Rroxscaffold_4G00322960

Villin headpiece domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
53573830 .. 53575215
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322960.1

Sequence Viewer

Length: 357 bp
ATGACGGCGACCGAGAGGGAGGAGGTCGTTTGGTGGGTAGATGGTGATAGACTATCCCTTGTTCCAGCCTTAGAACAAAGAAAGCTTTTCGGTGGGGATTGCTACATTCTGCAATATACATATCTTGGTAACGAAAGGGATGAGAATCTATTTTATGCATGGCTTGGTGGTAGGAGTGTAATGGAAGATAGAACAGATACTATCTCTCATATGAATGCCATAGTTGAGTCAAGCAAGGGGAATCCTGTTGTGGGAGGCAGGAGTCAACAATACAAGAAGCTTGTGGCAAAAAAGGGTATTGCAGATGAAACTTATGATGAAAGCAAGACAACTCTCGTGTCAAGGGACGAGTCCTAA

Protein Analysis

118

Amino Acids

13.41

Weight (kDa)

4.89

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 251
AluBI AGCT 2 cut(s) 85, 280
AluI AGCT 2 cut(s) 85, 280
AsuHPI GGTGA 1 cut(s) 56
BauI CACGAG 1 cut(s) 335
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 144
BseGI GGATG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 12
BsiEI CGRYCG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 251
BsmI GAATGC 1 cut(s) 220
BssSI CACGAG 1 cut(s) 335
Bst2BI CACGAG 1 cut(s) 335
BstDEI CTNAG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 145
BstMCI CGRYCG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 145
CviAII CATG 1 cut(s) 159
CviJI RGCY 4 cut(s) 68, 85, 163, 280
CviKI_1 RGCY 4 cut(s) 68, 85, 163, 280
DdeI CTNAG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 1 cut(s) 162
FaiI YATR 8 cut(s) 117, 121, 156, 160, 210, 212, 221, 315
FatI CATG 1 cut(s) 158
FauNDI CATATG 1 cut(s) 210
FokI GGATG 1 cut(s) 152
Hin1II CATG 1 cut(s) 162
HincII GTYRAC 1 cut(s) 266
HindII GTYRAC 1 cut(s) 266
HindIII AAGCTT 2 cut(s) 83, 278
HinfI GANTC 5 cut(s) 145, 227, 241, 262, 350
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 266
HpyCH4V TGCA 3 cut(s) 112, 158, 302
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 1 cut(s) 162
LpnPI CCDG 3 cut(s) 78, 244, 258
MaeIII GTNAC 1 cut(s) 128
MboII GAAGA 1 cut(s) 197
MlyI GAGTC 2 cut(s) 236, 271
MnlI CCTC 4 cut(s) 9, 13, 16, 248
Mph1103I ATGCAT 1 cut(s) 160
MslI CAYNNNNRTG 1 cut(s) 213
Mva1269I GAATGC 1 cut(s) 220
NdeI CATATG 1 cut(s) 210
NlaIII CATG 1 cut(s) 162
NsiI ATGCAT 1 cut(s) 160
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 145, 241
PleI GAGTC 2 cut(s) 235, 270
PpsI GAGTC 2 cut(s) 235, 270
RseI CAYNNNNRTG 1 cut(s) 213
SchI GAGTC 2 cut(s) 236, 271
SetI ASST 3 cut(s) 27, 87, 282
SmiMI CAYNNNNRTG 1 cut(s) 213
TaqII GACCGA 1 cut(s) 26
TfiI GAWTC 2 cut(s) 145, 241
TspDTI ATGAA 3 cut(s) 227, 321, 333
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.