Villin headpiece domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0071761 |
| rosa_multiflora | Rmu_sc0000694.1_g000024 Rmu_sc0002285.1_g000031 Rmu_sc0005500.1_g000002 Rmu_sc0013612.1_g000018 |
| rosa_roxburghii | Rroxscaffold_4G00322960 Rroxscaffold_5G00335950 Rroxscaffold_5G00366950 Rroxscaffold_6G00388330 Rroxscaffold_6G00389350 Rroxscaffold_7G00165060 Rroxscaffold_7G00197390 |
| rosa_rugosa | Rorug01G0183100 Rorug01G0183200 Rorug03G0077400 Rorug05G0261600 Rorug05G0261700 |
| rosa_samantha | Rh2AG454500 Rh2BG458700 Rh2CG441600 Rh4CG103500 Rh4CG324600 Rh4DG275900 Rh4DG307600 Rh5CG264700 Rh6CG064500 Rh6CG148200 Rh6DG061500 Rh7CG217000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 227 |
| AgsI | TTSAA | 1 cut(s) | 323 |
| AluBI | AGCT | 1 cut(s) | 61 |
| AluI | AGCT | 1 cut(s) | 61 |
| AoxI | GGCC | 1 cut(s) | 348 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| BccI | CCATC | 1 cut(s) | 11 |
| BsaBI | GATNNNNATC | 1 cut(s) | 120 |
| BsaJI | CCNNGG | 1 cut(s) | 45 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 227 |
| Bse8I | GATNNNNATC | 1 cut(s) | 120 |
| BseDI | CCNNGG | 1 cut(s) | 45 |
| BseGI | GGATG | 1 cut(s) | 121 |
| BseJI | GATNNNNATC | 1 cut(s) | 120 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 227 |
| BshFI | GGCC | 1 cut(s) | 350 |
| BslFI | GGGAC | 2 cut(s) | 16, 340 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 227 |
| BsmFI | GGGAC | 2 cut(s) | 16, 340 |
| BsnI | GGCC | 1 cut(s) | 350 |
| BspANI | GGCC | 1 cut(s) | 350 |
| BssECI | CCNNGG | 1 cut(s) | 45 |
| Bst4CI | ACNGT | 1 cut(s) | 30 |
| BstC8I | GCNNGC | 1 cut(s) | 348 |
| BstF5I | GGATG | 1 cut(s) | 121 |
| BstNSI | RCATGY | 1 cut(s) | 346 |
| BsuRI | GGCC | 1 cut(s) | 350 |
| BtsCI | GGATG | 1 cut(s) | 121 |
| BtsIMutI | CAGTG | 1 cut(s) | 73 |
| Cac8I | GCNNGC | 1 cut(s) | 348 |
| CviAII | CATG | 2 cut(s) | 135, 343 |
| CviJI | RGCY | 5 cut(s) | 44, 61, 139, 194, 350 |
| CviKI_1 | RGCY | 5 cut(s) | 44, 61, 139, 194, 350 |
| EcoT22I | ATGCAT | 1 cut(s) | 136 |
| FaeI | CATG | 2 cut(s) | 138, 346 |
| FaiI | YATR | 9 cut(s) | 93, 97, 132, 136, 186, 188, 197, 291, 344 |
| FaqI | GGGAC | 2 cut(s) | 16, 340 |
| FatI | CATG | 2 cut(s) | 134, 342 |
| FauNDI | CATATG | 1 cut(s) | 186 |
| FokI | GGATG | 1 cut(s) | 128 |
| HaeIII | GGCC | 1 cut(s) | 350 |
| Hin1II | CATG | 2 cut(s) | 138, 346 |
| HincII | GTYRAC | 1 cut(s) | 242 |
| HindII | GTYRAC | 1 cut(s) | 242 |
| HindIII | AAGCTT | 1 cut(s) | 59 |
| HinfI | GANTC | 5 cut(s) | 121, 203, 217, 238, 331 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy166II | GTNNAC | 1 cut(s) | 242 |
| Hpy188I | TCNGA | 1 cut(s) | 49 |
| Hpy8I | GTNNAC | 1 cut(s) | 242 |
| HpyCH4III | ACNGT | 1 cut(s) | 30 |
| HpyCH4V | TGCA | 4 cut(s) | 88, 134, 278, 346 |
| Hsp92II | CATG | 2 cut(s) | 138, 346 |
| LpnPI | CCDG | 5 cut(s) | 54, 196, 220, 234, 332 |
| MboII | GAAGA | 1 cut(s) | 173 |
| MlyI | GAGTC | 3 cut(s) | 212, 247, 340 |
| MnlI | CCTC | 2 cut(s) | 55, 224 |
| Mph1103I | ATGCAT | 1 cut(s) | 136 |
| NdeI | CATATG | 1 cut(s) | 186 |
| NlaIII | CATG | 2 cut(s) | 138, 346 |
| NsiI | ATGCAT | 1 cut(s) | 136 |
| NspI | RCATGY | 1 cut(s) | 346 |
| PfeI | GAWTC | 2 cut(s) | 121, 217 |
| PleI | GAGTC | 3 cut(s) | 211, 246, 339 |
| PpsI | GAGTC | 3 cut(s) | 211, 246, 339 |
| SchI | GAGTC | 3 cut(s) | 212, 247, 340 |
| SetI | ASST | 1 cut(s) | 63 |
| TaaI | ACNGT | 1 cut(s) | 30 |
| TfiI | GAWTC | 2 cut(s) | 121, 217 |
| TscAI | CASTG | 1 cut(s) | 73 |
| TspDTI | ATGAA | 3 cut(s) | 203, 297, 309 |
| TspRI | CASTG | 1 cut(s) | 73 |
| XceI | RCATGY | 1 cut(s) | 346 |
| Zsp2I | ATGCAT | 1 cut(s) | 136 |