGTGTCTATGAGACATCCACAACAGTTCATTAAGGTGTTAATGATTAGCTTTCTTCTCACCACCACGACTTGCTTGGTTACAGCTGTGATTGGCTATCTTATGTATGGAGGAGGAGCGCAATCTCAGATAACCCTCAACCTCCCCACCTCAGAAGCAGGTGCGAAAGTCGCTATTTATACATTACTATTAATACCGATTACCCGCTTTGCATTGTTGGTTACCCCTGTAGCTTCGTCTATTGAGGGTCACCTCCCTCAGAAGTACCAAAATAGGAGTTTAATTCAGAGAGCTGTTAGGCTAGTAATTTTGGCTAGCAGTACCTTATTAGCTTATTTCTTTCCCTATTTTGAGACCATAGTGGGCATACTAGGATCCATTTTTATTGTATTAGCATCTTTTTTACTGCCTTGTGCATGCTACATCAAGCTTACTCATAGCTTTAGTACATGGAGCTGCAAGTTAGTAGCCACTTTAGCTATATTGGTGTTTGGTGTTCTTGCCGGAGTTCTAGGCACATATGCAGCCATTGTTGATCTTGTAAACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

253

Amino Acids

27.26

Weight (kDa)

9.15

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 3 - 247 4.3e-36 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 359
AciI CCGC 2 cut(s) 156, 415
AclWI GGATC 3 cut(s) 82, 579, 592
AfaI GTAC 3 cut(s) 476, 532, 658
AfiI CCNNNNNNNGG 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 217, 557
AlwI GGATC 3 cut(s) 82, 579, 592
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 3 cut(s) 4, 666, 734
AseI ATTAAT 1 cut(s) 401
AspLEI GCGC 1 cut(s) 331
AsuHPI GGTGA 2 cut(s) 262, 452
AsuNHI GCTAGC 1 cut(s) 524
BamHI GGATCC 1 cut(s) 584
BbvI GCAGC 2 cut(s) 653, 746
BcoDI GTCTC 2 cut(s) 217, 557
BfaI CTAG 4 cut(s) 512, 525, 581, 722
BfmI CTRYAG 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 359
BisI GCNGC 3 cut(s) 5, 667, 735
BlsI GCNGC 3 cut(s) 6, 668, 736
BmiI GGNNCC 1 cut(s) 586
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 614
BmtI GCTAGC 1 cut(s) 528
BmuI ACTGGG 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 557
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 3 cut(s) 350, 375, 482
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 2 cut(s) 336, 339
BseXI GCAGC 2 cut(s) 653, 746
BshFI GGCC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 714
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 2 cut(s) 217, 557
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 557
Bsp143I GATC 3 cut(s) 74, 584, 745
BspACI CCGC 2 cut(s) 156, 415
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 3 cut(s) 349, 374, 481
BspLI GGNNCC 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 359
BspOI GCTAGC 1 cut(s) 528
BspPI GGATC 3 cut(s) 82, 579, 592
BspTNI GGTCTC 1 cut(s) 557
BsrI ACTGG 1 cut(s) 194
BssMI GATC 3 cut(s) 74, 584, 745
Bst4CI ACNGT 1 cut(s) 237
BstC8I GCNNGC 3 cut(s) 187, 526, 628
BstDEI CTNAG 3 cut(s) 336, 361, 468
BstEII GGTNACC 2 cut(s) 430, 458
BstF5I GGATG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 3 cut(s) 77, 587, 748
BstMAI GTCTC 2 cut(s) 217, 557
BstMBI GATC 3 cut(s) 74, 584, 745
BstMWI GCNNNNNNNGC 3 cut(s) 186, 380, 686
BstNSI RCATGY 1 cut(s) 630
BstPI GGTNACC 2 cut(s) 430, 458
BstSFI CTRYAG 1 cut(s) 438
BstV1I GCAGC 2 cut(s) 653, 746
BstX2I RGATCY 1 cut(s) 584
BstYI RGATCY 1 cut(s) 584
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 226
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 3 cut(s) 187, 526, 628
CfoI GCGC 1 cut(s) 331
Csp6I GTAC 3 cut(s) 475, 531, 657
CviAII CATG 5 cut(s) 43, 113, 139, 627, 660
CviQI GTAC 3 cut(s) 475, 531, 657
DdeI CTNAG 3 cut(s) 336, 361, 468
DpnI GATC 3 cut(s) 76, 586, 747
DpnII GATC 3 cut(s) 74, 584, 745
Eco31I GGTCTC 1 cut(s) 557
Eco91I GGTNACC 2 cut(s) 430, 458
EcoO65I GGTNACC 2 cut(s) 430, 458
FaeI CATG 5 cut(s) 46, 116, 142, 630, 663
FatI CATG 5 cut(s) 42, 112, 138, 626, 659
FauI CCCGC 1 cut(s) 422
FauNDI CATATG 1 cut(s) 730
Fnu4HI GCNGC 3 cut(s) 5, 667, 735
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 3 cut(s) 5, 667, 735
FspBI CTAG 4 cut(s) 512, 525, 581, 722
GlaI GCGC 1 cut(s) 330
GluI GCNGC 3 cut(s) 5, 667, 735
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 714
HhaI GCGC 1 cut(s) 331
Hin1II CATG 5 cut(s) 46, 116, 142, 630, 663
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 1 cut(s) 147
HpaII CCGG 1 cut(s) 714
HphI GGTGA 2 cut(s) 262, 452
Hpy166II GTNNAC 1 cut(s) 754
Hpy188I TCNGA 5 cut(s) 92, 339, 364, 471, 498
Hpy8I GTNNAC 1 cut(s) 754
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4V TGCA 5 cut(s) 116, 422, 626, 669, 734
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 380, 686
HpyF3I CTNAG 3 cut(s) 336, 361, 468
Hsp92II CATG 5 cut(s) 46, 116, 142, 630, 663
HspAI GCGC 1 cut(s) 329
Kzo9I GATC 3 cut(s) 74, 584, 745
LmnI GCTCC 2 cut(s) 326, 663
LpnPI CCDG 5 cut(s) 171, 207, 354, 450, 727
Lsp1109I GCAGC 2 cut(s) 653, 746
LweI GCATC 1 cut(s) 614
MaeI CTAG 4 cut(s) 512, 525, 581, 722
MaeIII GTNAC 3 cut(s) 289, 430, 458
MalI GATC 3 cut(s) 76, 586, 747
MboI GATC 3 cut(s) 74, 584, 745
MboII GAAGA 2 cut(s) 48, 257
MflI RGATCY 1 cut(s) 584
MluCI AATT 2 cut(s) 492, 516
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 8 cut(s) 314, 317, 356, 362, 370, 448, 473, 477
MseI TTAA 5 cut(s) 243, 251, 401, 491, 760
MslI CAYNNNNRTG 2 cut(s) 212, 245
MspA1I CMGCKG 2 cut(s) 130, 296
MspI CCGG 1 cut(s) 714
MwoI GCNNNNNNNGC 3 cut(s) 186, 380, 686
NdeI CATATG 1 cut(s) 730
NdeII GATC 3 cut(s) 74, 584, 745
NheI GCTAGC 1 cut(s) 524
NlaIII CATG 5 cut(s) 46, 116, 142, 630, 663
NlaIV GGNNCC 1 cut(s) 586
NmuCI GTSAC 1 cut(s) 458
NspI RCATGY 1 cut(s) 630
PaeI GCATGC 1 cut(s) 630
PaqCI CACCTGC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 3 cut(s) 6, 668, 736
PshBI ATTAAT 1 cut(s) 401
PspEI GGTNACC 2 cut(s) 430, 458
PspN4I GGNNCC 1 cut(s) 586
PsuI RGATCY 1 cut(s) 584
PvuII CAGCTG 2 cut(s) 130, 296
RsaI GTAC 3 cut(s) 476, 532, 658
RsaNI GTAC 3 cut(s) 475, 531, 657
RseI CAYNNNNRTG 2 cut(s) 212, 245
SaqAI TTAA 5 cut(s) 243, 251, 401, 491, 760
SatI GCNGC 3 cut(s) 5, 667, 735
Sau3AI GATC 3 cut(s) 74, 584, 745
SfaNI GCATC 1 cut(s) 614
SfcI CTRYAG 1 cut(s) 438
SmiMI CAYNNNNRTG 2 cut(s) 212, 245
SphI GCATGC 1 cut(s) 630
Sse9I AATT 2 cut(s) 492, 516
SsiI CCGC 2 cut(s) 156, 415
SspMI CTAG 4 cut(s) 512, 525, 581, 722
TaaI ACNGT 1 cut(s) 237
TaqII GACCGA 1 cut(s) 28
TasI AATT 2 cut(s) 492, 516
TatI WGTACW 1 cut(s) 656
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 5 cut(s) 243, 251, 401, 491, 760
Tru9I TTAA 5 cut(s) 243, 251, 401, 491, 760
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 3 cut(s) 4, 666, 734
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 2 cut(s) 101, 229
TspGWI ACGGA 2 cut(s) 26, 76
VspI ATTAAT 1 cut(s) 401
XceI RCATGY 1 cut(s) 630
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XspI CTAG 4 cut(s) 512, 525, 581, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.