Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005563

Physical Location & Seq

Genomic Coordinates Forward (+)

6377379 .. 6385109

Gene Structure 7731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG064500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGGAGCCCGGCGCCCTCCCAACGCTAGCCACCTATATACGGCTAGTTTCTCAATGCGGCTTTCATGCCGCTGTTCATCATTCTTCTCAAGTCTCGACGCCTGCCGACGAGTTTATTTTTGGCCATTGACGTCGCCTTATACCAAGGGAGTGTGCTGTGTGCAACACTCGAGCGACATATATATTGCATCGTTCATTTATGGCGGTTTTTGTTCGCTGTCCTCTTACAGGTTGGGGCGGGGGGTGTTGGGGGGTGTGACTTGTGATGCCAATTGCTCGGAGGGGAGATGGGTTCCCATCTCTTCATATCGACGAAGGTTGAGACCAGATTCGACTCCATGCTGCTGGGTTTGGTGGTTAGATGGTGATAGACTGTCCCTTGTTCCAGCCTCAGAACAAAGAAAGCTTTTCAGTGGGGATTGCTACATTCTGCAATATACATATCTTGGCAACGAAAGGGATGAGAATCTATTTTATGCATGGCTTGGTGGTGGGAGTGTAATGGAAGATAGAACAGATACTATCTCTCATATGAATGCCATAGTTGAGTCAAGCAGGGGGAATCCTGTTGTGGCTCAAATTATGGAGAACAAGGAGCCATCTCAATTATTTTTCAATTTTACAGACATTAATTGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

213

Amino Acids

24.15

Weight (kDa)

7.96

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0071761
rosa_multiflora	Rmu_sc0000694.1_g000024 Rmu_sc0002285.1_g000031 Rmu_sc0005500.1_g000002 Rmu_sc0013612.1_g000018
rosa_roxburghii	Rroxscaffold_4G00322960 Rroxscaffold_5G00335950 Rroxscaffold_5G00366950 Rroxscaffold_6G00388330 Rroxscaffold_6G00389350 Rroxscaffold_7G00165060 Rroxscaffold_7G00197390
rosa_rugosa	Rorug01G0183100 Rorug01G0183200 Rorug03G0077400 Rorug05G0261600 Rorug05G0261700
rosa_samantha	Rh2AG454500 Rh2BG458700 Rh2CG441600 Rh4CG103500 Rh4CG324600 Rh4DG275900 Rh4DG307600 Rh5CG264700 Rh6CG064500 Rh6CG148200 Rh6DG061500 Rh7CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	12
AciI	CCGC	4 cut(s)	58, 70, 204, 238
AcoI	YGGCCR	1 cut(s)	122
AcyI	GRCGYC	3 cut(s)	13, 99, 131
AfiI	CCNNNNNNNGG	2 cut(s)	40, 228
AgsI	TTSAA	1 cut(s)	616
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	98, 316
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	342
AseI	ATTAAT	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	15
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	377
AsuNHI	GCTAGC	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	4 cut(s)	282, 305, 356, 607
BceAI	ACGGC	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	98, 316
BfaI	CTAG	2 cut(s)	27, 45
BfoI	RGCGCY	1 cut(s)	16
BisI	GCNGC	3 cut(s)	59, 70, 343
BlsI	GCNGC	3 cut(s)	60, 71, 344
Bme1390I	CCNGG	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	169
BmiI	GGNNCC	4 cut(s)	7, 14, 294, 597
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	2 cut(s)	197, 256
BmtI	GCTAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	3 cut(s)	13, 99, 131
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 228
Bse8I	GATNNNNATC	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	40, 228
BseMII	CTCAG	1 cut(s)	405
BseXI	GCAGC	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	345
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	40, 228
BsmAI	GTCTC	2 cut(s)	98, 316
BsmFI	GGGAC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	10
BspACI	CCGC	4 cut(s)	58, 70, 204, 238
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	404
BspLI	GGNNCC	4 cut(s)	7, 14, 294, 597
BspOI	GCTAGC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	144
BssNI	GRCGYC	3 cut(s)	13, 99, 131
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	307
BstACI	GRCGYC	3 cut(s)	13, 99, 131
BstC8I	GCNNGC	2 cut(s)	28, 103
BstDEI	CTNAG	1 cut(s)	391
BstENI	CCTNNNNNAGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	466
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	15
BstMAI	GTCTC	2 cut(s)	98, 316
BstSCI	CCNGG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	329
BstXI	CCANNNNNNTGG	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	418
Cac8I	GCNNGC	2 cut(s)	28, 103
CfoI	GCGC	1 cut(s)	15
CseI	GACGC	1 cut(s)	107
CviAII	CATG	3 cut(s)	66, 339, 480
DdeI	CTNAG	1 cut(s)	391
DinI	GGCGCC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	169
EcoNI	CCTNNNNNAGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	10
EgeI	GGCGCC	1 cut(s)	14
EheI	GGCGCC	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	3 cut(s)	69, 342, 483
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	3 cut(s)	65, 338, 479
FauI	CCCGC	1 cut(s)	231
FauNDI	CATATG	1 cut(s)	531
Fnu4HI	GCNGC	3 cut(s)	59, 70, 343
FokI	GGATG	1 cut(s)	473
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	3 cut(s)	59, 70, 343
FspBI	CTAG	2 cut(s)	27, 45
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	3 cut(s)	59, 70, 343
GsaI	CCCAGC	1 cut(s)	349
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	15
Hin1I	GRCGYC	3 cut(s)	13, 99, 131
Hin1II	CATG	3 cut(s)	69, 342, 483
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	5 cut(s)	329, 334, 466, 548, 562
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	280, 394
Hpy188III	TCNNGA	1 cut(s)	95
Hpy99I	CGWCG	4 cut(s)	101, 111, 136, 315
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	4 cut(s)	163, 188, 433, 479
HpyF3I	CTNAG	1 cut(s)	391
HpySE526I	ACGT	1 cut(s)	131
Hsp92I	GRCGYC	3 cut(s)	13, 99, 131
Hsp92II	CATG	3 cut(s)	69, 342, 483
HspAI	GCGC	1 cut(s)	13
KasI	GGCGCC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	5, 595
LpnPI	CCDG	8 cut(s)	23, 115, 214, 331, 339, 399, 541, 579
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	2 cut(s)	197, 256
MaeI	CTAG	2 cut(s)	27, 45
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	256
MboII	GAAGA	3 cut(s)	76, 294, 518
MfeI	CAATTG	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	10
MlsI	TGGCCA	1 cut(s)	124
MluCI	AATT	5 cut(s)	271, 579, 605, 616, 631
MluNI	TGGCCA	1 cut(s)	124
Mly113I	GGCGCC	1 cut(s)	13
MlyI	GAGTC	2 cut(s)	328, 557
MnlI	CCTC	4 cut(s)	27, 232, 274, 400
Mox20I	TGGCCA	1 cut(s)	124
Mph1103I	ATGCAT	1 cut(s)	481
MscI	TGGCCA	1 cut(s)	124
MseI	TTAA	2 cut(s)	630, 640
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	124
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	10
MunI	CAATTG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	541
NarI	GGCGCC	1 cut(s)	13
NciI	CCSGG	1 cut(s)	10
NdeI	CATATG	1 cut(s)	531
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	3 cut(s)	69, 342, 483
NlaIV	GGNNCC	4 cut(s)	7, 14, 294, 597
NmuCI	GTSAC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	169
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	3 cut(s)	329, 466, 562
PkrI	GCNGC	3 cut(s)	60, 71, 344
PleI	GAGTC	2 cut(s)	328, 556
PluTI	GGCGCC	1 cut(s)	16
PpsI	GAGTC	2 cut(s)	328, 556
PshBI	ATTAAT	1 cut(s)	630
PspFI	CCCAGC	1 cut(s)	345
PspN4I	GGNNCC	4 cut(s)	7, 14, 294, 597
PspXI	VCTCGAGB	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	630, 640
SatI	GCNGC	3 cut(s)	59, 70, 343
SchI	GAGTC	2 cut(s)	328, 557
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	5 cut(s)	36, 134, 233, 320, 408
SfaNI	GCATC	2 cut(s)	197, 256
SfoI	GGCGCC	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	169
SlaI	CTCGAG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	2 cut(s)	88, 169
SmoI	CTYRAG	2 cut(s)	88, 169
Sse9I	AATT	5 cut(s)	271, 579, 605, 616, 631
SsiI	CCGC	4 cut(s)	58, 70, 204, 238
SspDI	GGCGCC	1 cut(s)	12
SspMI	CTAG	2 cut(s)	27, 45
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	375
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	4 cut(s)	96, 170, 310, 332
TasI	AATT	5 cut(s)	271, 579, 605, 616, 631
TauI	GCSGC	2 cut(s)	61, 72
TfiI	GAWTC	3 cut(s)	329, 466, 562
Tru1I	TTAA	2 cut(s)	630, 640
Tru9I	TTAA	2 cut(s)	630, 640
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	5 cut(s)	54, 66, 184, 294, 548
TspRI	CASTG	1 cut(s)	418
VspI	ATTAAT	1 cut(s)	630
XagI	CCTNNNNNAGG	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	169
XspI	CTAG	2 cut(s)	27, 45
ZraI	GACGTC	1 cut(s)	132
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.