Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005563

Physical Location & Seq

Genomic Coordinates Forward (+)

28362676 .. 28364630

Gene Structure 1955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG264700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGGGCTCTTCCAAGAGAGGTTTGGTGGGTAGATGGTGATAGACTGTCGCTTGTTCCAGCCTCAGAACAAAGAAAGCTTTTCAGTGGGGATTGCTACATTCTGCAATATACATATCTTGGCAACGAAAGGGATGAGAATCTATTTTATGCATGGCTTGGTGGTGGGAGTGTAATGGAAGATAGAACAGATACTATCTCTCATATGAATGCCATAGTTGAGTCAAGCAAGGGGAATCCTGTTGTGGCTCAAATTATGGAGAACAAGGAGCCATCTCAATTTTTTTCAATTTTACAGACATTAATTGTTTTTAAGGGAGGCAGGAGTCAACGATACAAGAAGCTTGTGGCAGAAAAGGGTATTGCAAATGAAACTTATGATGAAAGCAAGACAGCTCTTTTTCGTGTTCAAGGGACGAGTCCTAACAACATGCAGGCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

147

Amino Acids

16.69

Weight (kDa)

5.87

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7904	PF25480	15 - 104	2.2e-06	Domain of unknown function (DUF7904)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0071761
rosa_multiflora	Rmu_sc0000694.1_g000024 Rmu_sc0002285.1_g000031 Rmu_sc0005500.1_g000002 Rmu_sc0013612.1_g000018
rosa_roxburghii	Rroxscaffold_4G00322960 Rroxscaffold_5G00335950 Rroxscaffold_5G00366950 Rroxscaffold_6G00388330 Rroxscaffold_6G00389350 Rroxscaffold_7G00165060 Rroxscaffold_7G00197390
rosa_rugosa	Rorug01G0183100 Rorug01G0183200 Rorug03G0077400 Rorug05G0261600 Rorug05G0261700
rosa_samantha	Rh2AG454500 Rh2BG458700 Rh2CG441600 Rh4CG103500 Rh4CG324600 Rh4DG275900 Rh4DG307600 Rh5CG264700 Rh6CG064500 Rh6CG148200 Rh6DG061500 Rh7CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	288, 410
AluBI	AGCT	3 cut(s)	79, 343, 395
AluI	AGCT	3 cut(s)	79, 343, 395
AoxI	GGCC	1 cut(s)	435
AseI	ATTAAT	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	10
BccI	CCATC	2 cut(s)	29, 280
BmiI	GGNNCC	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	138
Bse8I	GATNNNNATC	1 cut(s)	138
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	437
BslFI	GGGAC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	437
BspCNI	CTCAG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	437
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	435
CviAII	CATG	2 cut(s)	153, 430
CviJI	RGCY	9 cut(s)	8, 62, 79, 157, 248, 271, 343, 395, 437
CviKI_1	RGCY	9 cut(s)	8, 62, 79, 157, 248, 271, 343, 395, 437
DdeI	CTNAG	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	2 cut(s)	156, 433
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	2 cut(s)	152, 429
FauNDI	CATATG	1 cut(s)	204
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	437
Hin1II	CATG	2 cut(s)	156, 433
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HindIII	AAGCTT	2 cut(s)	77, 341
HinfI	GANTC	5 cut(s)	139, 221, 235, 325, 418
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	106, 152, 365, 433
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	156, 433
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	4 cut(s)	72, 252, 307, 419
MboII	GAAGA	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	4 cut(s)	252, 278, 288, 303
MlyI	GAGTC	3 cut(s)	230, 334, 427
MnlI	CCTC	3 cut(s)	13, 73, 311
Mph1103I	ATGCAT	1 cut(s)	154
MseI	TTAA	2 cut(s)	302, 312
MslI	CAYNNNNRTG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	214
NdeI	CATATG	1 cut(s)	204
NlaIII	CATG	2 cut(s)	156, 433
NlaIV	GGNNCC	1 cut(s)	270
NsiI	ATGCAT	1 cut(s)	154
NspI	RCATGY	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	15
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	139, 235
PleI	GAGTC	3 cut(s)	229, 333, 426
PpsI	GAGTC	3 cut(s)	229, 333, 426
PshBI	ATTAAT	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	302, 312
SchI	GAGTC	3 cut(s)	230, 334, 427
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	4 cut(s)	24, 81, 345, 397
SmiMI	CAYNNNNRTG	1 cut(s)	207
Sse9I	AATT	4 cut(s)	252, 278, 288, 303
TaaI	ACNGT	1 cut(s)	48
TasI	AATT	4 cut(s)	252, 278, 288, 303
TfiI	GAWTC	2 cut(s)	139, 235
Tru1I	TTAA	2 cut(s)	302, 312
Tru9I	TTAA	2 cut(s)	302, 312
TscAI	CASTG	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	221, 384, 396
TspRI	CASTG	1 cut(s)	91
VspI	ATTAAT	1 cut(s)	302
XceI	RCATGY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.