Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005563

Physical Location & Seq

Genomic Coordinates Reverse (-)

29587102 .. 29587998

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0261600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGGCATAGCGTTGGTGTGGTGCAGTCGGCGGCGGCGGTGATAGCTTACAATCTCAGACAGTCGTCAAGTTGGTGGCACGACATCAATGCCTCGCCGCTCTGGCAAGACCGAATCTTCCACGGCCTCGCCATTCTCTACGTCCTCGTCGCTTTCGTTGCCCTAGTTCAATTGGTTGGGACACAGGTGCGAGTGCCGGAGTACGGCTGGACCACCCAGAAGGTCTTCCAATTTCTCAATTTTATTGTCAATGCAGTTCGATCAGCAGTGTTTATTTTCCGCCGGCAAGTACAGAAGCTGCATCCAGAGATTCTCCAACATGTGTTGCTTGATATGCCAAGTTTGGCTTTCTTCACAACTTACGCGCTTCTGGTTCTGTTCTGGGCTGAAATCTACTATAAGGCGCGTGCTGTTTCTACAGATGGACTAAGGCCGAGCTTCTTTACAATCAACGCTGCGGTTTATCTAGTTCAGATATCTATGTGGTTGATATTATGGTGGAACCCTATCCCAGTCGTGGTCTTGTTATCTAAACTGTTCTTCGCAGGGGTCTCCTTATTTGCAGCCCTTGGATTTCTTGTGTATGGTGGAAGACTGTTTCTGATGTTGCAGAGATTTCCTGTGGAATCGAAAGCAAGACGTAAGAAGCTGCATGAGGTTGGCTACGTGACAACCATATGTTTTACGTGTTTCCTTGTGAGATGCGTAATGATGGGCTTATGTGCATTCGACAAGGCGGCAGACCTTGATGTTTTGAATCACCTTCTAAACTTGATCTATTACCTGTTGGTGGAGATATCGCCTTCTTCTTTGGTTCTTTTCATTCTGAGGAAGTTGCCTCCAAAGATTGGGATCACACAATATCAACCTATTCGCGATCGCGCTCTGAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

298

Amino Acids

34.05

Weight (kDa)

9.77

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	22 - 292	5.8e-135	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0071761
rosa_multiflora	Rmu_sc0000694.1_g000024 Rmu_sc0002285.1_g000031 Rmu_sc0005500.1_g000002 Rmu_sc0013612.1_g000018
rosa_roxburghii	Rroxscaffold_4G00322960 Rroxscaffold_5G00335950 Rroxscaffold_5G00366950 Rroxscaffold_6G00388330 Rroxscaffold_6G00389350 Rroxscaffold_7G00165060 Rroxscaffold_7G00197390
rosa_rugosa	Rorug01G0183100 Rorug01G0183200 Rorug03G0077400 Rorug05G0261600 Rorug05G0261700
rosa_samantha	Rh2AG454500 Rh2BG458700 Rh2CG441600 Rh4CG103500 Rh4CG324600 Rh4DG275900 Rh4DG307600 Rh5CG264700 Rh6CG064500 Rh6CG148200 Rh6DG061500 Rh7CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	848
AccBSI	CCGCTC	1 cut(s)	100
AccII	CGCG	4 cut(s)	365, 406, 876, 882
AciI	CCGC	7 cut(s)	32, 35, 38, 98, 280, 458, 737
AclWI	GGATC	1 cut(s)	860
AfaI	GTAC	2 cut(s)	203, 291
AfiI	CCNNNNNNNGG	4 cut(s)	203, 517, 790, 848
AflIII	ACRYGT	2 cut(s)	319, 686
AgsI	TTSAA	2 cut(s)	170, 757
AluBI	AGCT	4 cut(s)	47, 298, 438, 649
AluI	AGCT	4 cut(s)	47, 298, 438, 649
Alw26I	GTCTC	1 cut(s)	556
AlwI	GGATC	1 cut(s)	860
AlwNI	CAGNNNCTG	1 cut(s)	298
AoxI	GGCC	2 cut(s)	124, 431
ApeKI	GCWGC	4 cut(s)	298, 455, 563, 649
AsiSI	GCGATCGC	1 cut(s)	880
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	3 cut(s)	367, 406, 884
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	52, 752
AvaII	GGWCC	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	217, 598
BbvI	GCAGC	4 cut(s)	285, 442, 575, 636
BccI	CCATC	2 cut(s)	416, 706
BceAI	ACGGC	2 cut(s)	139, 220
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BcoDI	GTCTC	1 cut(s)	556
BfaI	CTAG	2 cut(s)	164, 467
BfmI	CTRYAG	1 cut(s)	417
BglI	GCCNNNNNGGC	1 cut(s)	103
BisI	GCNGC	8 cut(s)	33, 36, 98, 299, 456, 564, 650, 738
BlsI	GCNGC	8 cut(s)	34, 37, 99, 300, 457, 565, 651, 739
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	503
BmrI	ACTGGG	1 cut(s)	506
BmsI	GCATC	2 cut(s)	310, 692
BmuI	ACTGGG	1 cut(s)	506
BoxI	GACNNNNGTC	1 cut(s)	64
BpiI	GAAGAC	2 cut(s)	217, 598
BsaAI	YACGTR	2 cut(s)	667, 687
BsaBI	GATNNNNATC	1 cut(s)	851
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	2 cut(s)	121, 568
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 517, 790, 848
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	512
Bse8I	GATNNNNATC	1 cut(s)	851
BseDI	CCNNGG	2 cut(s)	121, 568
BseGI	GGATG	1 cut(s)	301
BseJI	GATNNNNATC	1 cut(s)	851
BseLI	CCNNNNNNNGG	4 cut(s)	203, 517, 790, 848
BseMII	CTCAG	2 cut(s)	70, 818
BseNI	ACTGG	1 cut(s)	512
BseXI	GCAGC	4 cut(s)	285, 442, 575, 636
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	4 cut(s)	365, 406, 876, 882
Bsh1285I	CGRYCG	1 cut(s)	880
BshFI	GGCC	2 cut(s)	126, 433
BsiEI	CGRYCG	1 cut(s)	880
BsiSI	CCGG	2 cut(s)	197, 283
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	203, 517, 790, 848
BsmAI	GTCTC	1 cut(s)	556
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	725
BsnI	GGCC	2 cut(s)	126, 433
Bso31I	GGTCTC	1 cut(s)	556
Bsp143I	GATC	4 cut(s)	260, 774, 852, 877
Bsp68I	TCGCGA	1 cut(s)	876
BspACI	CCGC	7 cut(s)	32, 35, 38, 98, 280, 458, 737
BspANI	GGCC	2 cut(s)	126, 433
BspCNI	CTCAG	2 cut(s)	69, 819
BspFNI	CGCG	4 cut(s)	365, 406, 876, 882
BspLI	GGNNCC	1 cut(s)	503
BspPI	GGATC	1 cut(s)	860
BspTNI	GGTCTC	1 cut(s)	556
BsrBI	CCGCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	512
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	121, 568
BssMI	GATC	4 cut(s)	260, 774, 852, 877
BssT1I	CCWWGG	1 cut(s)	568
Bst4CI	ACNGT	3 cut(s)	63, 537, 597
BstBAI	YACGTR	2 cut(s)	667, 687
BstC8I	GCNNGC	2 cut(s)	284, 408
BstDEI	CTNAG	3 cut(s)	56, 428, 827
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	4 cut(s)	365, 406, 876, 882
BstHHI	GCGC	3 cut(s)	367, 406, 884
BstKTI	GATC	4 cut(s)	263, 777, 855, 880
BstMAI	GTCTC	1 cut(s)	556
BstMBI	GATC	4 cut(s)	260, 774, 852, 877
BstMCI	CGRYCG	1 cut(s)	880
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 103, 158, 334
BstNSI	RCATGY	1 cut(s)	323
BstPAI	GACNNNNGTC	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	4 cut(s)	365, 406, 876, 882
BstV1I	GCAGC	4 cut(s)	285, 442, 575, 636
BstV2I	GAAGAC	2 cut(s)	217, 598
BsuRI	GGCC	2 cut(s)	126, 433
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
BtuMI	TCGCGA	1 cut(s)	876
Cac8I	GCNNGC	2 cut(s)	284, 408
CaiI	CAGNNNCTG	1 cut(s)	298
CfoI	GCGC	3 cut(s)	367, 406, 884
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	202, 290
CviAII	CATG	2 cut(s)	320, 653
CviQI	GTAC	2 cut(s)	202, 290
DdeI	CTNAG	3 cut(s)	56, 428, 827
DpnI	GATC	4 cut(s)	262, 776, 854, 879
DpnII	GATC	4 cut(s)	260, 774, 852, 877
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	568
Eco31I	GGTCTC	1 cut(s)	556
Eco32I	GATATC	2 cut(s)	477, 798
Eco47I	GGWCC	1 cut(s)	210
EcoRV	GATATC	2 cut(s)	477, 798
EcoT14I	CCWWGG	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	568
FaeI	CATG	2 cut(s)	323, 656
FalI	AAGNNNNNCTT	2 cut(s)	331, 363
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	319, 652
FauNDI	CATATG	1 cut(s)	677
Fnu4HI	GCNGC	8 cut(s)	33, 36, 98, 299, 456, 564, 650, 738
FokI	GGATG	1 cut(s)	288
Fsp4HI	GCNGC	8 cut(s)	33, 36, 98, 299, 456, 564, 650, 738
FspBI	CTAG	2 cut(s)	164, 467
GlaI	GCGC	3 cut(s)	366, 405, 883
GluI	GCNGC	8 cut(s)	33, 36, 98, 299, 456, 564, 650, 738
HaeIII	GGCC	2 cut(s)	126, 433
HapII	CCGG	2 cut(s)	197, 283
HhaI	GCGC	3 cut(s)	367, 406, 884
Hin1II	CATG	2 cut(s)	323, 656
Hin6I	GCGC	3 cut(s)	365, 404, 882
HinP1I	GCGC	3 cut(s)	365, 404, 882
HinfI	GANTC	4 cut(s)	114, 310, 626, 757
HpaII	CCGG	2 cut(s)	197, 283
HphI	GGTGA	2 cut(s)	52, 752
Hpy188I	TCNGA	5 cut(s)	59, 474, 603, 828, 888
Hpy188III	TCNNGA	2 cut(s)	305, 875
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	4 cut(s)	214, 773, 813, 883
HpyCH4III	ACNGT	3 cut(s)	63, 537, 597
HpyCH4IV	ACGT	4 cut(s)	141, 640, 666, 686
HpyCH4V	TGCA	7 cut(s)	25, 254, 301, 563, 610, 652, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 103, 158, 334
HpyF3I	CTNAG	3 cut(s)	56, 428, 827
HpySE526I	ACGT	4 cut(s)	141, 640, 666, 686
Hsp92II	CATG	2 cut(s)	323, 656
HspAI	GCGC	3 cut(s)	365, 404, 882
KroI	GCCGGC	1 cut(s)	282
KroNI	GCCGGC	1 cut(s)	284
Kzo9I	GATC	4 cut(s)	260, 774, 852, 877
Lsp1109I	GCAGC	4 cut(s)	285, 442, 575, 636
LweI	GCATC	2 cut(s)	310, 692
MaeI	CTAG	2 cut(s)	164, 467
MaeII	ACGT	4 cut(s)	141, 640, 666, 686
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	4 cut(s)	262, 776, 854, 879
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	4 cut(s)	260, 774, 852, 877
MboII	GAAGA	6 cut(s)	109, 217, 343, 532, 603, 798
MfeI	CAATTG	1 cut(s)	170
MluCI	AATT	3 cut(s)	170, 230, 238
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	6 cut(s)	103, 137, 155, 649, 822, 849
MroNI	GCCGGC	1 cut(s)	282
MroXI	GAANNNNTTC	1 cut(s)	224
MspI	CCGG	2 cut(s)	197, 283
MunI	CAATTG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	725
MvnI	CGCG	4 cut(s)	365, 406, 876, 882
MwoI	GCNNNNNNNGC	4 cut(s)	44, 103, 158, 334
NaeI	GCCGGC	1 cut(s)	284
NdeI	CATATG	1 cut(s)	677
NdeII	GATC	4 cut(s)	260, 774, 852, 877
NgoMIV	GCCGGC	1 cut(s)	282
NlaIII	CATG	2 cut(s)	323, 656
NlaIV	GGNNCC	1 cut(s)	503
NmeAIII	GCCGAG	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	667
NruI	TCGCGA	1 cut(s)	876
NspI	RCATGY	1 cut(s)	323
PciI	ACATGT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	725
PdiI	GCCGGC	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	4 cut(s)	114, 310, 626, 757
PflMI	CCANNNNNTGG	1 cut(s)	848
PkrI	GCNGC	8 cut(s)	34, 37, 99, 300, 457, 565, 651, 739
Ple19I	CGATCG	1 cut(s)	880
Ppu21I	YACGTR	2 cut(s)	667, 687
PscI	ACATGT	1 cut(s)	319
PshAI	GACNNNNGTC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	298
PvuI	CGATCG	1 cut(s)	880
RgaI	GCGATCGC	1 cut(s)	880
RruI	TCGCGA	1 cut(s)	876
RsaI	GTAC	2 cut(s)	203, 291
RsaNI	GTAC	2 cut(s)	202, 290
SatI	GCNGC	8 cut(s)	33, 36, 98, 299, 456, 564, 650, 738
Sau3AI	GATC	4 cut(s)	260, 774, 852, 877
Sau96I	GGNCC	1 cut(s)	210
SfaAI	GCGATCGC	1 cut(s)	880
SfaNI	GCATC	2 cut(s)	310, 692
SfcI	CTRYAG	1 cut(s)	417
SgfI	GCGATCGC	1 cut(s)	880
SinI	GGWCC	1 cut(s)	210
Sse9I	AATT	3 cut(s)	170, 230, 238
SsiI	CCGC	7 cut(s)	32, 35, 38, 98, 280, 458, 737
SspMI	CTAG	2 cut(s)	164, 467
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	3 cut(s)	63, 537, 597
TaiI	ACGT	4 cut(s)	144, 643, 669, 689
TaqI	TCGA	3 cut(s)	259, 629, 729
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	3 cut(s)	170, 230, 238
TatI	WGTACW	1 cut(s)	289
TauI	GCSGC	4 cut(s)	35, 38, 100, 740
TfiI	GAWTC	4 cut(s)	114, 310, 626, 757
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	4 cut(s)	298, 455, 563, 649
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	1 cut(s)	811
TspRI	CASTG	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	210
XceI	RCATGY	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	2 cut(s)	164, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.