Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007552

Physical Location & Seq

Genomic Coordinates Forward (+)

43961125 .. 43964271

Gene Structure 3147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGATAAACTTGGTCTGAGGGCTGGAACTGAGAAGGTTGATGAGGATGATGATGAAGCTGATATTGTCGGTTGTCGCAGATTAAAAGTAGAGAATGTAAAAGCAATATCCCCTAACTTGTTAGAGTTTAGCTTCCTCGGTAAAGATTTAATCAGATATAAAAATGCTGTTGAAGTTGATCTTCCTGTTTATGAGGCAATTGTAATGTTTCAGGCTGGTAAGTGTAGCAGTGACGAACTGTTTGACAAGTTGGACACCCGCAAATTGAATGCACATTTAAAGGCACTGATGTCCGGCCTTACAGCGGAAGTATTGCTTGCAGCCGTGCATACAATGTGTCTATCACATTGGATAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003824 GO:0003916 GO:0003917 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006265 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016853 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Topo_C_assoc Topoisom_I Topoisom_I_N

Protein Analysis

119

Amino Acids

13.29

Weight (kDa)

5.34

Isoelectric Point (pI)

14.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topoisom_I	PF01028	1 - 105	4.7e-32	Eukaryotic DNA topoisomerase I, catalytic core

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0007552)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420261 RchiOBHm_Chr4g0420281
rosa_laevigata	RLG00000008411 RLG00000009409
rosa_multiflora	Rmu_sc0001009.1_g000027 Rmu_sc0003539.1_g000009
rosa_roxburghii	Rroxscaffold_5G00362910 Rroxscaffold_6G00399630
rosa_rugosa	Rorug04G0161700
rosa_samantha	Rh1AG127300 Rh1CG121200 Rh2AG194800 Rh2BG274300 Rh2BG558800 Rh2CG315200 Rh2CG528700 Rh2DG202300 Rh4AG223700 Rh4BG226500 Rh4CG233600 Rh4CG237100 Rh4CG237400 Rh4CG237900 Rh5AG169700 Rh7CG456900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	259, 305
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	173, 268
AluBI	AGCT	2 cut(s)	59, 132
AluI	AGCT	2 cut(s)	59, 132
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	320
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
BbvI	GCAGC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	308
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	8, 21
BseXI	GCAGC	1 cut(s)	332
BshFI	GGCC	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	2 cut(s)	259, 305
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	9, 22
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	17, 30
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	235, 284
Cac8I	GCNNGC	1 cut(s)	318
CviJI	RGCY	6 cut(s)	23, 59, 132, 215, 297, 323
CviKI_1	RGCY	6 cut(s)	23, 59, 132, 215, 297, 323
DdeI	CTNAG	2 cut(s)	17, 30
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DraI	TTTAAA	1 cut(s)	279
FaiI	YATR	3 cut(s)	159, 192, 330
FalI	AAGNNNNNCTT	4 cut(s)	165, 197, 300, 332
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	294
HpaII	CCGG	1 cut(s)	294
Hpy188I	TCNGA	2 cut(s)	18, 155
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	272, 320, 328
HpyF3I	CTNAG	2 cut(s)	17, 30
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	5 cut(s)	9, 197, 198, 201, 307
Lsp1109I	GCAGC	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	173
MfeI	CAATTG	1 cut(s)	198
MluCI	AATT	2 cut(s)	198, 263
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	4 cut(s)	12, 37, 146, 187
MseI	TTAA	3 cut(s)	83, 149, 278
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	274
NdeII	GATC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	230
PctI	GAATGC	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	322
SaqAI	TTAA	3 cut(s)	83, 149, 278
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	178
SetI	ASST	3 cut(s)	39, 61, 134
Sse9I	AATT	2 cut(s)	198, 263
SsiI	CCGC	2 cut(s)	259, 305
TaaI	ACNGT	1 cut(s)	240
TasI	AATT	2 cut(s)	198, 263
Tru1I	TTAA	3 cut(s)	83, 149, 278
Tru9I	TTAA	3 cut(s)	83, 149, 278
TscAI	CASTG	2 cut(s)	235, 291
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	2 cut(s)	235, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.