Rh4DG307600

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0005563
Physical Location & Seq
Forward (+)
52947927 .. 52958483
10557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG307600.1

Sequence Viewer

Length: 1011 bp
ATGAAGGTTTGGTGGGTAGATGGTGATAGACTGTCCCTTGTTCCAGCCTCAGAACAAAGAAAGCTTTTCAGTGGGGATTGCTACATTCTGCAATATACATATCTTGGCAACGAAAGGGATGAGAATCTATTTTATTCATGGCTTGGTGGTGGGAGTGTAATGGAAGATAGAACAGATACTATCTCTCATATGAATGCCATAGCTCAAATTATGGAGAACAAGGAGCCATCTCAATTTTTTTCAATTTTACAGACATTAATTGTTTTTAAGGGAGGCAGGAGTCAACGATACAAGAAGCTTGTGGCAGAAAAGGTTGATACAGTTTCAGGCTCTTTGAACTCTTCCTATTGTTACATCCTGCAAACTGCCAACATGGCAAGCCATATCAAGGAACTGAAGGTGGATTTCAAGGCAATTCGAAAAATTGATTTCTACTGCAAGAACTGTCAATATAAACAACATCAGTGCTATGCTTGTGGGAAGTTAGGATCCTCGGACAAATCTTTAGGTGCTGAGGTCTTCCCCTGCACTTCTGCAAGGTGTGGTCAGTTTTATCATCCTCATTGTATTGCAAAATTAAGATATCATGAGACCGGAGTTTCTGCAGAAGAACTTGAGAAAAGAATTATGCTGGGGGAATCTTTTACATGTCCAATTCACAAGTGCTGGTTTTGTAAGCAAGGAGAGAATAAGAAGGATCCTGAATTGCAGTTTGCTGTGTGTAGGCGTTGTCCTACATCCTACCACCGTAAATGCTTGCCACGGTATACTGGGACATTCGTTTTGCAAAAGGCAAGGAAGGTGATGAGGAAGACATGGATACAAGAGCTTGGGAAGGAAGGGCGTGAGAAAATGTCAAAGAGGATTCCCGATTCTGCTATAATATTCATGAATGATAAAAGAGGTGTCATGGAGGCTGGGCTGGACTCGTCGAAGGCCGTTGGGCACAGTGTTGGTGTAGGTGTTGCCGGTGGAGCTCCGGTGTATTACATTGAGTTGCCTTCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

336

Amino Acids

38.16

Weight (kDa)

9.07

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 152 - 220 2.7e-19 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 767
AclWI GGATC 4 cut(s) 483, 496, 692, 705
AcuI CTGAAG 1 cut(s) 416
AfiI CCNNNNNNNGG 1 cut(s) 388
AflIII ACRYGT 1 cut(s) 647
AgsI TTSAA 3 cut(s) 243, 337, 409
AluBI AGCT 5 cut(s) 64, 203, 298, 829, 977
AluI AGCT 5 cut(s) 64, 203, 298, 829, 977
Alw21I GWGCWC 1 cut(s) 979
Alw26I GTCTC 1 cut(s) 584
AlwI GGATC 4 cut(s) 483, 496, 692, 705
AoxI GGCC 1 cut(s) 936
ArsI GACNNNNNNTTYG 2 cut(s) 766, 798
AseI ATTAAT 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 35, 814
AsuII TTCGAA 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 948
BamHI GGATCC 2 cut(s) 488, 697
BanII GRGCYC 1 cut(s) 979
BbsI GAAGAC 2 cut(s) 511, 818
Bbv12I GWGCWC 1 cut(s) 979
BbvCI CCTCAGC 1 cut(s) 513
BccI CCATC 2 cut(s) 14, 235
BceAI ACGGC 1 cut(s) 923
BciVI GTATCC 1 cut(s) 813
BcoDI GTCTC 1 cut(s) 584
BfmI CTRYAG 1 cut(s) 603
BfuI GTATCC 1 cut(s) 813
BglI GCCNNNNNGGC 1 cut(s) 374
BmiI GGNNCC 3 cut(s) 225, 490, 699
BmrI ACTGGG 1 cut(s) 780
BmuI ACTGGG 1 cut(s) 780
BpiI GAAGAC 2 cut(s) 511, 818
Bpu10I CCTNAGC 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 635
BsaBI GATNNNNATC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 2 cut(s) 492, 761
BsaWI WCCGGW 2 cut(s) 593, 979
BsaXI ACNNNNNCTCC 2 cut(s) 966, 996
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 968
Bse1I ACTGG 1 cut(s) 775
Bse8I GATNNNNATC 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 492, 761
BseGI GGATG 4 cut(s) 124, 354, 556, 737
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMII CTCAG 2 cut(s) 63, 504
BseNI ACTGG 1 cut(s) 775
BseSI GKGCMC 1 cut(s) 948
BseYI CCCAGC 2 cut(s) 631, 917
BsgI GTGCAG 1 cut(s) 511
BshFI GGCC 1 cut(s) 938
BsiHKAI GWGCWC 1 cut(s) 979
BsiSI CCGG 3 cut(s) 594, 969, 980
BslFI GGGAC 2 cut(s) 19, 787
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 584
BsmFI GGGAC 2 cut(s) 19, 787
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 1 cut(s) 938
Bso31I GGTCTC 1 cut(s) 584
Bsp119I TTCGAA 1 cut(s) 418
Bsp1286I GDGCHC 2 cut(s) 948, 979
Bsp143I GATC 2 cut(s) 488, 697
BspANI GGCC 1 cut(s) 938
BspCNI CTCAG 2 cut(s) 62, 505
BspHI TCATGA 2 cut(s) 586, 888
BspLI GGNNCC 3 cut(s) 225, 490, 699
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 4 cut(s) 483, 496, 692, 705
BspT104I TTCGAA 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 584
BsrFI RCCGGY 1 cut(s) 968
BsrI ACTGG 1 cut(s) 775
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 2 cut(s) 492, 761
BssMI GATC 2 cut(s) 488, 697
BssNAI GTATAC 1 cut(s) 768
Bst1107I GTATAC 1 cut(s) 768
Bst4CI ACNGT 6 cut(s) 33, 322, 446, 749, 765, 950
Bst6I CTCTTC 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 379, 758
BstDEI CTNAG 2 cut(s) 49, 513
BstDSI CCRYGG 1 cut(s) 761
BstF5I GGATG 4 cut(s) 124, 354, 556, 737
BstKTI GATC 2 cut(s) 491, 700
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 2 cut(s) 488, 697
BstMWI GCNNNNNNNGC 2 cut(s) 374, 974
BstNSI RCATGY 1 cut(s) 651
BstSFI CTRYAG 1 cut(s) 603
BstSLI GKGCMC 1 cut(s) 948
BstV2I GAAGAC 2 cut(s) 511, 818
BstX2I RGATCY 2 cut(s) 488, 697
BstYI RGATCY 2 cut(s) 488, 697
BstZ17I GTATAC 1 cut(s) 768
BsuI GTATCC 1 cut(s) 813
BsuRI GGCC 1 cut(s) 938
BtgI CCRYGG 1 cut(s) 761
BtsCI GGATG 4 cut(s) 124, 354, 556, 737
BtsIMutI CAGTG 3 cut(s) 76, 470, 955
Cac8I GCNNGC 2 cut(s) 379, 758
CciI TCATGA 2 cut(s) 586, 888
Cfr10I RCCGGY 1 cut(s) 968
CviAII CATG 7 cut(s) 138, 373, 587, 648, 816, 889, 910
DdeI CTNAG 2 cut(s) 49, 513
DpnI GATC 2 cut(s) 490, 699
DpnII GATC 2 cut(s) 488, 697
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
Ecl136II GAGCTC 1 cut(s) 977
Eco24I GRGCYC 1 cut(s) 979
Eco31I GGTCTC 1 cut(s) 584
Eco32I GATATC 1 cut(s) 584
Eco53kI GAGCTC 1 cut(s) 977
Eco57I CTGAAG 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 977
EcoRV GATATC 1 cut(s) 584
EcoT38I GRGCYC 1 cut(s) 979
FaeI CATG 7 cut(s) 141, 376, 590, 651, 819, 892, 913
FaqI GGGAC 2 cut(s) 19, 787
FatI CATG 7 cut(s) 137, 372, 586, 647, 815, 888, 909
FauNDI CATATG 1 cut(s) 189
FblI GTMKAC 1 cut(s) 767
FokI GGATG 4 cut(s) 131, 341, 543, 724
FriOI GRGCYC 1 cut(s) 979
GsaI CCCAGC 2 cut(s) 635, 921
HaeIII GGCC 1 cut(s) 938
HapII CCGG 3 cut(s) 594, 969, 980
Hin1II CATG 7 cut(s) 141, 376, 590, 651, 819, 892, 913
HincII GTYRAC 1 cut(s) 284
HindII GTYRAC 1 cut(s) 284
HindIII AAGCTT 2 cut(s) 62, 296
HinfI GANTC 6 cut(s) 124, 280, 638, 865, 872, 926
HpaII CCGG 3 cut(s) 594, 969, 980
HphI GGTGA 2 cut(s) 35, 814
Hpy166II GTNNAC 2 cut(s) 284, 768
Hpy188I TCNGA 2 cut(s) 52, 496
Hpy188III TCNNGA 4 cut(s) 587, 701, 869, 889
Hpy8I GTNNAC 2 cut(s) 284, 768
Hpy99I CGWCG 1 cut(s) 934
HpyAV CCTTC 7 cut(s) 391, 688, 793, 829, 833, 928, 1011
HpyCH4III ACNGT 6 cut(s) 33, 322, 446, 749, 765, 950
HpyCH4V TGCA 9 cut(s) 91, 361, 438, 528, 536, 572, 605, 709, 787
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 974
HpyF3I CTNAG 2 cut(s) 49, 513
Hsp92II CATG 7 cut(s) 141, 376, 590, 651, 819, 892, 913
Kzo9I GATC 2 cut(s) 488, 697
LmnI GCTCC 3 cut(s) 223, 974, 982
MaeIII GTNAC 1 cut(s) 350
MalI GATC 2 cut(s) 490, 699
MboI GATC 2 cut(s) 488, 697
MboII GAAGA 5 cut(s) 176, 333, 511, 620, 823
MflI RGATCY 2 cut(s) 488, 697
MhlI GDGCHC 2 cut(s) 948, 979
MlyI GAGTC 2 cut(s) 289, 920
MnlI CCTC 9 cut(s) 58, 266, 502, 508, 570, 801, 855, 896, 907
MseI TTAA 3 cut(s) 257, 267, 578
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 3 cut(s) 594, 969, 980
Mva1269I GAATGC 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 374, 974
NdeI CATATG 1 cut(s) 189
NdeII GATC 2 cut(s) 488, 697
NlaIII CATG 7 cut(s) 141, 376, 590, 651, 819, 892, 913
NlaIV GGNNCC 3 cut(s) 225, 490, 699
NspI RCATGY 1 cut(s) 651
NspV TTCGAA 1 cut(s) 418
PagI TCATGA 2 cut(s) 586, 888
PciI ACATGT 1 cut(s) 647
PctI GAATGC 1 cut(s) 199
PfeI GAWTC 4 cut(s) 124, 638, 865, 872
PleI GAGTC 2 cut(s) 288, 920
PpsI GAGTC 2 cut(s) 288, 920
PscI ACATGT 1 cut(s) 647
PshBI ATTAAT 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 979
PspFI CCCAGC 2 cut(s) 631, 917
PspN4I GGNNCC 3 cut(s) 225, 490, 699
PstI CTGCAG 1 cut(s) 607
PsuI RGATCY 2 cut(s) 488, 697
RseI CAYNNNNRTG 1 cut(s) 192
SacI GAGCTC 1 cut(s) 979
SaqAI TTAA 3 cut(s) 257, 267, 578
Sau3AI GATC 2 cut(s) 488, 697
SchI GAGTC 2 cut(s) 289, 920
SduI GDGCHC 2 cut(s) 948, 979
SfcI CTRYAG 1 cut(s) 603
SfuI TTCGAA 1 cut(s) 418
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SspI AATATT 1 cut(s) 885
SstI GAGCTC 1 cut(s) 979
TaaI ACNGT 6 cut(s) 33, 322, 446, 749, 765, 950
TaqI TCGA 2 cut(s) 418, 932
TfiI GAWTC 4 cut(s) 124, 638, 865, 872
Tru1I TTAA 3 cut(s) 257, 267, 578
Tru9I TTAA 3 cut(s) 257, 267, 578
TscAI CASTG 3 cut(s) 76, 470, 955
TspDTI ATGAA 5 cut(s) 17, 126, 206, 877, 905
TspRI CASTG 3 cut(s) 76, 470, 955
VspI ATTAAT 1 cut(s) 257
XceI RCATGY 1 cut(s) 651
XmiI GTMKAC 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.