Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005563

Physical Location & Seq

Genomic Coordinates Forward (+)

6059750 .. 6062492

Gene Structure 2743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0077400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAGTTCACCAACCAGAGCAAATGTATCTGCTTGGCCTTAATCCTCATGTTGGGAGCATGGTCTTCGGAAGCCACCTCTCGTAGTCTCCAAGATGCATTAGCTTATGGGAGGTATGAGCAATGGATAGCTCGTTATGGACGTGCATATAATGATATCAAGGAGAAGGAGGACCGCTTCAAGATATTCAAGGAGAATGAGGCATTCATAGAATCTTCCAACAACAATGGAAACAAACTTTACAAATTGAGTCTGAACCAATTTGCAGACCTTACAAATGAAGAGTTCACTGCCTCAAGAAATCGATTCAAGGCACATGAATGTTCCACAAAGACGAAGACCACTACTTTCAAGTATGAAAATGCTACTGTGCCAACTACAATGGACTGGAGAAAGAAGGGAGCTGTAACTCCCATCAAGGACCAAGGCCAATGTGGAAGTTGTTGGGCATTCTCGGCAGTGGGAGCTATGGAAGGAATCACTCAACTTACAACTGGTAAACTAATCTCTTTGTCTGAGCAAGAGCTTGTAGACTGTGATGTCAAAGGTGTAGACCAAGGCTGTGCAGGTGGCCTTATGGACGATGCCTTTCAGTTCGTTATTCAAAATCATGGTATTAATACCGAGGCTAATTATCCCTACACTGCTGCGGATGGTACATGCAATGCCAAGAAGGAAGCAGGTCATGCAGCCACAATAACTGGCCACAAAGATGTGCCTGCAAACAGCGAAAGTGCCCTTCTTAAGGCCGTGGCTAATCAACCTATCTCTGTTGCTATTGATGCTAGTGGATCCGACTTCCAGTTCTATTCAAGTGGTGTTTTCACAGGAACATGTGGAACTGGTCTAGACCATGGTGTTACCGCTGTTGGTTATGGTGTGAGTGCTGATGGGACAAAGTACTGGTTGGTAAAGAACTCATGGGGTGCACAATGGGGTGAAGAAGGTTACATAAGAATGCAAAGAGATGTTGCTGCACCGGAAGGTCTGTGTGGTATTGCCATGGAAGCCTCTTACCCCACTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

342

Amino Acids

37.17

Weight (kDa)

5.28

Isoelectric Point (pI)

18.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	39 - 96	2.5e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	124 - 341	4.3e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0071761
rosa_multiflora	Rmu_sc0000694.1_g000024 Rmu_sc0002285.1_g000031 Rmu_sc0005500.1_g000002 Rmu_sc0013612.1_g000018
rosa_roxburghii	Rroxscaffold_4G00322960 Rroxscaffold_5G00335950 Rroxscaffold_5G00366950 Rroxscaffold_6G00388330 Rroxscaffold_6G00389350 Rroxscaffold_7G00165060 Rroxscaffold_7G00197390
rosa_rugosa	Rorug01G0183100 Rorug01G0183200 Rorug03G0077400 Rorug05G0261600 Rorug05G0261700
rosa_samantha	Rh2AG454500 Rh2BG458700 Rh2CG441600 Rh4CG103500 Rh4CG324600 Rh4DG275900 Rh4DG307600 Rh5CG264700 Rh6CG064500 Rh6CG148200 Rh6DG061500 Rh7CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	557
AasI	GACNNNNNNGTC	1 cut(s)	539
Acc36I	ACCTGC	2 cut(s)	557, 671
AccI	GTMKAC	2 cut(s)	531, 552
AciI	CCGC	3 cut(s)	175, 650, 864
AclWI	GGATC	2 cut(s)	786, 799
AcoI	YGGCCR	1 cut(s)	703
AfaI	GTAC	2 cut(s)	658, 902
AfiI	CCNNNNNNNGG	2 cut(s)	52, 745
AflII	CTTAAG	1 cut(s)	743
AflIII	ACRYGT	1 cut(s)	833
AgsI	TTSAA	6 cut(s)	181, 190, 310, 352, 605, 813
AjiI	CACGTC	1 cut(s)	143
AluBI	AGCT	5 cut(s)	104, 131, 404, 467, 526
AluI	AGCT	5 cut(s)	104, 131, 404, 467, 526
Alw21I	GWGCWC	1 cut(s)	931
Alw26I	GTCTC	1 cut(s)	92
Alw44I	GTGCAC	1 cut(s)	927
AlwI	GGATC	2 cut(s)	786, 799
AoxI	GGCC	5 cut(s)	36, 427, 571, 703, 747
ApaLI	GTGCAC	1 cut(s)	927
ApeKI	GCWGC	3 cut(s)	647, 689, 974
AseI	ATTAAT	1 cut(s)	618
AspS9I	GGNCC	2 cut(s)	172, 421
AsuHPI	GGTGA	1 cut(s)	950
AvaII	GGWCC	2 cut(s)	172, 421
BaeGI	GKGCMC	2 cut(s)	739, 931
BalI	TGGCCA	1 cut(s)	705
BamHI	GGATCC	1 cut(s)	791
BbsI	GAAGAC	2 cut(s)	57, 344
Bbv12I	GWGCWC	1 cut(s)	931
BbvI	GCAGC	3 cut(s)	634, 701, 961
BccI	CCATC	3 cut(s)	422, 647, 884
BceAI	ACGGC	1 cut(s)	734
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	786, 848
BfrI	CTTAAG	1 cut(s)	743
BfuAI	ACCTGC	2 cut(s)	557, 671
BisI	GCNGC	3 cut(s)	648, 690, 975
BlsI	GCNGC	3 cut(s)	649, 691, 976
BmcAI	AGTACT	1 cut(s)	902
Bme18I	GGWCC	2 cut(s)	172, 421
BmgBI	CACGTC	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	172, 421
BmiI	GGNNCC	1 cut(s)	793
BmsI	GCATC	3 cut(s)	85, 574, 772
BpiI	GAAGAC	2 cut(s)	57, 344
BpmI	CTGGAG	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	280
Bsa29I	ATCGAT	1 cut(s)	304
BsaJI	CCNNGG	6 cut(s)	424, 556, 624, 750, 853, 1002
BsaWI	WCCGGW	1 cut(s)	979
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 745
Bse1I	ACTGG	6 cut(s)	392, 499, 706, 802, 847, 908
Bse3DI	GCAATG	2 cut(s)	128, 670
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	6 cut(s)	424, 556, 624, 750, 853, 1002
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	2 cut(s)	52, 745
BseMI	GCAATG	2 cut(s)	128, 670
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	6 cut(s)	392, 499, 706, 802, 847, 908
BseSI	GKGCMC	2 cut(s)	739, 931
BseXI	GCAGC	3 cut(s)	634, 701, 961
BsgI	GTGCAG	2 cut(s)	585, 960
BshFI	GGCC	5 cut(s)	38, 429, 573, 705, 749
BshVI	ATCGAT	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	931
BsiSI	CCGG	1 cut(s)	980
BslFI	GGGAC	1 cut(s)	907
BslI	CCNNNNNNNGG	2 cut(s)	52, 745
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	907
BsmI	GAATGC	3 cut(s)	203, 449, 963
BsnI	GGCC	5 cut(s)	38, 429, 573, 705, 749
Bsp1286I	GDGCHC	2 cut(s)	739, 931
Bsp143I	GATC	1 cut(s)	791
Bsp19I	CCATGG	2 cut(s)	853, 1002
BspACI	CCGC	3 cut(s)	175, 650, 864
BspANI	GGCC	5 cut(s)	38, 429, 573, 705, 749
BspCNI	CTCAG	1 cut(s)	508
BspDI	ATCGAT	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	793
BspMI	ACCTGC	2 cut(s)	557, 671
BspPI	GGATC	2 cut(s)	786, 799
BspTI	CTTAAG	1 cut(s)	743
BsrDI	GCAATG	2 cut(s)	128, 670
BsrI	ACTGG	6 cut(s)	392, 499, 706, 802, 847, 908
BssECI	CCNNGG	6 cut(s)	424, 556, 624, 750, 853, 1002
BssMI	GATC	1 cut(s)	791
BssT1I	CCWWGG	4 cut(s)	424, 556, 853, 1002
Bst4CI	ACNGT	2 cut(s)	370, 536
Bst6I	CTCTTC	1 cut(s)	276
BstAFI	CTTAAG	1 cut(s)	743
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	720
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	3 cut(s)	750, 853, 1002
BstENI	CCTNNNNNAGG	1 cut(s)	743
BstF5I	GGATG	1 cut(s)	658
BstKTI	GATC	1 cut(s)	794
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	791
BstMWI	GCNNNNNNNGC	5 cut(s)	455, 464, 686, 782, 1007
BstNSI	RCATGY	2 cut(s)	663, 837
BstSLI	GKGCMC	2 cut(s)	739, 931
BstV1I	GCAGC	3 cut(s)	634, 701, 961
BstV2I	GAAGAC	2 cut(s)	57, 344
BstX2I	RGATCY	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	791
Bsu15I	ATCGAT	1 cut(s)	304
BsuRI	GGCC	5 cut(s)	38, 429, 573, 705, 749
BsuTUI	ATCGAT	1 cut(s)	304
BtgI	CCRYGG	3 cut(s)	750, 853, 1002
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	658
BtsI	GCAGTG	4 cut(s)	288, 465, 642, 1020
BtsIMutI	CAGTG	4 cut(s)	288, 465, 642, 1020
BveI	ACCTGC	2 cut(s)	557, 671
Cac8I	GCNNGC	1 cut(s)	720
Cfr13I	GGNCC	2 cut(s)	172, 421
ClaI	ATCGAT	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	657, 901
CviQI	GTAC	2 cut(s)	657, 901
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	1 cut(s)	793
DpnII	GATC	1 cut(s)	791
DrdI	GACNNNNNNGTC	1 cut(s)	539
DseDI	GACNNNNNNGTC	1 cut(s)	539
EaeI	YGGCCR	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	4 cut(s)	424, 556, 853, 1002
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	172, 421
EcoNI	CCTNNNNNAGG	1 cut(s)	743
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	4 cut(s)	424, 556, 853, 1002
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	4 cut(s)	424, 556, 853, 1002
FaqI	GGGAC	1 cut(s)	907
FblI	GTMKAC	2 cut(s)	531, 552
Fnu4HI	GCNGC	3 cut(s)	648, 690, 975
FokI	GGATG	1 cut(s)	665
Fsp4HI	GCNGC	3 cut(s)	648, 690, 975
FspBI	CTAG	2 cut(s)	786, 848
GluI	GCNGC	3 cut(s)	648, 690, 975
GsuI	CTGGAG	1 cut(s)	409
HaeIII	GGCC	5 cut(s)	38, 429, 573, 705, 749
HapII	CCGG	1 cut(s)	980
HinfI	GANTC	4 cut(s)	212, 250, 306, 477
HpaII	CCGG	1 cut(s)	980
HphI	GGTGA	1 cut(s)	950
Hpy166II	GTNNAC	6 cut(s)	9, 288, 500, 532, 553, 929
Hpy188I	TCNGA	4 cut(s)	70, 255, 517, 796
Hpy188III	TCNNGA	3 cut(s)	181, 297, 848
Hpy8I	GTNNAC	6 cut(s)	9, 288, 500, 532, 553, 929
HpyAV	CCTTC	7 cut(s)	160, 391, 467, 667, 749, 938, 977
HpyCH4III	ACNGT	2 cut(s)	370, 536
HpyCH4IV	ACGT	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	5 cut(s)	455, 464, 686, 782, 1007
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	791
LmnI	GCTCC	3 cut(s)	56, 401, 464
Lsp1109I	GCAGC	3 cut(s)	634, 701, 961
LweI	GCATC	3 cut(s)	85, 574, 772
MaeI	CTAG	2 cut(s)	786, 848
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	3 cut(s)	406, 859, 947
MalI	GATC	1 cut(s)	793
MboI	GATC	1 cut(s)	791
MboII	GAAGA	5 cut(s)	57, 207, 293, 349, 953
MflI	RGATCY	1 cut(s)	791
MhlI	GDGCHC	2 cut(s)	739, 931
MlsI	TGGCCA	1 cut(s)	705
MluCI	AATT	3 cut(s)	245, 260, 631
MluNI	TGGCCA	1 cut(s)	705
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	2 cut(s)	243, 819
MnlI	CCTC	8 cut(s)	56, 88, 105, 163, 193, 304, 619, 1021
Mox20I	TGGCCA	1 cut(s)	705
Mph1103I	ATGCAT	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	705
MseI	TTAA	3 cut(s)	41, 618, 744
MslI	CAYNNNNRTG	3 cut(s)	319, 711, 956
Msp20I	TGGCCA	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	866
MspCI	CTTAAG	1 cut(s)	743
MspI	CCGG	1 cut(s)	980
Mva1269I	GAATGC	3 cut(s)	203, 449, 963
MwoI	GCNNNNNNNGC	5 cut(s)	455, 464, 686, 782, 1007
NcoI	CCATGG	2 cut(s)	853, 1002
NdeII	GATC	1 cut(s)	791
NlaIV	GGNNCC	1 cut(s)	793
NmeAIII	GCCGAG	1 cut(s)	434
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	2 cut(s)	663, 837
PaqCI	CACCTGC	1 cut(s)	557
PciI	ACATGT	1 cut(s)	833
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PctI	GAATGC	3 cut(s)	203, 449, 963
PfeI	GAWTC	3 cut(s)	212, 306, 477
PkrI	GCNGC	3 cut(s)	649, 691, 976
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PscI	ACATGT	1 cut(s)	833
PshBI	ATTAAT	1 cut(s)	618
PspN4I	GGNNCC	1 cut(s)	793
PspPI	GGNCC	2 cut(s)	172, 421
PsuI	RGATCY	1 cut(s)	791
RsaI	GTAC	2 cut(s)	658, 902
RsaNI	GTAC	2 cut(s)	657, 901
RseI	CAYNNNNRTG	3 cut(s)	319, 711, 956
SaqAI	TTAA	3 cut(s)	41, 618, 744
SatI	GCNGC	3 cut(s)	648, 690, 975
Sau3AI	GATC	1 cut(s)	791
Sau96I	GGNCC	2 cut(s)	172, 421
ScaI	AGTACT	1 cut(s)	902
SchI	GAGTC	1 cut(s)	259
SduI	GDGCHC	2 cut(s)	739, 931
SfaNI	GCATC	3 cut(s)	85, 574, 772
SinI	GGWCC	2 cut(s)	172, 421
SmiMI	CAYNNNNRTG	3 cut(s)	319, 711, 956
SmlI	CTYRAG	2 cut(s)	295, 743
SmoI	CTYRAG	2 cut(s)	295, 743
Sse9I	AATT	3 cut(s)	245, 260, 631
SsiI	CCGC	3 cut(s)	175, 650, 864
SspMI	CTAG	2 cut(s)	786, 848
StyI	CCWWGG	4 cut(s)	424, 556, 853, 1002
TaaI	ACNGT	2 cut(s)	370, 536
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	304
TasI	AATT	3 cut(s)	245, 260, 631
TatI	WGTACW	1 cut(s)	900
TfiI	GAWTC	3 cut(s)	212, 306, 477
Tru1I	TTAA	3 cut(s)	41, 618, 744
Tru9I	TTAA	3 cut(s)	41, 618, 744
TscAI	CASTG	4 cut(s)	295, 465, 649, 1027
TseI	GCWGC	3 cut(s)	647, 689, 974
TspDTI	ATGAA	4 cut(s)	196, 294, 333, 372
TspRI	CASTG	4 cut(s)	295, 465, 649, 1027
Vha464I	CTTAAG	1 cut(s)	743
VneI	GTGCAC	1 cut(s)	927
VpaK11BI	GGWCC	2 cut(s)	172, 421
VspI	ATTAAT	1 cut(s)	618
XagI	CCTNNNNNAGG	1 cut(s)	743
XbaI	TCTAGA	1 cut(s)	847
XceI	RCATGY	2 cut(s)	663, 837
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XmiI	GTMKAC	2 cut(s)	531, 552
XspI	CTAG	2 cut(s)	786, 848
ZrmI	AGTACT	1 cut(s)	902
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.