Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005563

Physical Location & Seq

Genomic Coordinates Reverse (-)

41672285 .. 41675659

Gene Structure 3375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGACGGCGACCGAGAGGGAGGAGGTCGTACGACGTAGCACCGCCATCACCGATTACCGCAAGAGTTTCGGGCAAGGGTTTTCGTCTGTCGCAAGAAAGTGGACAAAGAAAAACCAACAAAGCAAGCGCTCGAGTTGTTTTGGATATGACTATCCGACTATCATGAGGGCTCTTCCAAGAGAGGAAGATAGAACAGATACTATCTCTCATATGAATGCCATAGTTGAGTCAAGCAAGGGGAATCCTGTTGTGGGAGGCAGGAGTCAACAATACAAGAAGCTTGTGGCAAAAAAGGGTATTGCAGATGAAACTTATGATGAAAGCAAGACAACTCTTTTTCGTTTTGAACCAACATGGCAAGCCATATCGTTGAGGGAAGGGAGTGAATCGATGTTTTCTAGAGTGCACTTGGTGAAAAGGCAGAGTGATTTCAAGGATGATTTAAATATTGAAGATGTGTTAGTCCTCGACTGCCACATTGAGATATATGTCCGGATTGGAAGCCACTCAAATATTAAGTCAAAGCAACAAGCCCTTACTCTTGGCCTGGATGCTATTGGTTATATATTACCTGGTTTGAAGGAAGGGCGTGAGAAAATGTCAAAGAGGATTCCCGATTCTGCTATAATATTCATGAACGATAAAGAGGTATATTGCTACCGAAGTGTCAAGCTCTTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

227

Amino Acids

26.04

Weight (kDa)

9.31

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0071761
rosa_multiflora	Rmu_sc0000694.1_g000024 Rmu_sc0002285.1_g000031 Rmu_sc0005500.1_g000002 Rmu_sc0013612.1_g000018
rosa_roxburghii	Rroxscaffold_4G00322960 Rroxscaffold_5G00335950 Rroxscaffold_5G00366950 Rroxscaffold_6G00388330 Rroxscaffold_6G00389350 Rroxscaffold_7G00165060 Rroxscaffold_7G00197390
rosa_rugosa	Rorug01G0183100 Rorug01G0183200 Rorug03G0077400 Rorug05G0261600 Rorug05G0261700
rosa_samantha	Rh2AG454500 Rh2BG458700 Rh2CG441600 Rh4CG103500 Rh4CG324600 Rh4DG275900 Rh4DG307600 Rh5CG264700 Rh6CG064500 Rh6CG148200 Rh6DG061500 Rh7CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	492
AciI	CCGC	2 cut(s)	42, 58
AdeI	CACNNNGTG	1 cut(s)	412
AfaI	GTAC	1 cut(s)	30
AfeI	AGCGCT	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	4 cut(s)	347, 433, 452, 580
AjnI	CCWGG	2 cut(s)	546, 571
AluBI	AGCT	2 cut(s)	280, 673
AluI	AGCT	2 cut(s)	280, 673
Alw21I	GWGCWC	1 cut(s)	408
Alw44I	GTGCAC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	130
Aor13HI	TCCGGA	1 cut(s)	492
Aor51HI	AGCGCT	1 cut(s)	128
AoxI	GGCC	1 cut(s)	544
ApaLI	GTGCAC	1 cut(s)	404
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AspLEI	GCGC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	40, 424
AvaI	CYCGRG	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	408
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	21
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	2 cut(s)	548, 573
BfaI	CTAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	130
Bme1390I	CCNGG	2 cut(s)	548, 573
BmeT110I	CYCGRG	1 cut(s)	130
BmrFI	CCNGG	2 cut(s)	548, 573
BmsI	GCATC	1 cut(s)	541
Bsa29I	ATCGAT	1 cut(s)	389
BsaWI	WCCGGW	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
BseAI	TCCGGA	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	548, 573
BseCI	ATCGAT	1 cut(s)	389
BseGI	GGATG	2 cut(s)	442, 556
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	408
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	546
BshVI	ATCGAT	1 cut(s)	389
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	493
BsiWI	CGTACG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	546
BsoBI	CYCGRG	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	172, 408
Bsp13I	TCCGGA	1 cut(s)	492
BspACI	CCGC	2 cut(s)	42, 58
BspANI	GGCC	1 cut(s)	546
BspDI	ATCGAT	1 cut(s)	389
BspEI	TCCGGA	1 cut(s)	492
BspHI	TCATGA	2 cut(s)	162, 633
BspQI	GCTCTTC	2 cut(s)	177, 680
Bst2UI	CCWGG	2 cut(s)	548, 573
Bst6I	CTCTTC	2 cut(s)	177, 680
BstC8I	GCNNGC	2 cut(s)	125, 360
BstF5I	GGATG	2 cut(s)	442, 556
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstMCI	CGRYCG	1 cut(s)	12
BstNI	CCWGG	2 cut(s)	548, 573
BstSCI	CCNGG	2 cut(s)	546, 571
BstSLI	GKGCMC	1 cut(s)	408
Bsu15I	ATCGAT	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	546
BsuTUI	ATCGAT	1 cut(s)	389
BtsCI	GGATG	2 cut(s)	442, 556
Cac8I	GCNNGC	2 cut(s)	125, 360
CciI	TCATGA	2 cut(s)	162, 633
CfoI	GCGC	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	389
CsiI	ACCWGGT	1 cut(s)	571
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	3 cut(s)	163, 354, 634
CviJI	RGCY	7 cut(s)	170, 280, 362, 504, 533, 546, 673
CviKI_1	RGCY	7 cut(s)	170, 280, 362, 504, 533, 546, 673
CviQI	GTAC	1 cut(s)	29
DraI	TTTAAA	1 cut(s)	444
DraIII	CACNNNGTG	1 cut(s)	412
Eam1104I	CTCTTC	2 cut(s)	177, 680
EarI	CTCTTC	2 cut(s)	177, 680
Eco24I	GRGCYC	1 cut(s)	172
Eco47III	AGCGCT	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	546, 571
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	3 cut(s)	166, 357, 637
FatI	CATG	3 cut(s)	162, 353, 633
FauNDI	CATATG	2 cut(s)	210, 680
FokI	GGATG	2 cut(s)	449, 563
FriOI	GRGCYC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	1 cut(s)	493
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	166, 357, 637
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	6 cut(s)	227, 241, 262, 386, 610, 617
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	2 cut(s)	40, 424
Hpy166II	GTNNAC	3 cut(s)	102, 266, 406
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	5 cut(s)	163, 399, 493, 614, 634
Hpy8I	GTNNAC	3 cut(s)	102, 266, 406
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	3 cut(s)	371, 574, 578
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	2 cut(s)	302, 406
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	3 cut(s)	166, 357, 637
HspAI	GCGC	1 cut(s)	127
Kpn2I	TCCGGA	1 cut(s)	492
LguI	GCTCTTC	2 cut(s)	177, 680
LpnPI	CCDG	7 cut(s)	244, 258, 506, 533, 558, 560, 585
LweI	GCATC	1 cut(s)	541
MabI	ACCWGGT	1 cut(s)	571
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	34
MboII	GAAGA	4 cut(s)	164, 197, 464, 667
MhlI	GDGCHC	2 cut(s)	172, 408
MlyI	GAGTC	2 cut(s)	236, 271
MmeI	TCCRAC	1 cut(s)	179
MroI	TCCGGA	1 cut(s)	492
MseI	TTAA	2 cut(s)	443, 516
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	1 cut(s)	493
MspR9I	CCNGG	2 cut(s)	548, 573
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	2 cut(s)	548, 573
NdeI	CATATG	2 cut(s)	210, 680
NlaIII	CATG	3 cut(s)	166, 357, 637
PaeR7I	CTCGAG	1 cut(s)	130
PagI	TCATGA	2 cut(s)	162, 633
PciSI	GCTCTTC	2 cut(s)	177, 680
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	4 cut(s)	241, 386, 610, 617
Pfl23II	CGTACG	1 cut(s)	28
PleI	GAGTC	2 cut(s)	235, 270
PpsI	GAGTC	2 cut(s)	235, 270
Psp6I	CCWGG	2 cut(s)	546, 571
PspGI	CCWGG	2 cut(s)	546, 571
PspLI	CGTACG	1 cut(s)	28
PspXI	VCTCGAGB	1 cut(s)	130
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	213
SapI	GCTCTTC	2 cut(s)	177, 680
SaqAI	TTAA	2 cut(s)	443, 516
SchI	GAGTC	2 cut(s)	236, 271
ScrFI	CCNGG	2 cut(s)	548, 573
SduI	GDGCHC	2 cut(s)	172, 408
SetI	ASST	6 cut(s)	27, 37, 282, 574, 651, 675
SexAI	ACCWGGT	1 cut(s)	571
SfaNI	GCATC	1 cut(s)	541
Sfr274I	CTCGAG	1 cut(s)	130
SlaI	CTCGAG	1 cut(s)	130
SmiI	ATTTAAAT	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SsiI	CCGC	2 cut(s)	42, 58
SspI	AATATT	3 cut(s)	448, 514, 630
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	546, 571
SwaI	ATTTAAAT	1 cut(s)	444
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	3 cut(s)	131, 389, 468
TaqII	GACCGA	1 cut(s)	26
TfiI	GAWTC	4 cut(s)	241, 386, 610, 617
Tru1I	TTAA	2 cut(s)	443, 516
Tru9I	TTAA	2 cut(s)	443, 516
TspDTI	ATGAA	6 cut(s)	227, 321, 333, 622, 650, 667
VneI	GTGCAC	1 cut(s)	404
XbaI	TCTAGA	1 cut(s)	398
XhoI	CTCGAG	1 cut(s)	130
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.