Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004565

Physical Location & Seq

Genomic Coordinates Forward (+)

30119035 .. 30122893

Gene Structure 3859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAATGGTGCATATTGTTCGAGCAGGCCCATGCGTATAGGTGTTGCAACGCCAAAAAATCATCTGGATATCAACAACAGTACTCTTCACAAGGATTGGTATTGGCTGGAGGTGGTGGACATGCAAGTGGTGCCATTGCCCAAGGTTCTCAGTCTGATGGCGAGCCCAATAAGACAACTATATTTGTTGGAGGGCTTGATTCTGATGTCAATGAGGAAGACCTCACGCAGCCATGTTCTCAATTTGGTGAAGTTGTCTCTGAAAATACCGGTTGGAAAAGCATGCGGTTTTGTTCAGTTTGCTAATAGGAAGGATGCTGAGAATGCAATGAATATGCTGAATGCAACTGTTATTGGAAAGCAAACAGTTCGTCTGTCTTGGGGTCGCAGTCAAGGCAACAAGCAGTGGAGATCGGACTCAAGTAACCAGTGGAACAATGGAGGACATTATGGAGGGCAGGGGTATGGTGGGTACACAAATGCTGCGCCACAGAATCCAGATCTGAGTATGCATGCTGCAGCTGCGGTTAACAGGTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

180

Amino Acids

19.91

Weight (kDa)

10.01

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49600 AT1G49600 AT1G49600 AT3G19130
fragaria_vesca	FvH4_2g06660 FvH4_2g06660 FvH4_2g06660
malus_domestica	MD05G1076000.v1.1 MD10G1090700.v1.1
prunus_persica	Prupe.8G119500_v2.0.a1 Prupe.8G119500_v2.0.a1
pyrus_communis	pycom05g06950 pycom10g07420
rosa_chinensis	RchiOBHm_Chr4g0407821 RchiOBHm_Chr6g0258701
rosa_laevigata	RLG00000014588
rosa_multiflora	Rmu_ssc0000014.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352380 Rroxscaffold_7G00206030
rosa_rugosa	Rorug04G0081300 Rorug05G0582900 Rorug05G0583000 Rorug05G0583100
rosa_samantha	Rh4AG146600 Rh4BG144100 Rh4CG153100 Rh4DG140600 Rh6BG091100 Rh6DG082700
rosa_wichuraiana	Rw0G022700 Rw6G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AciI	CCGC	2 cut(s)	285, 524
AfaI	GTAC	2 cut(s)	82, 473
AgeI	ACCGGT	1 cut(s)	268
AluBI	AGCT	1 cut(s)	521
AluI	AGCT	1 cut(s)	521
Alw26I	GTCTC	1 cut(s)	261
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	5 cut(s)	228, 482, 515, 518, 521
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AsiGI	ACCGGT	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	167
BbsI	GAAGAC	2 cut(s)	224, 528
BbvI	GCAGC	5 cut(s)	240, 469, 502, 508, 530
BccI	CCATC	1 cut(s)	151
BcgI	CGANNNNNNTGC	3 cut(s)	34, 350, 384
BcoDI	GTCTC	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	516
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	5 cut(s)	229, 483, 516, 519, 522
BlsI	GCNGC	5 cut(s)	230, 484, 517, 520, 523
BmcAI	AGTACT	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	132
BmsI	GCATC	1 cut(s)	304
BpiI	GAAGAC	2 cut(s)	224, 528
BpmI	CTGGAG	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	268
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	2 cut(s)	134, 333
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	319
BseMI	GCAATG	2 cut(s)	134, 333
BseMII	CTCAG	3 cut(s)	163, 309, 494
BseNI	ACTGG	1 cut(s)	427
BseXI	GCAGC	5 cut(s)	240, 469, 502, 508, 530
BshFI	GGCC	1 cut(s)	28
BshNI	GGYRCC	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	261
BsmI	GAATGC	2 cut(s)	328, 346
BsnI	GGCC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	410, 499
BspACI	CCGC	2 cut(s)	285, 524
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	3 cut(s)	162, 310, 495
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	130
BsrDI	GCAATG	2 cut(s)	134, 333
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	2 cut(s)	410, 499
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	80, 349, 367
Bst6I	CTCTTC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstC8I	GCNNGC	4 cut(s)	26, 163, 283, 513
BstDEI	CTNAG	3 cut(s)	149, 318, 503
BstF5I	GGATG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	2 cut(s)	413, 502
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	2 cut(s)	410, 499
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 323, 393, 521
BstNSI	RCATGY	3 cut(s)	124, 285, 515
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	5 cut(s)	240, 469, 502, 508, 530
BstV2I	GAAGAC	2 cut(s)	224, 528
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	410, 434
Cac8I	GCNNGC	4 cut(s)	26, 163, 283, 513
CfoI	GCGC	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	81, 472
CspAI	ACCGGT	1 cut(s)	268
CviAII	CATG	5 cut(s)	31, 121, 233, 282, 512
CviJI	RGCY	6 cut(s)	28, 106, 165, 195, 231, 521
CviKI_1	RGCY	6 cut(s)	28, 106, 165, 195, 231, 521
CviQI	GTAC	2 cut(s)	81, 472
DdeI	CTNAG	3 cut(s)	149, 318, 503
DpnI	GATC	2 cut(s)	412, 501
DpnII	GATC	2 cut(s)	410, 499
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	70
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	141
EcoT22I	ATGCAT	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	5 cut(s)	34, 124, 236, 285, 515
FatI	CATG	5 cut(s)	30, 120, 232, 281, 511
Fnu4HI	GCNGC	5 cut(s)	229, 483, 516, 519, 522
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	5 cut(s)	229, 483, 516, 519, 522
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	5 cut(s)	229, 483, 516, 519, 522
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	5 cut(s)	34, 124, 236, 285, 515
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	3 cut(s)	199, 416, 493
HpaI	GTTAAC	1 cut(s)	529
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	3 cut(s)	118, 474, 529
Hpy188I	TCNGA	5 cut(s)	156, 204, 261, 415, 504
Hpy188III	TCNNGA	2 cut(s)	65, 497
Hpy8I	GTNNAC	3 cut(s)	118, 474, 529
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	3 cut(s)	80, 349, 367
HpyCH4V	TGCA	7 cut(s)	11, 47, 124, 326, 344, 511, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 323, 393, 521
HpyF3I	CTNAG	3 cut(s)	149, 318, 503
Hsp92II	CATG	5 cut(s)	34, 124, 236, 285, 515
HspAI	GCGC	1 cut(s)	485
KspAI	GTTAAC	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	410, 499
LpnPI	CCDG	8 cut(s)	10, 50, 92, 282, 440, 443, 510, 517
Lsp1109I	GCAGC	5 cut(s)	240, 469, 502, 508, 530
LweI	GCATC	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	2 cut(s)	412, 501
MboI	GATC	2 cut(s)	410, 499
MboII	GAAGA	3 cut(s)	77, 229, 528
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	2 cut(s)	168, 253
MnlI	CCTC	6 cut(s)	103, 184, 207, 232, 434, 446
Mph1103I	ATGCAT	1 cut(s)	513
MseI	TTAA	2 cut(s)	528, 541
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	269
Mva1269I	GAATGC	2 cut(s)	328, 346
MwoI	GCNNNNNNNGC	4 cut(s)	130, 323, 393, 521
NdeII	GATC	2 cut(s)	410, 499
NlaIII	CATG	5 cut(s)	34, 124, 236, 285, 515
NlaIV	GGNNCC	1 cut(s)	132
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	3 cut(s)	124, 285, 515
PaeI	GCATGC	2 cut(s)	285, 515
PctI	GAATGC	2 cut(s)	328, 346
PfeI	GAWTC	2 cut(s)	199, 493
PinAI	ACCGGT	1 cut(s)	268
PkrI	GCNGC	5 cut(s)	230, 484, 517, 520, 523
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	2 cut(s)	82, 473
RsaNI	GTAC	2 cut(s)	81, 472
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	528, 541
SatI	GCNGC	5 cut(s)	229, 483, 516, 519, 522
Sau3AI	GATC	2 cut(s)	410, 499
Sau96I	GGNCC	1 cut(s)	27
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	6 cut(s)	43, 114, 147, 224, 523, 536
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	516
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
SphI	GCATGC	2 cut(s)	285, 515
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	2 cut(s)	285, 524
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	3 cut(s)	80, 349, 367
TaqI	TCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	241
TatI	WGTACW	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	199, 493
Tru1I	TTAA	2 cut(s)	528, 541
Tru9I	TTAA	2 cut(s)	528, 541
TscAI	CASTG	2 cut(s)	410, 434
TseI	GCWGC	5 cut(s)	228, 482, 515, 518, 521
TspDTI	ATGAA	2 cut(s)	17, 344
TspRI	CASTG	2 cut(s)	410, 434
XceI	RCATGY	3 cut(s)	124, 285, 515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	82
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.