Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013612.1

Orthogroup ID

OG0005563

Physical Location & Seq

Genomic Coordinates Forward (+)

62814 .. 64215

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013612.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgacagcagccgagagggaggaggtcgtacaacgtagcaccgccatcaccgattaccgcaagagtgggtatcttggctgtcgcagtaaagtggacaaagaaaaaccaacaacaggcgctcgagtttggtgggtagatggtgatagactgtcccttgttccagcctcagaacaaagaaagcttttcagtggggattgctacattctgcaatatacatatcttggcaacgaaagggatgagaatctattttatgcatggcttggtggtgggagtgtaatggaagatagaacagatactatctctcatatgaatgccatagttgagtcaagcaaggggaatcctgttgtgggaggcaggagtcaacgatacaagaagcttgtggcagaaaagggtattgcagatgaaacttatgatgaaagcaagacagctctttttcgtgttcaagggacgagtcctaacaacatgcaagccatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

158

Amino Acids

17.71

Weight (kDa)

6.61

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005563)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0071761
rosa_multiflora	Rmu_sc0000694.1_g000024 Rmu_sc0002285.1_g000031 Rmu_sc0005500.1_g000002 Rmu_sc0013612.1_g000018
rosa_roxburghii	Rroxscaffold_4G00322960 Rroxscaffold_5G00335950 Rroxscaffold_5G00366950 Rroxscaffold_6G00388330 Rroxscaffold_6G00389350 Rroxscaffold_7G00165060 Rroxscaffold_7G00197390
rosa_rugosa	Rorug01G0183100 Rorug01G0183200 Rorug03G0077400 Rorug05G0261600 Rorug05G0261700
rosa_samantha	Rh2AG454500 Rh2BG458700 Rh2CG441600 Rh4CG103500 Rh4CG324600 Rh4DG275900 Rh4DG307600 Rh5CG264700 Rh6CG064500 Rh6CG148200 Rh6DG061500 Rh7CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	42, 58
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	113, 347
AgsI	TTSAA	1 cut(s)	443
AluBI	AGCT	3 cut(s)	181, 376, 428
AluI	AGCT	3 cut(s)	181, 376, 428
Ama87I	CYCGRG	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	40, 152
AvaI	CYCGRG	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	2 cut(s)	53, 131
BfoI	RGCGCY	1 cut(s)	120
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 347
Bse8I	GATNNNNATC	1 cut(s)	240
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	113, 347
BseMII	CTCAG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	120
BslFI	GGGAC	2 cut(s)	136, 460
BslI	CCNNNNNNNGG	2 cut(s)	113, 347
BsmFI	GGGAC	2 cut(s)	136, 460
BsmI	GAATGC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	120
BspACI	CCGC	2 cut(s)	42, 58
BspCNI	CTCAG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	466
BstV1I	GCAGC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	468
CfoI	GCGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	2 cut(s)	255, 463
CviJI	RGCY	8 cut(s)	11, 78, 164, 181, 259, 376, 428, 470
CviKI_1	RGCY	8 cut(s)	11, 78, 164, 181, 259, 376, 428, 470
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	256
FaeI	CATG	2 cut(s)	258, 466
FaiI	YATR	9 cut(s)	213, 217, 252, 256, 306, 308, 317, 411, 464
FaqI	GGGAC	2 cut(s)	136, 460
FatI	CATG	2 cut(s)	254, 462
FauNDI	CATATG	1 cut(s)	306
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	9
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	120
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	258, 466
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	362
HindII	GTYRAC	1 cut(s)	362
HindIII	AAGCTT	2 cut(s)	179, 374
HinfI	GANTC	5 cut(s)	241, 323, 337, 358, 451
HphI	GGTGA	2 cut(s)	40, 152
Hpy166II	GTNNAC	2 cut(s)	94, 362
Hpy188I	TCNGA	1 cut(s)	169
Hpy8I	GTNNAC	2 cut(s)	94, 362
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	208, 254, 398, 466
HpyF3I	CTNAG	1 cut(s)	166
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	258, 466
HspAI	GCGC	1 cut(s)	117
LpnPI	CCDG	4 cut(s)	99, 174, 340, 354
Lsp1109I	GCAGC	1 cut(s)	20
MaeII	ACGT	1 cut(s)	34
MboII	GAAGA	1 cut(s)	293
MlyI	GAGTC	3 cut(s)	332, 367, 460
MnlI	CCTC	5 cut(s)	9, 13, 16, 175, 344
Mph1103I	ATGCAT	1 cut(s)	256
MslI	CAYNNNNRTG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	316
NdeI	CATATG	1 cut(s)	306
NlaIII	CATG	2 cut(s)	258, 466
NmeAIII	GCCGAG	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	256
NspI	RCATGY	1 cut(s)	466
PaeR7I	CTCGAG	1 cut(s)	120
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	241, 337
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	3 cut(s)	331, 366, 459
PpsI	GAGTC	3 cut(s)	331, 366, 459
PspXI	VCTCGAGB	1 cut(s)	120
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	309
SatI	GCNGC	1 cut(s)	9
SchI	GAGTC	3 cut(s)	332, 367, 460
SetI	ASST	5 cut(s)	27, 37, 183, 378, 430
Sfr274I	CTCGAG	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
SsiI	CCGC	2 cut(s)	42, 58
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	241, 337
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	3 cut(s)	323, 417, 429
TspRI	CASTG	1 cut(s)	193
XceI	RCATGY	1 cut(s)	466
XhoI	CTCGAG	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.