Rh7CG456900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007552
Physical Location & Seq
Reverse (-)
60119895 .. 60120596
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG456900.1

Sequence Viewer

Length: 261 bp
ATGTCGTCGCTTGCCAAGCCTTCTCTCACCGCCTCCTTCGCTCCTAGGTTCGCCTACCTCAACTTCCTTGCTAACCTGTGCACAATTGCGTGCACCCCATCCCTCAATGCCCTATTGAAGCAGACCACCACCTCTCCATGGGAGCATGTGTCGAAGCCCTTCAAGCTGTTACTGGAGATGCAGGTCCTTGTCAGTGTGGGCCCTGCAAAGCAGACTTTGGGATTTTGGGGTTTTCAGCAAGACGACGCAATCTCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.43

Weight (kDa)

8.74

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
AciI CCGC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 2 cut(s) 118, 163
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw21I GWGCWC 2 cut(s) 83, 95
Alw44I GTGCAC 2 cut(s) 79, 91
AoxI GGCC 1 cut(s) 199
ApaI GGGCCC 1 cut(s) 203
ApaLI GTGCAC 2 cut(s) 79, 91
Asp700I GAANNNNTTC 1 cut(s) 158
AspA2I CCTAGG 1 cut(s) 44
AspS9I GGNCC 3 cut(s) 184, 199, 200
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 184
AvrII CCTAGG 1 cut(s) 44
BaeGI GKGCMC 3 cut(s) 83, 95, 203
BanII GRGCYC 1 cut(s) 203
Bbv12I GWGCWC 2 cut(s) 83, 95
BccI CCATC 1 cut(s) 106
BfaI CTAG 2 cut(s) 45, 259
BfuAI ACCTGC 1 cut(s) 172
BlnI CCTAGG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 3 cut(s) 184, 199, 200
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 44, 137
BsaXI ACNNNNNCTCC 4 cut(s) 118, 134, 148, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 44, 137
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 177
BseSI GKGCMC 3 cut(s) 83, 95, 203
BshFI GGCC 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 83, 95
BslI CCNNNNNNNGG 1 cut(s) 138
BsnI GGCC 1 cut(s) 201
Bsp120I GGGCCC 1 cut(s) 199
Bsp1286I GDGCHC 3 cut(s) 83, 95, 203
Bsp19I CCATGG 1 cut(s) 137
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 201
BspMI ACCTGC 1 cut(s) 172
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 44, 137
BssT1I CCWWGG 2 cut(s) 44, 137
BstC8I GCNNGC 2 cut(s) 12, 91
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 98
BstMWI GCNNNNNNNGC 3 cut(s) 16, 38, 163
BstNSI RCATGY 1 cut(s) 149
BstSLI GKGCMC 3 cut(s) 83, 95, 203
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 137
BtsCI GGATG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 199
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 12, 91
Cfr13I GGNCC 3 cut(s) 184, 199, 200
CseI GACGC 1 cut(s) 254
CviAII CATG 2 cut(s) 138, 146
CviJI RGCY 4 cut(s) 19, 157, 166, 201
CviKI_1 RGCY 4 cut(s) 19, 157, 166, 201
Eco130I CCWWGG 2 cut(s) 44, 137
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 184
EcoO109I RGGNCCY 2 cut(s) 184, 200
EcoT14I CCWWGG 2 cut(s) 44, 137
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 2 cut(s) 44, 137
FaeI CATG 2 cut(s) 141, 149
FaiI YATR 2 cut(s) 139, 147
FatI CATG 2 cut(s) 137, 145
FokI GGATG 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 203
FspBI CTAG 2 cut(s) 45, 259
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 1 cut(s) 201
HgaI GACGC 1 cut(s) 254
Hin1II CATG 2 cut(s) 141, 149
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 81, 93
Hpy8I GTNNAC 2 cut(s) 81, 93
Hpy99I CGWCG 2 cut(s) 10, 248
HpyAV CCTTC 3 cut(s) 30, 46, 169
HpyCH4V TGCA 4 cut(s) 81, 93, 181, 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 38, 163
Hsp92II CATG 2 cut(s) 141, 149
LmnI GCTCC 2 cut(s) 46, 142
LpnPI CCDG 4 cut(s) 89, 158, 167, 216
LweI GCATC 1 cut(s) 168
MaeI CTAG 2 cut(s) 45, 259
MaeIII GTNAC 1 cut(s) 168
MfeI CAATTG 1 cut(s) 84
MhlI GDGCHC 3 cut(s) 83, 95, 203
MluCI AATT 1 cut(s) 84
MnlI CCTC 4 cut(s) 43, 68, 113, 142
MroXI GAANNNNTTC 1 cut(s) 158
MunI CAATTG 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 16, 38, 163
NcoI CCATGG 1 cut(s) 137
NlaIII CATG 2 cut(s) 141, 149
NlaIV GGNNCC 1 cut(s) 201
NspI RCATGY 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 201
PspOMI GGGCCC 1 cut(s) 199
PspPI GGNCC 3 cut(s) 184, 199, 200
PspPPI RGGWCCY 1 cut(s) 184
Sau96I GGNCC 3 cut(s) 184, 199, 200
SduI GDGCHC 3 cut(s) 83, 95, 203
SetI ASST 6 cut(s) 50, 60, 78, 134, 168, 186
SfaNI GCATC 1 cut(s) 168
SinI GGWCC 1 cut(s) 184
Sse9I AATT 1 cut(s) 84
SsiI CCGC 1 cut(s) 30
SspMI CTAG 2 cut(s) 45, 259
StyI CCWWGG 2 cut(s) 44, 137
TaqI TCGA 1 cut(s) 152
TasI AATT 1 cut(s) 84
TscAI CASTG 1 cut(s) 199
TspRI CASTG 1 cut(s) 199
VneI GTGCAC 2 cut(s) 79, 91
VpaK11BI GGWCC 1 cut(s) 184
XceI RCATGY 1 cut(s) 149
XmaJI CCTAGG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 2 cut(s) 45, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.