RchiOBHm_Chr5g0071761

Villin headpiece domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
77543084 .. 77546786
3703 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGGAAGATAGAACAGATACTATCTCTCATATGAATGCCATAGTTGAGTCAAGCAAGGGGAATCTTGTTGTGGCTCAAATTATGGAGAACAAGGAGCCATCTCAATTTTTTTCAATTTTACAGACATTAATTGTTTTTAAGGGAGGCAGGAGTCAACGATACAAGAAGCTTGTGGCAGAAAAGGGTATTGCAGATGAAACTTATGATGAAAGCAAGACAACTCTTTTTCGTGTTCAAGGGACGAGTCCTAACAACATGCAGGCCATCTAA

Protein Analysis

89

Amino Acids

10.01

Weight (kDa)

6.57

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 114, 236
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AoxI GGCC 1 cut(s) 261
AseI ATTAAT 1 cut(s) 128
BccI CCATC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 96
BshFI GGCC 1 cut(s) 263
BslFI GGGAC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 253
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 1 cut(s) 263
BspANI GGCC 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 259
BsuRI GGCC 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 261
CviAII CATG 1 cut(s) 256
CviJI RGCY 4 cut(s) 74, 97, 169, 263
CviKI_1 RGCY 4 cut(s) 74, 97, 169, 263
FaeI CATG 1 cut(s) 259
FaiI YATR 6 cut(s) 30, 32, 41, 83, 204, 257
FaqI GGGAC 1 cut(s) 253
FatI CATG 1 cut(s) 255
FauNDI CATATG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 263
Hin1II CATG 1 cut(s) 259
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 4 cut(s) 47, 61, 151, 244
Hpy166II GTNNAC 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 191, 259
Hsp92II CATG 1 cut(s) 259
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 2 cut(s) 133, 245
MboII GAAGA 1 cut(s) 17
MluCI AATT 4 cut(s) 78, 104, 114, 129
MlyI GAGTC 3 cut(s) 56, 160, 253
MnlI CCTC 1 cut(s) 137
MseI TTAA 2 cut(s) 128, 138
MslI CAYNNNNRTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 40
NdeI CATATG 1 cut(s) 30
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 1 cut(s) 96
NspI RCATGY 1 cut(s) 259
PctI GAATGC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 61
PleI GAGTC 3 cut(s) 55, 159, 252
PpsI GAGTC 3 cut(s) 55, 159, 252
PshBI ATTAAT 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 128, 138
SchI GAGTC 3 cut(s) 56, 160, 253
SetI ASST 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 4 cut(s) 78, 104, 114, 129
TasI AATT 4 cut(s) 78, 104, 114, 129
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 2 cut(s) 128, 138
Tru9I TTAA 2 cut(s) 128, 138
TspDTI ATGAA 3 cut(s) 47, 210, 222
VspI ATTAAT 1 cut(s) 128
XceI RCATGY 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.