Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005563

Physical Location & Seq

Genomic Coordinates Forward (+)

58610640 .. 58612050

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG324600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGACGGCGACTAAGAGGGAGGACGCCGTACGACGTAGCACCGCCATCACCGATTACCGCAAGAGGGCTCTTCCAAGAGAGGTTTGGTGGGTAGATGGTGATAGACTGTCCCTTGTTCCAGCCTCGGAACAAAGAAAGCTTTTCAGTGGGGATTGCTACATTATGCAATATACATATCTTGGTAACGAAAGGGATGAGAATCTATTTTATGCATGGCTTGGTGGTGGGAGTGTAATGGAAGATAGAACAGATACTATCTCTCATATGAATGCCATAGTTGAGTCAAGCAGGGGGAATCCTGTTGTGGCTCAAATTATGGAGAACAAGGAGCCATCTCAATTTTTTTCAATTTTACAGACATTAATTGTTTTTAAGGGAGGCAGGAGTCAACGATACAAGAAGTTTGTCGCAAAAAAGGGTATTGCAGATGAAACTTGTGATGAAAGCAAGACAACTCTTTTTCGTGTTCAAGGGACGAGTCCTAACAACATGCAGGCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

167

Amino Acids

19.06

Weight (kDa)

8.88

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7904	PF25480	35 - 124	3.2e-06	Domain of unknown function (DUF7904)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0071761
rosa_multiflora	Rmu_sc0000694.1_g000024 Rmu_sc0002285.1_g000031 Rmu_sc0005500.1_g000002 Rmu_sc0013612.1_g000018
rosa_roxburghii	Rroxscaffold_4G00322960 Rroxscaffold_5G00335950 Rroxscaffold_5G00366950 Rroxscaffold_6G00388330 Rroxscaffold_6G00389350 Rroxscaffold_7G00165060 Rroxscaffold_7G00197390
rosa_rugosa	Rorug01G0183100 Rorug01G0183200 Rorug03G0077400 Rorug05G0261600 Rorug05G0261700
rosa_samantha	Rh2AG454500 Rh2BG458700 Rh2CG441600 Rh4CG103500 Rh4CG324600 Rh4DG275900 Rh4DG307600 Rh5CG264700 Rh6CG064500 Rh6CG148200 Rh6DG061500 Rh7CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	42, 58
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	348, 470
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
AoxI	GGCC	1 cut(s)	495
AseI	ATTAAT	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	40, 110
BanII	GRGCYC	1 cut(s)	70
BccI	CCATC	3 cut(s)	53, 89, 340
BceAI	ACGGC	2 cut(s)	11, 21
BmiI	GGNNCC	1 cut(s)	330
BsaBI	GATNNNNATC	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	199
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	497
BsiWI	CGTACG	1 cut(s)	28
BslFI	GGGAC	2 cut(s)	94, 487
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmFI	GGGAC	2 cut(s)	94, 487
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	70
BspACI	CCGC	2 cut(s)	42, 58
BspANI	GGCC	1 cut(s)	497
BspLI	GGNNCC	1 cut(s)	330
BspQI	GCTCTTC	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	123
BssNI	GRCGYC	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	497
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	495
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	2 cut(s)	213, 490
CviJI	RGCY	7 cut(s)	68, 122, 139, 217, 308, 331, 497
CviKI_1	RGCY	7 cut(s)	68, 122, 139, 217, 308, 331, 497
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	2 cut(s)	216, 493
FaqI	GGGAC	2 cut(s)	94, 487
FatI	CATG	2 cut(s)	212, 489
FauNDI	CATATG	1 cut(s)	264
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	497
HgaI	GACGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	216, 493
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	5 cut(s)	199, 281, 295, 385, 478
HphI	GGTGA	2 cut(s)	40, 110
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	389
Hpy99I	CGWCG	1 cut(s)	36
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	166, 212, 425, 493
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	34
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	216, 493
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	5 cut(s)	132, 274, 312, 367, 479
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	182
MboII	GAAGA	2 cut(s)	62, 251
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	4 cut(s)	312, 338, 348, 363
MlyI	GAGTC	3 cut(s)	290, 394, 487
MnlI	CCTC	6 cut(s)	9, 13, 57, 73, 133, 371
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	2 cut(s)	362, 372
MslI	CAYNNNNRTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	274
NdeI	CATATG	1 cut(s)	264
NlaIII	CATG	2 cut(s)	216, 493
NlaIV	GGNNCC	1 cut(s)	330
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	1 cut(s)	493
PciSI	GCTCTTC	1 cut(s)	75
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	199, 295
Pfl23II	CGTACG	1 cut(s)	28
PleI	GAGTC	3 cut(s)	289, 393, 486
PpsI	GAGTC	3 cut(s)	289, 393, 486
PshBI	ATTAAT	1 cut(s)	362
PspLI	CGTACG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	330
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	362, 372
SchI	GAGTC	3 cut(s)	290, 394, 487
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	3 cut(s)	37, 84, 141
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	4 cut(s)	312, 338, 348, 363
SsiI	CCGC	2 cut(s)	42, 58
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	37
TasI	AATT	4 cut(s)	312, 338, 348, 363
TfiI	GAWTC	2 cut(s)	199, 295
Tru1I	TTAA	2 cut(s)	362, 372
Tru9I	TTAA	2 cut(s)	362, 372
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	3 cut(s)	281, 444, 456
TspRI	CASTG	1 cut(s)	151
VspI	ATTAAT	1 cut(s)	362
XceI	RCATGY	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.