Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005563

Physical Location & Seq

Genomic Coordinates Forward (+)

48915158 .. 48918629

Gene Structure 3472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCCATTGAGGAGCTCCGGCGCCTTCATCGCACCGATGTTGCGCGTGGCTCGCAGCACCACCGGCCCGGCGACCATGCGAACAGAGAGTTATGCGTCGCGCACGCGATTGGGAACTCTACCGAACCTCCGATCTATGATTTGTTTGGCTCCGTTGATGGAGGAGATTGGCAACTGTGCTTCTCTTATGTATCTGAATTTATCTTACAATAATCCTTCGGGAGACATACCCTTCTCGGTTTCAAAGCTTAAGAACCTTGAGGTTTTGAATTTGAAGAACAATCGGTTGATCGGTCCTATCGCTACAACTCTTACCCAAATTCGAAACCTTAGAACTCTTAATGTACGGGGAAGACATGTTGCTAAAACCATGAAGACTGTTTCAAGAGGCATGGCTGTTCTTACGAGTTCCGTTTACCATGGACTTTCCAAAGCTGGTAGTTATTATGATTATAATGTTATATTAAATCCATTGCTGGCTCCGTGTGAGTGTGCTGCTACTGCAGGTGAGAGTATCACTAGCCTCGAACAAAGAAAGCTTTTCGGTGGGGATTGCTACATTCTGCAATATACATATCTTGGCAACGAAAGGGATGAGAATCTATTTTATGCATGGCTTGGTGGTAGGAGTGTAATGGAAGATAGAACAGATACTATCTCTCATATGAATGCCATAGTTGAGTCAAGCAAGGGGAATCTTGTTGTGGGAGGCAGGAGTCAACGATACAAGAAGCTTGTGGCAAAAAAGGGTATTGCAGATGAAACTTATGATGAAAGCAAGACAACTCTTTTTCGTGTTCAAGGGACGAGTCCTAACAACATGCAGGCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

277

Amino Acids

30.54

Weight (kDa)

9.57

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	61 - 117	2.4e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0071761
rosa_multiflora	Rmu_sc0000694.1_g000024 Rmu_sc0002285.1_g000031 Rmu_sc0005500.1_g000002 Rmu_sc0013612.1_g000018
rosa_roxburghii	Rroxscaffold_4G00322960 Rroxscaffold_5G00335950 Rroxscaffold_5G00366950 Rroxscaffold_6G00388330 Rroxscaffold_6G00389350 Rroxscaffold_7G00165060 Rroxscaffold_7G00197390
rosa_rugosa	Rorug01G0183100 Rorug01G0183200 Rorug03G0077400 Rorug05G0261600 Rorug05G0261700
rosa_samantha	Rh2AG454500 Rh2BG458700 Rh2CG441600 Rh4CG103500 Rh4CG324600 Rh4DG275900 Rh4DG307600 Rh5CG264700 Rh6CG064500 Rh6CG148200 Rh6DG061500 Rh7CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AarI	CACCTGC	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	494
AccB1I	GGYRCC	1 cut(s)	20
AccII	CGCG	3 cut(s)	45, 100, 106
AcsI	RAATTY	3 cut(s)	196, 268, 318
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	345
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	5 cut(s)	243, 268, 274, 384, 800
AluBI	AGCT	5 cut(s)	15, 247, 434, 538, 733
AluI	AGCT	5 cut(s)	15, 247, 434, 538, 733
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	216
AoxI	GGCC	2 cut(s)	64, 825
ApeKI	GCWGC	2 cut(s)	54, 494
ApoI	RAATTY	3 cut(s)	196, 268, 318
AspLEI	GCGC	3 cut(s)	23, 45, 102
AspS9I	GGNCC	2 cut(s)	65, 293
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	518
AsuII	TTCGAA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	17
BbsI	GAAGAC	2 cut(s)	358, 380
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	66, 481
BccI	CCATC	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	519
BfmI	CTRYAG	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	24
BfrI	CTTAAG	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	494
BisI	GCNGC	2 cut(s)	55, 495
BlsI	GCNGC	2 cut(s)	56, 496
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	65, 293
BmiI	GGNNCC	3 cut(s)	22, 150, 480
BmrFI	CCNGG	1 cut(s)	68
BpiI	GAAGAC	2 cut(s)	358, 380
Bpu14I	TTCGAA	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	597
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bse118I	RCCGGY	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	470
Bse8I	GATNNNNATC	1 cut(s)	597
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	598
BseJI	GATNNNNATC	1 cut(s)	597
BseMI	GCAATG	1 cut(s)	470
BseRI	GAGGAG	2 cut(s)	25, 176
BseXI	GCAGC	2 cut(s)	66, 481
Bsh1236I	CGCG	3 cut(s)	45, 100, 106
BshFI	GGCC	2 cut(s)	66, 827
BshNI	GGYRCC	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	18, 63, 68
BslFI	GGGAC	1 cut(s)	817
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	817
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	2 cut(s)	66, 827
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	131, 288
Bsp19I	CCATGG	1 cut(s)	418
BspANI	GGCC	2 cut(s)	66, 827
BspFNI	CGCG	3 cut(s)	45, 100, 106
BspLI	GGNNCC	3 cut(s)	22, 150, 480
BspMAI	CTGCAG	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	494
BspT104I	TTCGAA	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	470
BsrFI	RCCGGY	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	2 cut(s)	131, 288
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	176, 379
BstACI	GRCGYC	1 cut(s)	21
BstAFI	CTTAAG	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	4 cut(s)	52, 104, 477, 825
BstDEI	CTNAG	1 cut(s)	329
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	3 cut(s)	45, 100, 106
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	3 cut(s)	23, 45, 102
BstKTI	GATC	2 cut(s)	134, 291
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	2 cut(s)	131, 288
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 51, 63, 500
BstNSI	RCATGY	2 cut(s)	359, 823
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	3 cut(s)	45, 100, 106
BstV1I	GCAGC	2 cut(s)	66, 481
BstV2I	GAAGAC	2 cut(s)	358, 380
BsuRI	GGCC	2 cut(s)	66, 827
BtgI	CCRYGG	1 cut(s)	418
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	598
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	4 cut(s)	52, 104, 477, 825
CfoI	GCGC	3 cut(s)	23, 45, 102
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	65, 293
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	7 cut(s)	76, 356, 370, 391, 419, 612, 820
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	1 cut(s)	329
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	2 cut(s)	133, 290
DpnII	GATC	2 cut(s)	131, 288
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	418
EcoT22I	ATGCAT	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	17
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	7 cut(s)	79, 359, 373, 394, 422, 615, 823
FaqI	GGGAC	1 cut(s)	817
FatI	CATG	7 cut(s)	75, 355, 369, 390, 418, 611, 819
FauNDI	CATATG	1 cut(s)	663
Fnu4HI	GCNGC	2 cut(s)	55, 495
FokI	GGATG	1 cut(s)	605
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	55, 495
FspBI	CTAG	1 cut(s)	519
GlaI	GCGC	3 cut(s)	22, 44, 101
GluI	GCNGC	2 cut(s)	55, 495
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	66, 827
HapII	CCGG	3 cut(s)	18, 63, 68
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	3 cut(s)	23, 45, 102
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	7 cut(s)	79, 359, 373, 394, 422, 615, 823
Hin6I	GCGC	3 cut(s)	21, 43, 100
HinP1I	GCGC	3 cut(s)	21, 43, 100
HincII	GTYRAC	1 cut(s)	719
HindII	GTYRAC	1 cut(s)	719
HindIII	AAGCTT	3 cut(s)	245, 536, 731
HinfI	GANTC	5 cut(s)	598, 680, 694, 715, 808
HpaII	CCGG	3 cut(s)	18, 63, 68
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	2 cut(s)	415, 719
Hpy188I	TCNGA	2 cut(s)	131, 195
Hpy188III	TCNNGA	2 cut(s)	219, 384
Hpy8I	GTNNAC	2 cut(s)	415, 719
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	3 cut(s)	34, 225, 241
HpyCH4III	ACNGT	2 cut(s)	176, 379
HpyCH4V	TGCA	5 cut(s)	503, 565, 611, 755, 823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 51, 63, 500
HpyF3I	CTNAG	1 cut(s)	329
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	7 cut(s)	79, 359, 373, 394, 422, 615, 823
HspAI	GCGC	3 cut(s)	21, 43, 100
KasI	GGCGCC	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	131, 288
LmnI	GCTCC	4 cut(s)	12, 20, 154, 484
LpnPI	CCDG	8 cut(s)	31, 76, 81, 420, 461, 489, 697, 809
Lsp1109I	GCAGC	2 cut(s)	66, 481
MaeI	CTAG	1 cut(s)	519
MalI	GATC	2 cut(s)	133, 290
MboI	GATC	2 cut(s)	131, 288
MboII	GAAGA	4 cut(s)	286, 363, 385, 650
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	3 cut(s)	196, 268, 318
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	3 cut(s)	689, 724, 817
MnlI	CCTC	7 cut(s)	3, 137, 154, 253, 380, 533, 701
Mph1103I	ATGCAT	1 cut(s)	613
MseI	TTAA	3 cut(s)	249, 339, 464
MslI	CAYNNNNRTG	1 cut(s)	666
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	3 cut(s)	18, 63, 68
MspR9I	CCNGG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	673
MvnI	CGCG	3 cut(s)	45, 100, 106
MwoI	GCNNNNNNNGC	4 cut(s)	29, 51, 63, 500
NarI	GGCGCC	1 cut(s)	21
NciI	CCSGG	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	418
NdeI	CATATG	1 cut(s)	663
NdeII	GATC	2 cut(s)	131, 288
NlaIII	CATG	7 cut(s)	79, 359, 373, 394, 422, 615, 823
NlaIV	GGNNCC	3 cut(s)	22, 150, 480
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	2 cut(s)	359, 823
NspV	TTCGAA	1 cut(s)	322
PaqCI	CACCTGC	1 cut(s)	494
PciI	ACATGT	1 cut(s)	355
PctI	GAATGC	1 cut(s)	673
PfeI	GAWTC	2 cut(s)	598, 694
PkrI	GCNGC	2 cut(s)	56, 496
PleI	GAGTC	3 cut(s)	688, 723, 816
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	3 cut(s)	688, 723, 816
PscI	ACATGT	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	17
PspN4I	GGNNCC	3 cut(s)	22, 150, 480
PspPI	GGNCC	2 cut(s)	65, 293
PstI	CTGCAG	1 cut(s)	505
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	666
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	249, 339, 464
SatI	GCNGC	2 cut(s)	55, 495
Sau3AI	GATC	2 cut(s)	131, 288
Sau96I	GGNCC	2 cut(s)	65, 293
SchI	GAGTC	3 cut(s)	689, 724, 817
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	17
SfcI	CTRYAG	1 cut(s)	501
SfoI	GGCGCC	1 cut(s)	22
SfuI	TTCGAA	1 cut(s)	322
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	2 cut(s)	248, 257
SmoI	CTYRAG	2 cut(s)	248, 257
Sse9I	AATT	3 cut(s)	196, 268, 318
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	519
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	176, 379
TaqI	TCGA	2 cut(s)	322, 525
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	3 cut(s)	196, 268, 318
TfiI	GAWTC	2 cut(s)	598, 694
Tru1I	TTAA	3 cut(s)	249, 339, 464
Tru9I	TTAA	3 cut(s)	249, 339, 464
TseI	GCWGC	2 cut(s)	54, 494
TspDTI	ATGAA	5 cut(s)	16, 386, 680, 774, 786
TspGWI	ACGGA	3 cut(s)	141, 400, 471
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	3 cut(s)	196, 268, 318
XceI	RCATGY	2 cut(s)	359, 823
XspI	CTAG	1 cut(s)	519
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.