Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005563

Physical Location & Seq

Genomic Coordinates Forward (+)

66860260 .. 66867853

Gene Structure 7594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG454500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAGGCCTCCACCTATGCGCCACCAACAAAGGCAAGCAAATACGCGTGCGGTGATGGAGGGTAGAGGAGCGGCGGCCATGGCCGTGCTCGTTTGGTGGGTAGATGGTGATAGACTGTCCCTTGTTCCAGCCTCAGAACAAAGAAAGCTTTTCAGTGGGGATTGCTACATTCTGCAATATACATATCTTGGCAACGAAAGGGATGAGAATCTATTTTATGCATGGCTTGGTGGTGGGAGTGTAATGGAAGATAGAACAGATACTATCTCTCATATGAATGCCATAGTTGAGTCAAGCAAGGGGAATCCTGTTGTGGCTCAAATTATGGAGAACAAGGAGCCATCTCAATTTTTTTCAATTTTACAGACATTAATTGTTTTTAAGGGAGGCAGGAGTCAACGATACAAGAAGCTTGTGGCAGAAAAGGGTATTGCAGATGAAACTTATGATAAAAGCAAGACAGCTCTTTTTCGTGTTCAAGGGACAAGTCCTAACAACATGCAGGCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

170

Amino Acids

19.15

Weight (kDa)

9.04

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7904	PF25480	38 - 127	3e-06	Domain of unknown function (DUF7904)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0071761
rosa_multiflora	Rmu_sc0000694.1_g000024 Rmu_sc0002285.1_g000031 Rmu_sc0005500.1_g000002 Rmu_sc0013612.1_g000018
rosa_roxburghii	Rroxscaffold_4G00322960 Rroxscaffold_5G00335950 Rroxscaffold_5G00366950 Rroxscaffold_6G00388330 Rroxscaffold_6G00389350 Rroxscaffold_7G00165060 Rroxscaffold_7G00197390
rosa_rugosa	Rorug01G0183100 Rorug01G0183200 Rorug03G0077400 Rorug05G0261600 Rorug05G0261700
rosa_samantha	Rh2AG454500 Rh2BG458700 Rh2CG441600 Rh4CG103500 Rh4CG324600 Rh4DG275900 Rh4DG307600 Rh5CG264700 Rh6CG064500 Rh6CG148200 Rh6DG061500 Rh7CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	71
AccII	CGCG	1 cut(s)	46
AciI	CCGC	3 cut(s)	50, 71, 74
AcoI	YGGCCR	2 cut(s)	75, 81
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	357, 479
AluBI	AGCT	3 cut(s)	148, 412, 464
AluI	AGCT	3 cut(s)	148, 412, 464
Alw21I	GWGCWC	1 cut(s)	90
AoxI	GGCC	4 cut(s)	5, 75, 81, 504
AseI	ATTAAT	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	64, 119
Bbv12I	GWGCWC	1 cut(s)	90
BccI	CCATC	3 cut(s)	49, 98, 349
BceAI	ACGGC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	72, 75
BlsI	GCNGC	2 cut(s)	73, 76
BmiI	GGNNCC	1 cut(s)	339
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	4 cut(s)	7, 77, 83, 506
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	103, 496
BsmFI	GGGAC	2 cut(s)	103, 496
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	4 cut(s)	7, 77, 83, 506
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	3 cut(s)	50, 71, 74
BspANI	GGCC	4 cut(s)	7, 77, 83, 506
BspCNI	CTCAG	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	339
BsrBI	CCGCTC	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	36, 48, 504
BstDEI	CTNAG	1 cut(s)	133
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	502
BstUI	CGCG	1 cut(s)	46
BsuRI	GGCC	4 cut(s)	7, 77, 83, 506
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	3 cut(s)	36, 48, 504
CfoI	GCGC	1 cut(s)	21
CviAII	CATG	3 cut(s)	79, 222, 499
DdeI	CTNAG	1 cut(s)	133
EaeI	YGGCCR	2 cut(s)	75, 81
Eco130I	CCWWGG	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	3 cut(s)	82, 225, 502
FaqI	GGGAC	2 cut(s)	103, 496
FatI	CATG	3 cut(s)	78, 221, 498
FauNDI	CATATG	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	72, 75
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	72, 75
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	2 cut(s)	72, 75
HaeIII	GGCC	4 cut(s)	7, 77, 83, 506
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	82, 225, 502
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	398
HindII	GTYRAC	1 cut(s)	398
HindIII	AAGCTT	2 cut(s)	146, 410
HinfI	GANTC	4 cut(s)	208, 290, 304, 394
HphI	GGTGA	2 cut(s)	64, 119
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	398
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4V	TGCA	4 cut(s)	175, 221, 434, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	133
Hsp92II	CATG	3 cut(s)	82, 225, 502
HspAI	GCGC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	68, 337
LpnPI	CCDG	4 cut(s)	141, 321, 376, 488
MbiI	CCGCTC	1 cut(s)	71
MboII	GAAGA	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	4 cut(s)	321, 347, 357, 372
MluI	ACGCGT	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	299, 403
MnlI	CCTC	5 cut(s)	18, 52, 59, 142, 380
Mph1103I	ATGCAT	1 cut(s)	223
MseI	TTAA	2 cut(s)	371, 381
MslI	CAYNNNNRTG	2 cut(s)	83, 276
Mva1269I	GAATGC	1 cut(s)	283
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	78
NdeI	CATATG	1 cut(s)	273
NlaIII	CATG	3 cut(s)	82, 225, 502
NlaIV	GGNNCC	1 cut(s)	339
NsiI	ATGCAT	1 cut(s)	223
NspI	RCATGY	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	7
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	208, 304
PkrI	GCNGC	2 cut(s)	73, 76
PleI	GAGTC	2 cut(s)	298, 402
PpsI	GAGTC	2 cut(s)	298, 402
PshBI	ATTAAT	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	339
RseI	CAYNNNNRTG	2 cut(s)	83, 276
SaqAI	TTAA	2 cut(s)	371, 381
SatI	GCNGC	2 cut(s)	72, 75
SchI	GAGTC	2 cut(s)	299, 403
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	4 cut(s)	16, 150, 414, 466
SmiMI	CAYNNNNRTG	2 cut(s)	83, 276
Sse9I	AATT	4 cut(s)	321, 347, 357, 372
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	3 cut(s)	50, 71, 74
StuI	AGGCCT	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	117
TasI	AATT	4 cut(s)	321, 347, 357, 372
TauI	GCSGC	2 cut(s)	74, 77
TfiI	GAWTC	2 cut(s)	208, 304
Tru1I	TTAA	2 cut(s)	371, 381
Tru9I	TTAA	2 cut(s)	371, 381
TscAI	CASTG	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	290, 453
TspRI	CASTG	1 cut(s)	160
VspI	ATTAAT	1 cut(s)	371
XceI	RCATGY	1 cut(s)	502
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.