DNA topoisomerase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0420261 RchiOBHm_Chr4g0420281 |
| rosa_laevigata | RLG00000008411 RLG00000009409 |
| rosa_multiflora | Rmu_sc0001009.1_g000027 Rmu_sc0003539.1_g000009 |
| rosa_roxburghii | Rroxscaffold_5G00362910 Rroxscaffold_6G00399630 |
| rosa_rugosa | Rorug04G0161700 |
| rosa_samantha | Rh1AG127300 Rh1CG121200 Rh2AG194800 Rh2BG274300 Rh2BG558800 Rh2CG315200 Rh2CG528700 Rh2DG202300 Rh4AG223700 Rh4BG226500 Rh4CG233600 Rh4CG237100 Rh4CG237400 Rh4CG237900 Rh5AG169700 Rh7CG456900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 13 |
| AciI | CCGC | 1 cut(s) | 64 |
| AclWI | GGATC | 1 cut(s) | 250 |
| AcuI | CTGAAG | 2 cut(s) | 185, 275 |
| AgsI | TTSAA | 1 cut(s) | 119 |
| AluBI | AGCT | 3 cut(s) | 199, 216, 289 |
| AluI | AGCT | 3 cut(s) | 199, 216, 289 |
| Alw21I | GWGCWC | 2 cut(s) | 166, 256 |
| Alw44I | GTGCAC | 2 cut(s) | 162, 252 |
| AlwI | GGATC | 1 cut(s) | 250 |
| ApaLI | GTGCAC | 2 cut(s) | 162, 252 |
| AspLEI | GCGC | 1 cut(s) | 231 |
| AsuHPI | GGTGA | 2 cut(s) | 206, 296 |
| BaeGI | GKGCMC | 2 cut(s) | 166, 256 |
| Bbv12I | GWGCWC | 2 cut(s) | 166, 256 |
| BclI | TGATCA | 1 cut(s) | 262 |
| BfaI | CTAG | 1 cut(s) | 174 |
| BfmI | CTRYAG | 1 cut(s) | 20 |
| BfuAI | ACCTGC | 1 cut(s) | 13 |
| BisI | GCNGC | 1 cut(s) | 64 |
| BlsI | GCNGC | 1 cut(s) | 65 |
| BseGI | GGATG | 1 cut(s) | 40 |
| BseSI | GKGCMC | 2 cut(s) | 166, 256 |
| BsiHKAI | GWGCWC | 2 cut(s) | 166, 256 |
| Bsp1286I | GDGCHC | 2 cut(s) | 166, 256 |
| Bsp143I | GATC | 3 cut(s) | 242, 262, 279 |
| BspACI | CCGC | 1 cut(s) | 64 |
| BspMAI | CTGCAG | 1 cut(s) | 24 |
| BspMI | ACCTGC | 1 cut(s) | 13 |
| BspPI | GGATC | 1 cut(s) | 250 |
| BspQI | GCTCTTC | 1 cut(s) | 144 |
| BssMI | GATC | 3 cut(s) | 242, 262, 279 |
| Bst6I | CTCTTC | 1 cut(s) | 144 |
| BstC8I | GCNNGC | 1 cut(s) | 20 |
| BstF5I | GGATG | 1 cut(s) | 40 |
| BstHHI | GCGC | 1 cut(s) | 231 |
| BstKTI | GATC | 3 cut(s) | 245, 265, 282 |
| BstMBI | GATC | 3 cut(s) | 242, 262, 279 |
| BstSFI | CTRYAG | 1 cut(s) | 20 |
| BstSLI | GKGCMC | 2 cut(s) | 166, 256 |
| BtsCI | GGATG | 1 cut(s) | 40 |
| BveI | ACCTGC | 1 cut(s) | 13 |
| Cac8I | GCNNGC | 1 cut(s) | 20 |
| CfoI | GCGC | 1 cut(s) | 231 |
| CviJI | RGCY | 4 cut(s) | 154, 199, 216, 289 |
| CviKI_1 | RGCY | 4 cut(s) | 154, 199, 216, 289 |
| DpnI | GATC | 3 cut(s) | 244, 264, 281 |
| DpnII | GATC | 3 cut(s) | 242, 262, 279 |
| Eam1104I | CTCTTC | 1 cut(s) | 144 |
| EarI | CTCTTC | 1 cut(s) | 144 |
| Eco32I | GATATC | 2 cut(s) | 145, 211 |
| Eco57I | CTGAAG | 2 cut(s) | 185, 275 |
| EcoRV | GATATC | 2 cut(s) | 145, 211 |
| FaiI | YATR | 4 cut(s) | 159, 225, 249, 298 |
| FbaI | TGATCA | 1 cut(s) | 262 |
| Fnu4HI | GCNGC | 1 cut(s) | 64 |
| FokI | GGATG | 1 cut(s) | 47 |
| Fsp4HI | GCNGC | 1 cut(s) | 64 |
| FspBI | CTAG | 1 cut(s) | 174 |
| GlaI | GCGC | 1 cut(s) | 230 |
| GluI | GCNGC | 1 cut(s) | 64 |
| HhaI | GCGC | 1 cut(s) | 231 |
| Hin6I | GCGC | 1 cut(s) | 229 |
| HinP1I | GCGC | 1 cut(s) | 229 |
| HphI | GGTGA | 2 cut(s) | 206, 296 |
| Hpy166II | GTNNAC | 2 cut(s) | 164, 254 |
| Hpy8I | GTNNAC | 2 cut(s) | 164, 254 |
| HpyCH4V | TGCA | 3 cut(s) | 22, 164, 254 |
| HspAI | GCGC | 1 cut(s) | 229 |
| Ksp22I | TGATCA | 1 cut(s) | 262 |
| Kzo9I | GATC | 3 cut(s) | 242, 262, 279 |
| LguI | GCTCTTC | 1 cut(s) | 144 |
| LpnPI | CCDG | 5 cut(s) | 8, 32, 188, 225, 278 |
| MaeI | CTAG | 1 cut(s) | 174 |
| MalI | GATC | 3 cut(s) | 244, 264, 281 |
| MboI | GATC | 3 cut(s) | 242, 262, 279 |
| MboII | GAAGA | 3 cut(s) | 161, 199, 289 |
| MhlI | GDGCHC | 2 cut(s) | 166, 256 |
| MluCI | AATT | 1 cut(s) | 257 |
| MnlI | CCTC | 3 cut(s) | 25, 106, 165 |
| MseI | TTAA | 2 cut(s) | 71, 269 |
| MslI | CAYNNNNRTG | 1 cut(s) | 138 |
| NdeII | GATC | 3 cut(s) | 242, 262, 279 |
| PciSI | GCTCTTC | 1 cut(s) | 144 |
| PkrI | GCNGC | 1 cut(s) | 65 |
| PstI | CTGCAG | 1 cut(s) | 24 |
| RseI | CAYNNNNRTG | 1 cut(s) | 138 |
| SapI | GCTCTTC | 1 cut(s) | 144 |
| SaqAI | TTAA | 2 cut(s) | 71, 269 |
| SatI | GCNGC | 1 cut(s) | 64 |
| Sau3AI | GATC | 3 cut(s) | 242, 262, 279 |
| SbfI | CCTGCAGG | 1 cut(s) | 24 |
| SdaI | CCTGCAGG | 1 cut(s) | 24 |
| SduI | GDGCHC | 2 cut(s) | 166, 256 |
| SetI | ASST | 7 cut(s) | 27, 117, 201, 207, 218, 291, 297 |
| SfcI | CTRYAG | 1 cut(s) | 20 |
| SgeI | CNNG | 9 cut(s) | 17, 27, 31, 35, 118, 152, 186, 215, 252 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 138 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 24 |
| Sse9I | AATT | 1 cut(s) | 257 |
| SsiI | CCGC | 1 cut(s) | 64 |
| SspMI | CTAG | 1 cut(s) | 174 |
| TaqI | TCGA | 1 cut(s) | 147 |
| TasI | AATT | 1 cut(s) | 257 |
| TauI | GCSGC | 1 cut(s) | 66 |
| Tru1I | TTAA | 2 cut(s) | 71, 269 |
| Tru9I | TTAA | 2 cut(s) | 71, 269 |
| TspDTI | ATGAA | 1 cut(s) | 57 |
| VneI | GTGCAC | 2 cut(s) | 162, 252 |
| XspI | CTAG | 1 cut(s) | 174 |