RchiOBHm_Chr4g0398051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002354
Physical Location & Seq
Reverse (-)
14413226 .. 14413922
697 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 549 bp
ATGCCTATTGAATCTCCGGTCGAGTCTCCGACTACGTCCTCACCGGGTTGCACGGTTGGTACAGGGTTGCAATCTTCGGATATTTCTGCAAACAAACATGCTAATCCAGCTCTTGTGGACTTGCTCAAAGTCTCTTTCACACAATCAAATTTCTCCATGGCATTCCCCTATATTTCTGCATCAGAGAATGATGCTATGGAAAGTTCTTTAGTGTCAGGGATGTCAGAGATTTGTGGGCAGAATTTTGGATTCAGTAATGTTTGTTTCTCGGAGTCATGCTCTATGTGGTGTGATGATGTTCAAAAGCTTTCAGACCTGCATTCGGTCCATGATTATTTTCTTTTGAGGATGGAGAAGAGACCAAATGGGGAAGCAGATTTGGTGGTGTTCTACCACAAAGGATCTGATTCTAAAAAGGAACTAGAACACCCACATTCAGAGAGTAAAATTTTCTCTGAGATGGTTAGTTTTGTGGATCAGTCTGGGGCAAAATATGCAGTTCTATATGTCTCAGACCCCATTAAATCAATCCAATATCCTTCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.98

Weight (kDa)

4.9

Isoelectric Point (pI)

58.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 324
AclWI GGATC 2 cut(s) 409, 483
AcsI RAATTY 3 cut(s) 148, 241, 447
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 2 cut(s) 11, 302
AluBI AGCT 2 cut(s) 110, 307
AluI AGCT 2 cut(s) 110, 307
Alw26I GTCTC 4 cut(s) 30, 136, 352, 514
AlwI GGATC 2 cut(s) 409, 483
ApoI RAATTY 3 cut(s) 148, 241, 447
AspS9I GGNCC 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 33
AvaII GGWCC 1 cut(s) 325
BccI CCATC 2 cut(s) 343, 454
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 4 cut(s) 30, 136, 352, 514
BfaI CTAG 1 cut(s) 422
BfuAI ACCTGC 1 cut(s) 324
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 181, 188
BplI GAGNNNNNCTC 2 cut(s) 263, 295
BpuMI CCSGG 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 225, 354
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 447, 525
Bsh1285I CGRYCG 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 21
BsiSI CCGG 2 cut(s) 17, 44
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 4 cut(s) 30, 136, 352, 514
BsmI GAATGC 2 cut(s) 161, 319
Bso31I GGTCTC 1 cut(s) 352
Bsp143I GATC 2 cut(s) 401, 475
Bsp19I CCATGG 1 cut(s) 156
BspCNI CTCAG 2 cut(s) 448, 524
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 2 cut(s) 409, 483
BspTNI GGTCTC 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 401, 475
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 350
BstAPI GCANNNNNTGC 1 cut(s) 494
BstDEI CTNAG 2 cut(s) 456, 511
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 2 cut(s) 225, 354
BstKTI GATC 2 cut(s) 404, 478
BstMAI GTCTC 4 cut(s) 30, 136, 352, 514
BstMBI GATC 2 cut(s) 401, 475
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 107, 494
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 2 cut(s) 225, 354
BveI ACCTGC 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 60
CviAII CATG 4 cut(s) 98, 157, 276, 329
CviJI RGCY 2 cut(s) 110, 307
CviKI_1 RGCY 2 cut(s) 110, 307
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 2 cut(s) 456, 511
DpnI GATC 2 cut(s) 403, 477
DpnII GATC 2 cut(s) 401, 475
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 4 cut(s) 101, 160, 279, 332
FatI CATG 4 cut(s) 97, 156, 275, 328
FokI GGATG 2 cut(s) 232, 361
FspBI CTAG 1 cut(s) 422
HapII CCGG 2 cut(s) 17, 44
Hin1II CATG 4 cut(s) 101, 160, 279, 332
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 5 cut(s) 11, 23, 249, 272, 407
HpaII CCGG 2 cut(s) 17, 44
HphI GGTGA 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 549
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 6 cut(s) 51, 70, 89, 179, 319, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 494
HpyF3I CTNAG 2 cut(s) 456, 511
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 4 cut(s) 101, 160, 279, 332
Kzo9I GATC 2 cut(s) 401, 475
LpnPI CCDG 7 cut(s) 30, 48, 57, 120, 201, 329, 468
LweI GCATC 2 cut(s) 181, 188
MaeI CTAG 1 cut(s) 422
MaeII ACGT 1 cut(s) 35
MalI GATC 2 cut(s) 403, 477
MboI GATC 2 cut(s) 401, 475
MboII GAAGA 2 cut(s) 66, 367
MflI RGATCY 1 cut(s) 401
MluCI AATT 3 cut(s) 148, 241, 447
MlyI GAGTC 2 cut(s) 32, 281
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 2 cut(s) 49, 339
MseI TTAA 1 cut(s) 522
MspI CCGG 2 cut(s) 17, 44
MspR9I CCNGG 1 cut(s) 45
Mva1269I GAATGC 2 cut(s) 161, 319
MwoI GCNNNNNNNGC 2 cut(s) 107, 494
NciI CCSGG 1 cut(s) 45
NcoI CCATGG 1 cut(s) 156
NdeII GATC 2 cut(s) 401, 475
NlaIII CATG 4 cut(s) 101, 160, 279, 332
NspI RCATGY 1 cut(s) 101
PctI GAATGC 2 cut(s) 161, 319
PfeI GAWTC 3 cut(s) 11, 249, 407
PflFI GACNNNGTC 1 cut(s) 34
PleI GAGTC 2 cut(s) 31, 280
PpsI GAGTC 2 cut(s) 31, 280
PspPI GGNCC 1 cut(s) 325
PsuI RGATCY 1 cut(s) 401
PsyI GACNNNGTC 1 cut(s) 34
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 522
Sau3AI GATC 2 cut(s) 401, 475
Sau96I GGNCC 1 cut(s) 325
SchI GAGTC 2 cut(s) 32, 281
ScrFI CCNGG 1 cut(s) 45
SetI ASST 4 cut(s) 38, 112, 309, 318
SfaNI GCATC 2 cut(s) 181, 188
SinI GGWCC 1 cut(s) 325
Sse9I AATT 3 cut(s) 148, 241, 447
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 21
TaqII GACCGA 1 cut(s) 313
TasI AATT 3 cut(s) 148, 241, 447
TfiI GAWTC 3 cut(s) 11, 249, 407
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
Tth111I GACNNNGTC 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 3 cut(s) 148, 241, 447
XceI RCATGY 1 cut(s) 101
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.