Rroxscaffold_5G00335950

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005563
Physical Location & Seq
Reverse (-)
3649774 .. 3655321
5548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00335950.1

Sequence Viewer

Length: 843 bp
ATGCCATTGAGGAGCTCCGGCGCCTTCATCGCACCGATGTTGCGCGTGGCTCGCAGCACCACCGGCCCGGCGACCATGCGAACAGAGAGTTATGCGTCGCGCACGCGATTGGGAACTCGCCGTAACCTCCGATCTATGATTTGTTTGGCTCCGTTGATGGAGGAGATTGGCAACCGTGCTTCTCTTATGAATTTATCTTACAATAATCCTTCCGGAGACATACCCTTCTCGGTTTCAAAGCTTAAGAACCTTGAGAATTTGAAGAACAATCGGTTGATGGTCCTATCGCTACAACTCTTACCCAAATTCGAAACCTTAGAACTCGGAAGACATGTTGCTAAAACCATGAAGACTGTTTCAAGAGGTATGGCTGTTCTTACAGCTTCCGTTTACCATGGACTTTCCAAAGGAGATACACTAGTTGGAGAGCTGATCAAGATGGAGGCTGATATCCTCCTATCTCTGAAATTTGAAATGGGAAATCTCAATGTTGGTACATCCTTGAGAAAATTCATTGATCTTGCTCAAGGGAGTTACTACAAAAATTGGGCCTCCAACATGAATTGGCCCACCAAATTGATCGGGTACATAACCCAATTTAGGTTCACCCTCTCGCTGCACCGTTCACGATTGCGGACTCTAAACTTTGGTTCTTCTAGAAGAGCTTTCACCGTCCGGTTCACCGCCCGCGAAAGCTTCGTCACAACCCTCTTCGACTCGCCCGGGCTGTCATACCGGTTTGATGCACGGTATGCCCAGGTCATCATCGGTCTTCGCGTGCAAGCCGCTACCACACCCATTTCACTACCCACAGATCGGAATACCGCTTGGGGCGTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

280

Amino Acids

31.39

Weight (kDa)

10.71

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccII CGCG 5 cut(s) 45, 100, 106, 690, 777
AccIII TCCGGA 1 cut(s) 212
AciI CCGC 5 cut(s) 634, 684, 688, 786, 825
AcsI RAATTY 5 cut(s) 190, 256, 305, 467, 509
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 2 cut(s) 496, 587
AfiI CCNNNNNNNGG 2 cut(s) 600, 816
AflII CTTAAG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 331
AgeI ACCGGT 1 cut(s) 735
AgsI TTSAA 4 cut(s) 237, 262, 360, 473
AhlI ACTAGT 1 cut(s) 418
AjnI CCWGG 1 cut(s) 756
AluBI AGCT 6 cut(s) 15, 241, 383, 430, 665, 696
AluI AGCT 6 cut(s) 15, 241, 383, 430, 665, 696
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 210
Ama87I CYCGRG 1 cut(s) 722
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 3 cut(s) 64, 549, 566
ApeKI GCWGC 2 cut(s) 54, 616
ApoI RAATTY 5 cut(s) 190, 256, 305, 467, 509
ArsI GACNNNNNNTTYG 2 cut(s) 684, 716
AsiGI ACCGGT 1 cut(s) 735
AspLEI GCGC 3 cut(s) 23, 45, 102
AspS9I GGNCC 4 cut(s) 65, 280, 549, 567
AsuC2I CCSGG 3 cut(s) 68, 723, 724
AsuHPI GGTGA 3 cut(s) 598, 661, 673
AsuII TTCGAA 1 cut(s) 309
AvaI CYCGRG 1 cut(s) 722
AvaII GGWCC 1 cut(s) 280
BaeI ACNNNNGTAYC 2 cut(s) 405, 438
BanI GGYRCC 1 cut(s) 20
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 3 cut(s) 334, 356, 764
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 66, 603
BccI CCATC 3 cut(s) 151, 271, 433
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 758
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 3 cut(s) 68, 723, 724
BcoDI GTCTC 1 cut(s) 210
BcuI ACTAGT 1 cut(s) 418
BfaI CTAG 2 cut(s) 419, 657
BfoI RGCGCY 1 cut(s) 24
BfrI CTTAAG 1 cut(s) 242
BisI GCNGC 3 cut(s) 55, 617, 786
BlsI GCNGC 3 cut(s) 56, 618, 787
Bme1390I CCNGG 4 cut(s) 68, 723, 724, 758
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 722
BmgT120I GGNCC 4 cut(s) 65, 280, 549, 567
BmiI GGNNCC 2 cut(s) 22, 150
BmrFI CCNGG 4 cut(s) 68, 723, 724, 758
BmsI GCATC 1 cut(s) 733
BpiI GAAGAC 3 cut(s) 334, 356, 764
Bpu14I TTCGAA 1 cut(s) 309
BpuEI CTTGAG 3 cut(s) 272, 510, 523
BpuMI CCSGG 3 cut(s) 68, 723, 724
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 394, 722, 756
BsaWI WCCGGW 3 cut(s) 212, 675, 735
Bsc4I CCNNNNNNNGG 2 cut(s) 600, 816
Bse118I RCCGGY 2 cut(s) 62, 735
BseAI TCCGGA 1 cut(s) 212
BseBI CCWGG 1 cut(s) 758
BseDI CCNNGG 3 cut(s) 394, 722, 756
BseGI GGATG 1 cut(s) 497
BseLI CCNNNNNNNGG 2 cut(s) 600, 816
BseRI GAGGAG 2 cut(s) 25, 176
BseXI GCAGC 2 cut(s) 66, 603
BsgI GTGCAG 1 cut(s) 602
Bsh1236I CGCG 5 cut(s) 45, 100, 106, 690, 777
BshFI GGCC 3 cut(s) 66, 551, 568
BshNI GGYRCC 1 cut(s) 20
BshTI ACCGGT 1 cut(s) 735
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 722
BsiSI CCGG 7 cut(s) 18, 63, 68, 213, 676, 723, 736
BslI CCNNNNNNNGG 2 cut(s) 600, 816
BsmAI GTCTC 1 cut(s) 210
BsnI GGCC 3 cut(s) 66, 551, 568
BsoBI CYCGRG 1 cut(s) 722
Bsp119I TTCGAA 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 17
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 5 cut(s) 131, 432, 517, 579, 814
Bsp19I CCATGG 1 cut(s) 394
BspACI CCGC 5 cut(s) 634, 684, 688, 786, 825
BspANI GGCC 3 cut(s) 66, 551, 568
BspEI TCCGGA 1 cut(s) 212
BspFNI CGCG 5 cut(s) 45, 100, 106, 690, 777
BspLI GGNNCC 2 cut(s) 22, 150
BspQI GCTCTTC 1 cut(s) 655
BspT104I TTCGAA 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 20
BspTI CTTAAG 1 cut(s) 242
BsrFI RCCGGY 2 cut(s) 62, 735
BssAI RCCGGY 2 cut(s) 62, 735
BssECI CCNNGG 3 cut(s) 394, 722, 756
BssMI GATC 5 cut(s) 131, 432, 517, 579, 814
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 758
Bst4CI ACNGT 5 cut(s) 176, 355, 623, 673, 750
Bst6I CTCTTC 2 cut(s) 655, 716
BstACI GRCGYC 1 cut(s) 21
BstAFI CTTAAG 1 cut(s) 242
BstAPI GCANNNNNTGC 1 cut(s) 752
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 5 cut(s) 52, 104, 688, 779, 783
BstDEI CTNAG 1 cut(s) 316
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 1 cut(s) 497
BstFNI CGCG 5 cut(s) 45, 100, 106, 690, 777
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 3 cut(s) 23, 45, 102
BstKTI GATC 5 cut(s) 134, 435, 520, 582, 817
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 5 cut(s) 131, 432, 517, 579, 814
BstMWI GCNNNNNNNGC 4 cut(s) 29, 51, 63, 752
BstNI CCWGG 1 cut(s) 758
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 4 cut(s) 66, 721, 722, 756
BstUI CGCG 5 cut(s) 45, 100, 106, 690, 777
BstV1I GCAGC 2 cut(s) 66, 603
BstV2I GAAGAC 3 cut(s) 334, 356, 764
BsuRI GGCC 3 cut(s) 66, 551, 568
BtgI CCRYGG 1 cut(s) 394
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 1 cut(s) 497
Cac8I GCNNGC 5 cut(s) 52, 104, 688, 779, 783
CfoI GCGC 3 cut(s) 23, 45, 102
Cfr10I RCCGGY 2 cut(s) 62, 735
Cfr13I GGNCC 4 cut(s) 65, 280, 549, 567
Cfr9I CCCGGG 1 cut(s) 722
CseI GACGC 1 cut(s) 84
Csp6I GTAC 2 cut(s) 495, 586
CspAI ACCGGT 1 cut(s) 735
CviAII CATG 5 cut(s) 76, 332, 346, 395, 559
CviQI GTAC 2 cut(s) 495, 586
DdeI CTNAG 1 cut(s) 316
DinI GGCGCC 1 cut(s) 22
DpnI GATC 5 cut(s) 133, 434, 519, 581, 816
DpnII GATC 5 cut(s) 131, 432, 517, 579, 814
Eam1104I CTCTTC 2 cut(s) 655, 716
EarI CTCTTC 2 cut(s) 655, 716
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 17
Eco32I GATATC 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 722
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 756
EcoRV GATATC 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 17
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 5 cut(s) 79, 335, 349, 398, 562
FatI CATG 5 cut(s) 75, 331, 345, 394, 558
FauI CCCGC 1 cut(s) 695
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 3 cut(s) 55, 617, 786
FokI GGATG 1 cut(s) 484
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 55, 617, 786
FspBI CTAG 2 cut(s) 419, 657
GlaI GCGC 3 cut(s) 22, 44, 101
GluI GCNGC 3 cut(s) 55, 617, 786
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 3 cut(s) 66, 551, 568
HapII CCGG 7 cut(s) 18, 63, 68, 213, 676, 723, 736
HgaI GACGC 1 cut(s) 84
HhaI GCGC 3 cut(s) 23, 45, 102
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 5 cut(s) 79, 335, 349, 398, 562
Hin6I GCGC 3 cut(s) 21, 43, 100
HinP1I GCGC 3 cut(s) 21, 43, 100
HindIII AAGCTT 2 cut(s) 239, 694
HinfI GANTC 2 cut(s) 637, 716
HpaII CCGG 7 cut(s) 18, 63, 68, 213, 676, 723, 736
HphI GGTGA 3 cut(s) 598, 661, 673
Hpy166II GTNNAC 4 cut(s) 391, 606, 626, 681
Hpy188I TCNGA 4 cut(s) 131, 326, 465, 819
Hpy188III TCNNGA 5 cut(s) 213, 360, 436, 627, 657
Hpy8I GTNNAC 4 cut(s) 391, 606, 626, 681
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 3 cut(s) 34, 219, 235
HpyCH4III ACNGT 5 cut(s) 176, 355, 623, 673, 750
HpyCH4V TGCA 3 cut(s) 619, 746, 781
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 51, 63, 752
HpyF3I CTNAG 1 cut(s) 316
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 5 cut(s) 79, 335, 349, 398, 562
HspAI GCGC 3 cut(s) 21, 43, 100
KasI GGCGCC 1 cut(s) 20
Kpn2I TCCGGA 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 5 cut(s) 131, 432, 517, 579, 814
LguI GCTCTTC 1 cut(s) 655
LmnI GCTCC 3 cut(s) 12, 20, 154
LpnPI CCDG 9 cut(s) 31, 76, 81, 226, 689, 736, 743, 749, 770
Lsp1109I GCAGC 2 cut(s) 66, 603
LweI GCATC 1 cut(s) 733
MaeI CTAG 2 cut(s) 419, 657
MaeIII GTNAC 3 cut(s) 122, 533, 700
MalI GATC 5 cut(s) 133, 434, 519, 581, 816
MboI GATC 5 cut(s) 131, 432, 517, 579, 814
MboII GAAGA 7 cut(s) 274, 339, 361, 645, 672, 703, 764
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 9 cut(s) 190, 256, 305, 467, 509, 544, 562, 575, 596
Mly113I GGCGCC 1 cut(s) 21
MlyI GAGTC 2 cut(s) 631, 710
MmeI TCCRAC 2 cut(s) 403, 579
MnlI CCTC 9 cut(s) 3, 137, 154, 356, 436, 464, 562, 620, 719
MroI TCCGGA 1 cut(s) 212
MseI TTAA 1 cut(s) 243
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 7 cut(s) 18, 63, 68, 213, 676, 723, 736
MspR9I CCNGG 4 cut(s) 68, 723, 724, 758
MvaI CCWGG 1 cut(s) 758
MvnI CGCG 5 cut(s) 45, 100, 106, 690, 777
MwoI GCNNNNNNNGC 4 cut(s) 29, 51, 63, 752
NarI GGCGCC 1 cut(s) 21
NciI CCSGG 3 cut(s) 68, 723, 724
NcoI CCATGG 1 cut(s) 394
NdeII GATC 5 cut(s) 131, 432, 517, 579, 814
NlaIII CATG 5 cut(s) 79, 335, 349, 398, 562
NlaIV GGNNCC 2 cut(s) 22, 150
NmuCI GTSAC 1 cut(s) 700
NspI RCATGY 1 cut(s) 335
NspV TTCGAA 1 cut(s) 309
PciI ACATGT 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 655
PcsI WCGNNNNNNNCGW 1 cut(s) 774
PinAI ACCGGT 1 cut(s) 735
PkrI GCNGC 3 cut(s) 56, 618, 787
PleI GAGTC 2 cut(s) 631, 710
PluTI GGCGCC 1 cut(s) 24
PpsI GAGTC 2 cut(s) 631, 710
PscI ACATGT 1 cut(s) 331
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 756
PspGI CCWGG 1 cut(s) 756
PspN4I GGNNCC 2 cut(s) 22, 150
PspPI GGNCC 4 cut(s) 65, 280, 549, 567
RsaI GTAC 2 cut(s) 496, 587
RsaNI GTAC 2 cut(s) 495, 586
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 655
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 3 cut(s) 55, 617, 786
Sau3AI GATC 5 cut(s) 131, 432, 517, 579, 814
Sau96I GGNCC 4 cut(s) 65, 280, 549, 567
SchI GAGTC 2 cut(s) 631, 710
ScrFI CCNGG 4 cut(s) 68, 723, 724, 758
SduI GDGCHC 1 cut(s) 17
SfaNI GCATC 1 cut(s) 733
SfoI GGCGCC 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 309
SinI GGWCC 1 cut(s) 280
SmaI CCCGGG 1 cut(s) 724
SmlI CTYRAG 4 cut(s) 242, 251, 502, 525
SmoI CTYRAG 4 cut(s) 242, 251, 502, 525
SpeI ACTAGT 1 cut(s) 418
SrfI GCCCGGGC 1 cut(s) 724
Sse9I AATT 9 cut(s) 190, 256, 305, 467, 509, 544, 562, 575, 596
SsiI CCGC 5 cut(s) 634, 684, 688, 786, 825
SspDI GGCGCC 1 cut(s) 20
SspMI CTAG 2 cut(s) 419, 657
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 4 cut(s) 66, 721, 722, 756
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 5 cut(s) 176, 355, 623, 673, 750
TaqI TCGA 2 cut(s) 309, 714
TaqII GACCGA 1 cut(s) 758
TasI AATT 9 cut(s) 190, 256, 305, 467, 509, 544, 562, 575, 596
TauI GCSGC 1 cut(s) 788
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 2 cut(s) 54, 616
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 5 cut(s) 16, 203, 362, 502, 575
TspGWI ACGGA 2 cut(s) 141, 376
TspMI CCCGGG 1 cut(s) 722
Vha464I CTTAAG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 280
XapI RAATTY 5 cut(s) 190, 256, 305, 467, 509
XbaI TCTAGA 1 cut(s) 656
XceI RCATGY 1 cut(s) 335
XmaI CCCGGG 1 cut(s) 722
XspI CTAG 2 cut(s) 419, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.