Rw5G035400

Transmembrane amino acid transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006420
Physical Location & Seq
Forward (+)
61191455 .. 61192274
820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035400.1

Sequence Viewer

Length: 723 bp
ATGGGAGTTCTTTCTTCTCTCCTTATCGTGGGATCACTCATCTCCGTTGGAGTATCAGGAGTTGGCTTTCAAGCACAAGGAGGTCAGCTGTGGAACATGAGTGGAATCCCGACAGCTATGAGCTTCTACATTTTCTGTTTCGCGGGTCACCCGGTTCTACCTTCCATTTATATGTCTATGAGACACAGACATCAGTTCATTAAGGTGTTGATGATGAGCTTTCTTCTCACCACCACGATTTGCTTGGTTACGGCCGTGATTGGCTATCTTATGTATGGAGGAGGAGTGCAATCTCAGATAACCCTCAACCTCCCTACCTCAGAAGCCGGTGCGAAAGTCGCTGTTTATTCATTATTATTAATACCGATTACCCGCTATGCATTGATGGTTACCCCTGTAGCTTTGGCTATAGAGGGTCTCCTCCCTCAAAACTACCAAAATAGGAGTTTAATTCAGAGAGTTATTAGACTAGTAATTTTGGCTAGCAATACCTTGTTAGCTTATTTCTTTCCTTATTTTGAGACCTTAATGGGCCTACTAGGATCCATTTTTGTTGTATCAGCATCTTTTTTACTGCCCTGCGCATGCTACATCAAGCTTACTCATAGCTTTAGTACTTGGAGCTGCAAGTTAGTAGCCACTATAGCTATAATGGTGTTTGGTGTTCTTGCTGGAGTTCTAGGAACATATACAACCATTGTTGATCTTATAAACATTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

240

Amino Acids

26.02

Weight (kDa)

9.3

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 16 - 233 1.2e-33 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 710
Acc16I TGCGCA 1 cut(s) 583
AccII CGCG 1 cut(s) 143
AciI CCGC 2 cut(s) 143, 373
AclWI GGATC 3 cut(s) 40, 537, 550
AcoI YGGCCR 1 cut(s) 252
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 71
AhlI ACTAGT 1 cut(s) 469
Alw26I GTCTC 3 cut(s) 175, 422, 515
AlwI GGATC 3 cut(s) 40, 537, 550
AoxI GGCC 2 cut(s) 252, 532
ApeKI GCWGC 1 cut(s) 624
AseI ATTAAT 1 cut(s) 359
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 1 cut(s) 532
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 140, 220
AsuNHI GCTAGC 1 cut(s) 482
BamHI GGATCC 1 cut(s) 542
BbvI GCAGC 1 cut(s) 611
BccI CCATC 1 cut(s) 379
BceAI ACGGC 2 cut(s) 239, 267
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 3 cut(s) 175, 422, 515
BcuI ACTAGT 1 cut(s) 469
BfaI CTAG 4 cut(s) 470, 483, 539, 680
BfmI CTRYAG 3 cut(s) 396, 408, 642
BisI GCNGC 1 cut(s) 625
BlsI GCNGC 1 cut(s) 626
BmcAI AGTACT 1 cut(s) 616
Bme1390I CCNGG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 1 cut(s) 544
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 572
BmtI GCTAGC 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 693
BpuMI CCSGG 1 cut(s) 152
BsaI GGTCTC 2 cut(s) 422, 515
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 308, 333
BseRI GAGGAG 3 cut(s) 294, 297, 410
BseX3I CGGCCG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 611
Bsh1236I CGCG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 2 cut(s) 254, 534
BsiEI CGRYCG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 152, 327
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 3 cut(s) 175, 422, 515
BsnI GGCC 2 cut(s) 254, 534
Bso31I GGTCTC 2 cut(s) 422, 515
Bsp143I GATC 3 cut(s) 32, 542, 703
BspACI CCGC 2 cut(s) 143, 373
BspANI GGCC 2 cut(s) 254, 534
BspCNI CTCAG 2 cut(s) 307, 332
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 544
BspOI GCTAGC 1 cut(s) 486
BspPI GGATC 3 cut(s) 40, 537, 550
BspTNI GGTCTC 2 cut(s) 422, 515
BsrFI RCCGGY 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 326
BssMI GATC 3 cut(s) 32, 542, 703
BstC8I GCNNGC 2 cut(s) 484, 586
BstDEI CTNAG 2 cut(s) 294, 319
BstEII GGTNACC 2 cut(s) 146, 388
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 3 cut(s) 35, 545, 706
BstMAI GTCTC 3 cut(s) 175, 422, 515
BstMBI GATC 3 cut(s) 32, 542, 703
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 2 cut(s) 338, 644
BstNSI RCATGY 1 cut(s) 588
BstPI GGTNACC 2 cut(s) 146, 388
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 3 cut(s) 396, 408, 642
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 611
BstX2I RGATCY 1 cut(s) 542
BstYI RGATCY 1 cut(s) 542
BstZI CGGCCG 1 cut(s) 252
BsuRI GGCC 2 cut(s) 254, 534
Cac8I GCNNGC 2 cut(s) 484, 586
CfoI GCGC 1 cut(s) 584
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 532
Csp6I GTAC 1 cut(s) 615
CviAII CATG 2 cut(s) 97, 585
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 2 cut(s) 294, 319
DpnI GATC 3 cut(s) 34, 544, 705
DpnII GATC 3 cut(s) 32, 542, 703
EaeI YGGCCR 1 cut(s) 252
EagI CGGCCG 1 cut(s) 252
EclXI CGGCCG 1 cut(s) 252
Eco31I GGTCTC 2 cut(s) 422, 515
Eco52I CGGCCG 1 cut(s) 252
Eco91I GGTNACC 2 cut(s) 146, 388
EcoO65I GGTNACC 2 cut(s) 146, 388
EcoT22I ATGCAT 1 cut(s) 382
FaeI CATG 2 cut(s) 100, 588
FatI CATG 2 cut(s) 96, 584
FauI CCCGC 2 cut(s) 136, 380
Fnu4HI GCNGC 1 cut(s) 625
Fsp4HI GCNGC 1 cut(s) 625
FspBI CTAG 4 cut(s) 470, 483, 539, 680
FspI TGCGCA 1 cut(s) 583
GlaI GCGC 1 cut(s) 583
GluI GCNGC 1 cut(s) 625
GsuI CTGGAG 1 cut(s) 693
HaeIII GGCC 2 cut(s) 254, 534
HapII CCGG 2 cut(s) 152, 327
HhaI GCGC 1 cut(s) 584
Hin1II CATG 2 cut(s) 100, 588
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 1 cut(s) 105
HpaII CCGG 2 cut(s) 152, 327
HphI GGTGA 2 cut(s) 140, 220
Hpy188I TCNGA 3 cut(s) 297, 322, 456
Hpy188III TCNNGA 2 cut(s) 57, 109
HpyAV CCTTC 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 289, 380, 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 644
HpyF3I CTNAG 2 cut(s) 294, 319
Hsp92II CATG 2 cut(s) 100, 588
HspAI GCGC 1 cut(s) 582
Kzo9I GATC 3 cut(s) 32, 542, 703
LmnI GCTCC 1 cut(s) 621
LpnPI CCDG 6 cut(s) 42, 165, 340, 408, 592, 657
Lsp1109I GCAGC 1 cut(s) 611
LweI GCATC 1 cut(s) 572
MaeI CTAG 4 cut(s) 470, 483, 539, 680
MaeIII GTNAC 3 cut(s) 146, 247, 388
MalI GATC 3 cut(s) 34, 544, 705
MboI GATC 3 cut(s) 32, 542, 703
MboII GAAGA 2 cut(s) 6, 215
MflI RGATCY 1 cut(s) 542
MluCI AATT 2 cut(s) 450, 474
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 9 cut(s) 74, 272, 275, 314, 320, 328, 406, 431, 435
Mph1103I ATGCAT 1 cut(s) 382
MseI TTAA 5 cut(s) 201, 359, 449, 527, 717
MslI CAYNNNNRTG 2 cut(s) 170, 203
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 2 cut(s) 152, 327
MspR9I CCNGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 338, 644
NciI CCSGG 1 cut(s) 152
NdeII GATC 3 cut(s) 32, 542, 703
NheI GCTAGC 1 cut(s) 482
NlaIII CATG 2 cut(s) 100, 588
NlaIV GGNNCC 1 cut(s) 544
NmuCI GTSAC 1 cut(s) 146
NsbI TGCGCA 1 cut(s) 583
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 1 cut(s) 588
PaeI GCATGC 1 cut(s) 588
PfeI GAWTC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 626
PshBI ATTAAT 1 cut(s) 359
PsiI TTATAA 1 cut(s) 710
PspEI GGTNACC 2 cut(s) 146, 388
PspN4I GGNNCC 1 cut(s) 544
PspPI GGNCC 1 cut(s) 532
PsuI RGATCY 1 cut(s) 542
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
RseI CAYNNNNRTG 2 cut(s) 170, 203
SaqAI TTAA 5 cut(s) 201, 359, 449, 527, 717
SatI GCNGC 1 cut(s) 625
Sau3AI GATC 3 cut(s) 32, 542, 703
Sau96I GGNCC 1 cut(s) 532
ScaI AGTACT 1 cut(s) 616
ScrFI CCNGG 1 cut(s) 152
SfaNI GCATC 1 cut(s) 572
SfcI CTRYAG 3 cut(s) 396, 408, 642
SmiMI CAYNNNNRTG 2 cut(s) 170, 203
SpeI ACTAGT 1 cut(s) 469
SphI GCATGC 1 cut(s) 588
Sse9I AATT 2 cut(s) 450, 474
SsiI CCGC 2 cut(s) 143, 373
SspMI CTAG 4 cut(s) 470, 483, 539, 680
StyD4I CCNGG 1 cut(s) 150
TasI AATT 2 cut(s) 450, 474
TatI WGTACW 1 cut(s) 614
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 5 cut(s) 201, 359, 449, 527, 717
Tru9I TTAA 5 cut(s) 201, 359, 449, 527, 717
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 624
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 187, 339
TspGWI ACGGA 1 cut(s) 34
VspI ATTAAT 1 cut(s) 359
XceI RCATGY 1 cut(s) 588
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XspI CTAG 4 cut(s) 470, 483, 539, 680
ZrmI AGTACT 1 cut(s) 616
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.