Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005563

Physical Location & Seq

Genomic Coordinates Forward (+)

19152880 .. 19156873

Gene Structure 3994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG103500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCAGGAAGATAGAATAGATAGTATCTCTCATATGAATGCCATAGTTGAGTCAAGCAAGGGGAATCCTGTTGTGGCTCAAATTATGGAGAACAAGGAGCCATCTCAATTTTTTTCAATTTTACAGACATTAATTGTTTTTAAGGGAGGCAGGAGTCAACGATACAAGAAGCTTGTGGCAGAAAAGGGTATTGCAGATGAAACTTATGATGAAAGCAAGACAGCTCTTTTTCGTGTTCAAGGGACGAGTCCTAACAACATGCAGGCCATCCAAGTTGATACAGTTTCAGGCTCTTTGAACTCTTCCTATTGTTACATCCTGCAAACTGGATACATAGATGATCCACATTTGTTTATGTTGAGCGGAACTGAAGGTGGATTTCAAGGTACAGTTTTACATATATTTGTGGCTATCTTTGGACATGAACCATCATTTATGTTGCAGTGGAGATATGTAGGATGCTATTGGTTGTACAATCTGCTTTCTGTTGTATATTTACAGTTCACAGTGCTCATTGAGTTCAAAATTTTTACTTCACTCACTGAGCTTGGCCTATCTGACAACAACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

190

Amino Acids

21.46

Weight (kDa)

5.14

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0071761
rosa_multiflora	Rmu_sc0000694.1_g000024 Rmu_sc0002285.1_g000031 Rmu_sc0005500.1_g000002 Rmu_sc0013612.1_g000018
rosa_roxburghii	Rroxscaffold_4G00322960 Rroxscaffold_5G00335950 Rroxscaffold_5G00366950 Rroxscaffold_6G00388330 Rroxscaffold_6G00389350 Rroxscaffold_7G00165060 Rroxscaffold_7G00197390
rosa_rugosa	Rorug01G0183100 Rorug01G0183200 Rorug03G0077400 Rorug05G0261600 Rorug05G0261700
rosa_samantha	Rh2AG454500 Rh2BG458700 Rh2CG441600 Rh4CG103500 Rh4CG324600 Rh4DG275900 Rh4DG307600 Rh5CG264700 Rh6CG064500 Rh6CG148200 Rh6DG061500 Rh7CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	363
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	2 cut(s)	388, 473
AgsI	TTSAA	5 cut(s)	117, 239, 298, 383, 523
AluBI	AGCT	3 cut(s)	172, 224, 547
AluI	AGCT	3 cut(s)	172, 224, 547
Alw21I	GWGCWC	1 cut(s)	513
AlwI	GGATC	1 cut(s)	335
AoxI	GGCC	2 cut(s)	264, 550
ApoI	RAATTY	1 cut(s)	525
AseI	ATTAAT	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	513
BccI	CCATC	3 cut(s)	109, 275, 436
BciVI	GTATCC	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	99
BmsI	GCATC	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	331
BseGI	GGATG	3 cut(s)	267, 315, 464
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	266, 552
BsiHKAI	GWGCWC	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	266, 552
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	2 cut(s)	266, 552
BspCNI	CTCAG	1 cut(s)	535
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	331
BssMI	GATC	1 cut(s)	340
Bst4CI	ACNGT	4 cut(s)	283, 391, 501, 508
Bst6I	CTCTTC	1 cut(s)	307
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	543
BstF5I	GGATG	3 cut(s)	267, 315, 464
BstKTI	GATC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	266, 552
BtsCI	GGATG	3 cut(s)	267, 315, 464
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	3 cut(s)	449, 513, 540
Cac8I	GCNNGC	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	387, 472
CviAII	CATG	2 cut(s)	259, 422
CviJI	RGCY	9 cut(s)	77, 100, 172, 224, 266, 291, 410, 547, 552
CviKI_1	RGCY	9 cut(s)	77, 100, 172, 224, 266, 291, 410, 547, 552
CviQI	GTAC	2 cut(s)	387, 472
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	390
FaeI	CATG	2 cut(s)	262, 425
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	2 cut(s)	258, 421
FauNDI	CATATG	1 cut(s)	33
FokI	GGATG	3 cut(s)	254, 302, 471
HaeIII	GGCC	2 cut(s)	266, 552
Hin1II	CATG	2 cut(s)	262, 425
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	4 cut(s)	50, 64, 154, 247
Hpy166II	GTNNAC	2 cut(s)	158, 504
Hpy188I	TCNGA	1 cut(s)	559
Hpy8I	GTNNAC	2 cut(s)	158, 504
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	4 cut(s)	283, 391, 501, 508
HpyCH4V	TGCA	5 cut(s)	4, 194, 262, 322, 442
HpyF3I	CTNAG	1 cut(s)	543
Hsp92II	CATG	2 cut(s)	262, 425
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	6 cut(s)	81, 136, 248, 273, 312, 332
LweI	GCATC	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	342
MbiI	CCGCTC	1 cut(s)	363
MboI	GATC	1 cut(s)	340
MboII	GAAGA	2 cut(s)	20, 294
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	5 cut(s)	81, 107, 117, 132, 525
MlyI	GAGTC	3 cut(s)	59, 163, 256
MnlI	CCTC	1 cut(s)	140
MseI	TTAA	2 cut(s)	131, 141
MslI	CAYNNNNRTG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	43
NdeI	CATATG	1 cut(s)	33
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	2 cut(s)	262, 425
NlaIV	GGNNCC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	262
PctI	GAATGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	64
PleI	GAGTC	3 cut(s)	58, 162, 255
PpsI	GAGTC	3 cut(s)	58, 162, 255
PshBI	ATTAAT	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	99
RsaI	GTAC	2 cut(s)	388, 473
RsaNI	GTAC	2 cut(s)	387, 472
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	131, 141
Sau3AI	GATC	1 cut(s)	340
SchI	GAGTC	3 cut(s)	59, 163, 256
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	5 cut(s)	174, 226, 376, 388, 549
SfaNI	GCATC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	5 cut(s)	81, 107, 117, 132, 525
SsiI	CCGC	1 cut(s)	363
TaaI	ACNGT	4 cut(s)	283, 391, 501, 508
TasI	AATT	5 cut(s)	81, 107, 117, 132, 525
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	131, 141
Tru9I	TTAA	2 cut(s)	131, 141
TscAI	CASTG	3 cut(s)	449, 513, 547
TspDTI	ATGAA	4 cut(s)	50, 213, 225, 438
TspRI	CASTG	3 cut(s)	449, 513, 547
VspI	ATTAAT	1 cut(s)	131
XapI	RAATTY	1 cut(s)	525
XceI	RCATGY	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.