Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000694.1

Orthogroup ID

OG0005563

Physical Location & Seq

Genomic Coordinates Forward (+)

121261 .. 122527

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000694.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgcaatctataacatttcaggtttggtgggtagatggtgatagactgtcccttgttccagcctcagaacaaagaaagcttttcagtggggattgctacattctgcaatatacatatcttggcaacgaaagggatgagaatctattttatgcatggcttggtggtgggagtgtaatgggaggcaggagtcaacgatacaagaagcttgtggcagaaaagggtattgcagatgaaacttatgatgaaagcaagacagctctttttcgtgttcaagggacgagtcctaacaacatgcaggccatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

101

Amino Acids

11.5

Weight (kDa)

5.33

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0071761
rosa_multiflora	Rmu_sc0000694.1_g000024 Rmu_sc0002285.1_g000031 Rmu_sc0005500.1_g000002 Rmu_sc0013612.1_g000018
rosa_roxburghii	Rroxscaffold_4G00322960 Rroxscaffold_5G00335950 Rroxscaffold_5G00366950 Rroxscaffold_6G00388330 Rroxscaffold_6G00389350 Rroxscaffold_7G00165060 Rroxscaffold_7G00197390
rosa_rugosa	Rorug01G0183100 Rorug01G0183200 Rorug03G0077400 Rorug05G0261600 Rorug05G0261700
rosa_samantha	Rh2AG454500 Rh2BG458700 Rh2CG441600 Rh4CG103500 Rh4CG324600 Rh4DG275900 Rh4DG307600 Rh5CG264700 Rh6CG064500 Rh6CG148200 Rh6DG061500 Rh7CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	3 cut(s)	79, 205, 257
AluI	AGCT	3 cut(s)	79, 205, 257
AoxI	GGCC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	50
BccI	CCATC	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	138
Bse8I	GATNNNNATC	1 cut(s)	138
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	299
BslFI	GGGAC	2 cut(s)	34, 289
BsmFI	GGGAC	2 cut(s)	34, 289
BsnI	GGCC	1 cut(s)	299
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	297
CviAII	CATG	2 cut(s)	153, 292
CviJI	RGCY	6 cut(s)	62, 79, 157, 205, 257, 299
CviKI_1	RGCY	6 cut(s)	62, 79, 157, 205, 257, 299
DdeI	CTNAG	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	154
FaeI	CATG	2 cut(s)	156, 295
FaiI	YATR	7 cut(s)	11, 111, 115, 150, 154, 240, 293
FaqI	GGGAC	2 cut(s)	34, 289
FatI	CATG	2 cut(s)	152, 291
FokI	GGATG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	156, 295
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HindIII	AAGCTT	2 cut(s)	77, 203
HinfI	GANTC	3 cut(s)	139, 187, 280
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	4, 106, 152, 227, 295
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	156, 295
LmnI	GCTCC	2 cut(s)	50, 285
LpnPI	CCDG	4 cut(s)	5, 72, 169, 281
MlyI	GAGTC	2 cut(s)	196, 289
MnlI	CCTC	2 cut(s)	73, 173
Mph1103I	ATGCAT	1 cut(s)	154
NlaIII	CATG	2 cut(s)	156, 295
NsiI	ATGCAT	1 cut(s)	154
NspI	RCATGY	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	139
PleI	GAGTC	2 cut(s)	195, 288
PpsI	GAGTC	2 cut(s)	195, 288
SchI	GAGTC	2 cut(s)	196, 289
SetI	ASST	4 cut(s)	24, 81, 207, 259
TaaI	ACNGT	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	139
TscAI	CASTG	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	246, 258
TspRI	CASTG	1 cut(s)	91
XceI	RCATGY	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.