Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007552

Physical Location & Seq

Genomic Coordinates Forward (+)

21601929 .. 21603522

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00399630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTCGTCGCTAGCCAAGCCTTCTCTCACCGCCTCCTCCACTCATAGGTCCGCCTACCCCAACTTCCTTGCTAACCTGCGCGCATTTGCACGCACCCCATTCCTCGCTGCAGTGTCAAATCCCCGCAAGCTGTTACCAGAGATGCAGATCCTTGTCAATGTGGGTGATGCTTTTATCGGGTATTTTGTGAGCAAGCTTTTGAATCTGCCATCACATTATGCAGCTGGTTTGTTATTGGTTGCGTGCTGCGCGGTGCATGTGGTACTCATCGCACTCCTCCATGTTGCGAGCAATAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

100

Amino Acids

10.7

Weight (kDa)

9.92

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007552)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0420261 RchiOBHm_Chr4g0420281
rosa_laevigata	RLG00000008411 RLG00000009409
rosa_multiflora	Rmu_sc0001009.1_g000027 Rmu_sc0003539.1_g000009
rosa_roxburghii	Rroxscaffold_5G00362910 Rroxscaffold_6G00399630
rosa_rugosa	Rorug04G0161700
rosa_samantha	Rh1AG127300 Rh1CG121200 Rh2AG194800 Rh2BG274300 Rh2BG558800 Rh2CG315200 Rh2CG528700 Rh2DG202300 Rh4AG223700 Rh4BG226500 Rh4CG233600 Rh4CG237100 Rh4CG237400 Rh4CG237900 Rh5AG169700 Rh7CG456900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AccII	CGCG	2 cut(s)	81, 251
AciI	CCGC	4 cut(s)	30, 51, 124, 251
AclWI	GGATC	1 cut(s)	142
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	202
AluBI	AGCT	3 cut(s)	130, 196, 224
AluI	AGCT	3 cut(s)	130, 196, 224
AlwI	GGATC	1 cut(s)	142
ApeKI	GCWGC	3 cut(s)	107, 221, 246
AspLEI	GCGC	3 cut(s)	81, 83, 251
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	2 cut(s)	19, 176
AsuNHI	GCTAGC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	48
BbvI	GCAGC	3 cut(s)	94, 233, 233
BccI	CCATC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	84
BisI	GCNGC	3 cut(s)	108, 222, 247
BlsI	GCNGC	3 cut(s)	109, 223, 248
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmsI	GCATC	2 cut(s)	132, 157
BmtI	GCTAGC	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	146
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	45
BsePI	GCGCGC	1 cut(s)	79
BseRI	GAGGAG	2 cut(s)	25, 266
BseXI	GCAGC	3 cut(s)	94, 233, 233
Bsh1236I	CGCG	2 cut(s)	81, 251
BslI	CCNNNNNNNGG	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	4 cut(s)	30, 51, 124, 251
BspFNI	CGCG	2 cut(s)	81, 251
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	84
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	1 cut(s)	142
BssHII	GCGCGC	1 cut(s)	79
BssMI	GATC	1 cut(s)	147
BstC8I	GCNNGC	7 cut(s)	12, 81, 91, 128, 194, 244, 289
BstFNI	CGCG	2 cut(s)	81, 251
BstHHI	GCGC	3 cut(s)	81, 83, 251
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 248
BstNSI	RCATGY	1 cut(s)	260
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	2 cut(s)	81, 251
BstV1I	GCAGC	3 cut(s)	94, 233, 233
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	7 cut(s)	12, 81, 91, 128, 194, 244, 289
CfoI	GCGC	3 cut(s)	81, 83, 251
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	2 cut(s)	257, 281
CviJI	RGCY	5 cut(s)	14, 19, 130, 196, 224
CviKI_1	RGCY	5 cut(s)	14, 19, 130, 196, 224
CviQI	GTAC	1 cut(s)	263
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	48
FaeI	CATG	2 cut(s)	260, 284
FaiI	YATR	4 cut(s)	45, 219, 258, 282
FatI	CATG	2 cut(s)	256, 280
FauI	CCCGC	1 cut(s)	131
Fnu4HI	GCNGC	3 cut(s)	108, 222, 247
Fsp4HI	GCNGC	3 cut(s)	108, 222, 247
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	3 cut(s)	80, 82, 250
GluI	GCNGC	3 cut(s)	108, 222, 247
HhaI	GCGC	3 cut(s)	81, 83, 251
Hin1II	CATG	2 cut(s)	260, 284
Hin6I	GCGC	3 cut(s)	79, 81, 249
HinP1I	GCGC	3 cut(s)	79, 81, 249
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	202
HphI	GGTGA	2 cut(s)	19, 176
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	30
HpyCH4V	TGCA	5 cut(s)	89, 110, 145, 221, 256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 248
Hsp92II	CATG	2 cut(s)	260, 284
HspAI	GCGC	3 cut(s)	79, 81, 249
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	3 cut(s)	89, 150, 210
Lsp1109I	GCAGC	3 cut(s)	94, 233, 233
LweI	GCATC	2 cut(s)	132, 157
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MflI	RGATCY	1 cut(s)	147
MnlI	CCTC	4 cut(s)	43, 46, 113, 287
MspA1I	CMGCKG	1 cut(s)	224
MvnI	CGCG	2 cut(s)	81, 251
MwoI	GCNNNNNNNGC	2 cut(s)	16, 248
NdeII	GATC	1 cut(s)	147
NheI	GCTAGC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	260, 284
NspI	RCATGY	1 cut(s)	260
PauI	GCGCGC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	109, 223, 248
PspPI	GGNCC	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	147
PteI	GCGCGC	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SatI	GCNGC	3 cut(s)	108, 222, 247
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	48
SetI	ASST	5 cut(s)	50, 78, 132, 198, 226
SfaNI	GCATC	2 cut(s)	132, 157
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	48
SsiI	CCGC	4 cut(s)	30, 51, 124, 251
SspMI	CTAG	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	202
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	3 cut(s)	107, 221, 246
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	48
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.