DNA topoisomerase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0420261 RchiOBHm_Chr4g0420281 |
| rosa_laevigata | RLG00000008411 RLG00000009409 |
| rosa_multiflora | Rmu_sc0001009.1_g000027 Rmu_sc0003539.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00362910 Rroxscaffold_6G00399630 |
| rosa_rugosa | Rorug04G0161700 |
| rosa_samantha | Rh1AG127300 Rh1CG121200 Rh2AG194800 Rh2BG274300 Rh2BG558800 Rh2CG315200 Rh2CG528700 Rh2DG202300 Rh4AG223700 Rh4BG226500 Rh4CG233600 Rh4CG237100 Rh4CG237400 Rh4CG237900 Rh5AG169700 Rh7CG456900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 199 |
| AcuI | CTGAAG | 2 cut(s) | 101, 320 |
| AfaI | GTAC | 1 cut(s) | 30 |
| AgsI | TTSAA | 2 cut(s) | 70, 254 |
| AluBI | AGCT | 2 cut(s) | 79, 334 |
| AluI | AGCT | 2 cut(s) | 79, 334 |
| Alw21I | GWGCWC | 1 cut(s) | 301 |
| Alw26I | GTCTC | 1 cut(s) | 345 |
| Alw44I | GTGCAC | 1 cut(s) | 297 |
| ApaLI | GTGCAC | 1 cut(s) | 297 |
| ApeKI | GCWGC | 1 cut(s) | 18 |
| AsuHPI | GGTGA | 1 cut(s) | 341 |
| BaeGI | GKGCMC | 1 cut(s) | 301 |
| BanII | GRGCYC | 1 cut(s) | 97 |
| Bbv12I | GWGCWC | 1 cut(s) | 301 |
| BbvI | GCAGC | 1 cut(s) | 5 |
| BccI | CCATC | 1 cut(s) | 98 |
| BceAI | ACGGC | 1 cut(s) | 35 |
| BcoDI | GTCTC | 1 cut(s) | 345 |
| BfaI | CTAG | 1 cut(s) | 309 |
| BfmI | CTRYAG | 1 cut(s) | 406 |
| BisI | GCNGC | 2 cut(s) | 19, 199 |
| BlsI | GCNGC | 2 cut(s) | 20, 200 |
| BsaAI | YACGTR | 1 cut(s) | 28 |
| BseGI | GGATG | 1 cut(s) | 174 |
| BseSI | GKGCMC | 1 cut(s) | 301 |
| BseXI | GCAGC | 1 cut(s) | 5 |
| BsiHKAI | GWGCWC | 1 cut(s) | 301 |
| BsmAI | GTCTC | 1 cut(s) | 345 |
| Bsp1286I | GDGCHC | 2 cut(s) | 97, 301 |
| Bsp143I | GATC | 1 cut(s) | 379 |
| BspACI | CCGC | 1 cut(s) | 199 |
| BspQI | GCTCTTC | 1 cut(s) | 279 |
| BssMI | GATC | 1 cut(s) | 379 |
| Bst6I | CTCTTC | 1 cut(s) | 279 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 15 |
| BstBAI | YACGTR | 1 cut(s) | 28 |
| BstDEI | CTNAG | 1 cut(s) | 154 |
| BstF5I | GGATG | 1 cut(s) | 174 |
| BstKTI | GATC | 1 cut(s) | 382 |
| BstMAI | GTCTC | 1 cut(s) | 345 |
| BstMBI | GATC | 1 cut(s) | 379 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 15 |
| BstSFI | CTRYAG | 1 cut(s) | 406 |
| BstSLI | GKGCMC | 1 cut(s) | 301 |
| BstV1I | GCAGC | 1 cut(s) | 5 |
| BtsCI | GGATG | 1 cut(s) | 174 |
| Csp6I | GTAC | 1 cut(s) | 29 |
| CviJI | RGCY | 6 cut(s) | 50, 79, 95, 289, 334, 389 |
| CviKI_1 | RGCY | 6 cut(s) | 50, 79, 95, 289, 334, 389 |
| CviQI | GTAC | 1 cut(s) | 29 |
| DdeI | CTNAG | 1 cut(s) | 154 |
| DpnI | GATC | 1 cut(s) | 381 |
| DpnII | GATC | 1 cut(s) | 379 |
| Eam1104I | CTCTTC | 1 cut(s) | 279 |
| EarI | CTCTTC | 1 cut(s) | 279 |
| Eco24I | GRGCYC | 1 cut(s) | 97 |
| Eco32I | GATATC | 1 cut(s) | 280 |
| Eco57I | CTGAAG | 2 cut(s) | 101, 320 |
| EcoRV | GATATC | 1 cut(s) | 280 |
| EcoT38I | GRGCYC | 1 cut(s) | 97 |
| FaiI | YATR | 6 cut(s) | 16, 87, 294, 350, 386, 408 |
| Fnu4HI | GCNGC | 2 cut(s) | 19, 199 |
| FokI | GGATG | 1 cut(s) | 181 |
| FriOI | GRGCYC | 1 cut(s) | 97 |
| Fsp4HI | GCNGC | 2 cut(s) | 19, 199 |
| FspBI | CTAG | 1 cut(s) | 309 |
| GluI | GCNGC | 2 cut(s) | 19, 199 |
| HinfI | GANTC | 1 cut(s) | 355 |
| HphI | GGTGA | 1 cut(s) | 341 |
| Hpy166II | GTNNAC | 1 cut(s) | 299 |
| Hpy188I | TCNGA | 1 cut(s) | 113 |
| Hpy8I | GTNNAC | 1 cut(s) | 299 |
| HpyCH4IV | ACGT | 1 cut(s) | 27 |
| HpyCH4V | TGCA | 1 cut(s) | 299 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 15 |
| HpyF3I | CTNAG | 1 cut(s) | 154 |
| HpySE526I | ACGT | 1 cut(s) | 27 |
| Kzo9I | GATC | 1 cut(s) | 379 |
| LguI | GCTCTTC | 1 cut(s) | 279 |
| LmnI | GCTCC | 1 cut(s) | 6 |
| LpnPI | CCDG | 2 cut(s) | 357, 381 |
| Lsp1109I | GCAGC | 1 cut(s) | 5 |
| MaeI | CTAG | 1 cut(s) | 309 |
| MaeII | ACGT | 1 cut(s) | 27 |
| MalI | GATC | 1 cut(s) | 381 |
| MboI | GATC | 1 cut(s) | 379 |
| MboII | GAAGA | 3 cut(s) | 55, 296, 334 |
| MhlI | GDGCHC | 2 cut(s) | 97, 301 |
| MnlI | CCTC | 4 cut(s) | 55, 159, 241, 300 |
| MseI | TTAA | 2 cut(s) | 206, 360 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspA1I | CMGCKG | 1 cut(s) | 79 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 15 |
| NdeII | GATC | 1 cut(s) | 379 |
| PciSI | GCTCTTC | 1 cut(s) | 279 |
| PfeI | GAWTC | 1 cut(s) | 355 |
| PkrI | GCNGC | 2 cut(s) | 20, 200 |
| Ppu21I | YACGTR | 1 cut(s) | 28 |
| PvuII | CAGCTG | 1 cut(s) | 79 |
| RsaI | GTAC | 1 cut(s) | 30 |
| RsaNI | GTAC | 1 cut(s) | 29 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SapI | GCTCTTC | 1 cut(s) | 279 |
| SaqAI | TTAA | 2 cut(s) | 206, 360 |
| SatI | GCNGC | 2 cut(s) | 19, 199 |
| Sau3AI | GATC | 1 cut(s) | 379 |
| SduI | GDGCHC | 2 cut(s) | 97, 301 |
| SetI | ASST | 5 cut(s) | 30, 81, 134, 252, 336 |
| SfcI | CTRYAG | 1 cut(s) | 406 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| SsiI | CCGC | 1 cut(s) | 199 |
| SspI | AATATT | 1 cut(s) | 364 |
| SspMI | CTAG | 1 cut(s) | 309 |
| TaiI | ACGT | 1 cut(s) | 30 |
| TaqI | TCGA | 1 cut(s) | 282 |
| TauI | GCSGC | 1 cut(s) | 201 |
| TfiI | GAWTC | 1 cut(s) | 355 |
| Tru1I | TTAA | 2 cut(s) | 206, 360 |
| Tru9I | TTAA | 2 cut(s) | 206, 360 |
| TseI | GCWGC | 1 cut(s) | 18 |
| TspDTI | ATGAA | 1 cut(s) | 191 |
| VneI | GTGCAC | 1 cut(s) | 297 |
| XspI | CTAG | 1 cut(s) | 309 |