RchiOBHm_Chr3g0453861

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001834
Physical Location & Seq
Forward (+)
4142750 .. 4143475
726 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
ATGACTACTGCAACACAAGACGAAAACGTATCAGCCACCCAAAAGACCATAGCCAGTGCAGCCAATCTTGCTAACCTCCTACCGACCGGCACCGTTCTCGTATTTGAGACCCTCATTCCTAGTTTCTCCAACAACGGAGCATGCCATCCTGCCAACAAGGGCCTTTCCTCATCCATCATTCTAATTTGTGCTCTCATCTGCTTCTTCTCCTCCTTTACTGATAGCTTCATTGACAGTACCGATGGAAAATTCTATTATGGGATCGCCACTAGCACAGGCATACGCATCTTAAATCCTAGAACAAAAAAGATCACTTATGAGGAAAGAAAGCGCTTGGAAAAGTATAAAATCACGGGTAGAGATTATTTCCATGCCTTTTTGGCACTAACTGTGTTCTTGGTCTTTGCTCTTACCGACCTGAATGTGAAAAATTGTTTCTTTTCTGATGCGGGAGATGATCTCAATCAAATCATTATCAACTTGCCACTAGGAGCTGGGATTTTCGCATCCTTCTTATTCACTATTTTTCCAACTACTCGAAGAGGGATAGGATACACGCAGCCCCGGCCGAATAAGGAGGAAAAAGACGGGAACCAGACCTCGGTCATCACGACCGCTTCCAAGGGGTCGGAGGCGGAAATGGTGGGTGTGGTTGTAGAAGGAGCAGTTCAGTCTGAAGCTCAGGTCTCCGCGACAGCCTCAACCCCACCGCGCGCGATAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

241

Amino Acids

26.05

Weight (kDa)

6.15

Isoelectric Point (pI)

27.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 19 - 185 1.5e-58 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 89
AccII CGCG 4 cut(s) 692, 712, 714, 716
AciI CCGC 5 cut(s) 449, 615, 635, 690, 710
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 1 cut(s) 566
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 696
AfaI GTAC 1 cut(s) 238
AfeI AGCGCT 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 601
AluBI AGCT 3 cut(s) 225, 494, 680
AluI AGCT 3 cut(s) 225, 494, 680
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 101, 691
AlwI GGATC 1 cut(s) 269
Aor51HI AGCGCT 1 cut(s) 332
AoxI GGCC 2 cut(s) 160, 566
ApeKI GCWGC 2 cut(s) 59, 559
ApoI RAATTY 1 cut(s) 248
AspLEI GCGC 3 cut(s) 333, 714, 716
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 1 cut(s) 565
BanI GGYRCC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 71, 571
BccI CCATC 3 cut(s) 153, 182, 236
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciVI GTATCC 1 cut(s) 545
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 101, 691
BfaI CTAG 4 cut(s) 120, 270, 297, 488
BfoI RGCGCY 1 cut(s) 334
BfuI GTATCC 1 cut(s) 545
BglI GCCNNNNNGGC 1 cut(s) 380
BisI GCNGC 2 cut(s) 60, 560
BlsI GCNGC 2 cut(s) 61, 561
Bme1390I CCNGG 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 91, 593
BmrFI CCNGG 1 cut(s) 565
BmsI GCATC 3 cut(s) 294, 436, 515
BoxI GACNNNNGTC 1 cut(s) 602
BplI GAGNNNNNCTC 2 cut(s) 444, 476
Bpu10I CCTNAGC 1 cut(s) 681
BpuMI CCSGG 1 cut(s) 565
BsaBI GATNNNNATC 1 cut(s) 462
BsaI GGTCTC 2 cut(s) 101, 691
BsaJI CCNNGG 3 cut(s) 563, 600, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 601
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 462
BseDI CCNNGG 3 cut(s) 563, 600, 621
BseGI GGATG 3 cut(s) 145, 170, 506
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 601
BseMII CTCAG 1 cut(s) 695
BseNI ACTGG 1 cut(s) 54
BsePI GCGCGC 1 cut(s) 712
BseRI GAGGAG 1 cut(s) 199
BseX3I CGGCCG 1 cut(s) 566
BseXI GCAGC 2 cut(s) 71, 571
BseYI CCCAGC 1 cut(s) 494
BsgI GTGCAG 1 cut(s) 78
Bsh1236I CGCG 4 cut(s) 692, 712, 714, 716
Bsh1285I CGRYCG 3 cut(s) 87, 569, 615
BshFI GGCC 2 cut(s) 162, 568
BshNI GGYRCC 1 cut(s) 89
BsiEI CGRYCG 3 cut(s) 87, 569, 615
BsiHKAI GWGCWC 1 cut(s) 193
BsiSI CCGG 2 cut(s) 87, 565
BslI CCNNNNNNNGG 1 cut(s) 601
BsmAI GTCTC 2 cut(s) 101, 691
BsnI GGCC 2 cut(s) 162, 568
Bso31I GGTCTC 2 cut(s) 101, 691
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 3 cut(s) 261, 309, 457
BspACI CCGC 5 cut(s) 449, 615, 635, 690, 710
BspANI GGCC 2 cut(s) 162, 568
BspCNI CTCAG 1 cut(s) 694
BspFNI CGCG 4 cut(s) 692, 712, 714, 716
BspLI GGNNCC 2 cut(s) 91, 593
BspPI GGATC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 89
BspTNI GGTCTC 2 cut(s) 101, 691
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 1 cut(s) 54
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 3 cut(s) 563, 600, 621
BssHII GCGCGC 1 cut(s) 712
BssMI GATC 3 cut(s) 261, 309, 457
BssT1I CCWWGG 1 cut(s) 621
Bst4CI ACNGT 3 cut(s) 94, 236, 391
Bst6I CTCTTC 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 142, 714
BstDEI CTNAG 1 cut(s) 681
BstF5I GGATG 3 cut(s) 145, 170, 506
BstFNI CGCG 4 cut(s) 692, 712, 714, 716
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 3 cut(s) 333, 714, 716
BstKTI GATC 3 cut(s) 264, 312, 460
BstMAI GTCTC 2 cut(s) 101, 691
BstMBI GATC 3 cut(s) 261, 309, 457
BstMCI CGRYCG 3 cut(s) 87, 569, 615
BstMWI GCNNNNNNNGC 4 cut(s) 59, 68, 380, 565
BstNSI RCATGY 1 cut(s) 144
BstPAI GACNNNNGTC 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 563
BstUI CGCG 4 cut(s) 692, 712, 714, 716
BstV1I GCAGC 2 cut(s) 71, 571
BstZI CGGCCG 1 cut(s) 566
BsuI GTATCC 1 cut(s) 545
BsuRI GGCC 2 cut(s) 162, 568
BtsCI GGATG 3 cut(s) 145, 170, 506
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 142, 714
CfoI GCGC 3 cut(s) 333, 714, 716
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 141, 371
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 681
DpnI GATC 3 cut(s) 263, 311, 459
DpnII GATC 3 cut(s) 261, 309, 457
EaeI YGGCCR 1 cut(s) 566
EagI CGGCCG 1 cut(s) 566
Eam1104I CTCTTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 535
EciI GGCGGA 1 cut(s) 650
EclXI CGGCCG 1 cut(s) 566
Eco130I CCWWGG 1 cut(s) 621
Eco31I GGTCTC 2 cut(s) 101, 691
Eco47III AGCGCT 1 cut(s) 332
Eco52I CGGCCG 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 696
EcoO109I RGGNCCY 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 2 cut(s) 144, 374
FaiI YATR 7 cut(s) 50, 142, 258, 281, 318, 345, 372
FatI CATG 2 cut(s) 140, 370
FauI CCCGC 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 60, 560
FokI GGATG 3 cut(s) 132, 157, 493
Fsp4HI GCNGC 2 cut(s) 60, 560
FspBI CTAG 4 cut(s) 120, 270, 297, 488
GlaI GCGC 3 cut(s) 332, 713, 715
GluI GCNGC 2 cut(s) 60, 560
GsaI CCCAGC 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 2 cut(s) 162, 568
HapII CCGG 2 cut(s) 87, 565
HhaI GCGC 3 cut(s) 333, 714, 716
Hin1II CATG 2 cut(s) 144, 374
Hin6I GCGC 3 cut(s) 331, 712, 714
HinP1I GCGC 3 cut(s) 331, 712, 714
HpaII CCGG 2 cut(s) 87, 565
Hpy188I TCNGA 3 cut(s) 445, 631, 676
Hpy188III TCNNGA 1 cut(s) 610
HpyAV CCTTC 2 cut(s) 520, 653
HpyCH4III ACNGT 3 cut(s) 94, 236, 391
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 11, 59
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 68, 380, 565
HpyF3I CTNAG 1 cut(s) 681
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 144, 374
HspAI GCGC 3 cut(s) 331, 712, 714
Kzo9I GATC 3 cut(s) 261, 309, 457
LmnI GCTCC 3 cut(s) 137, 491, 662
LpnPI CCDG 9 cut(s) 67, 100, 162, 261, 431, 480, 578, 608, 668
Lsp1109I GCAGC 2 cut(s) 71, 571
LweI GCATC 3 cut(s) 294, 436, 515
MaeI CTAG 4 cut(s) 120, 270, 297, 488
MaeII ACGT 1 cut(s) 27
MalI GATC 3 cut(s) 263, 311, 459
MauBI CGCGCGCG 1 cut(s) 712
MboI GATC 3 cut(s) 261, 309, 457
MboII GAAGA 2 cut(s) 196, 552
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 3 cut(s) 183, 248, 430
MmeI TCCRAC 3 cut(s) 153, 554, 609
MseI TTAA 1 cut(s) 290
MspI CCGG 2 cut(s) 87, 565
MspR9I CCNGG 1 cut(s) 565
MvnI CGCG 4 cut(s) 692, 712, 714, 716
MwoI GCNNNNNNNGC 4 cut(s) 59, 68, 380, 565
NciI CCSGG 1 cut(s) 565
NdeII GATC 3 cut(s) 261, 309, 457
NlaIII CATG 2 cut(s) 144, 374
NlaIV GGNNCC 2 cut(s) 91, 593
NspI RCATGY 1 cut(s) 144
PaeI GCATGC 1 cut(s) 144
PauI GCGCGC 1 cut(s) 712
PcsI WCGNNNNNNNCGW 1 cut(s) 608
PkrI GCNGC 2 cut(s) 61, 561
PshAI GACNNNNGTC 1 cut(s) 602
PspFI CCCAGC 1 cut(s) 494
PspN4I GGNNCC 2 cut(s) 91, 593
PspPI GGNCC 1 cut(s) 160
PteI GCGCGC 1 cut(s) 712
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 2 cut(s) 60, 560
Sau3AI GATC 3 cut(s) 261, 309, 457
Sau96I GGNCC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 565
SduI GDGCHC 1 cut(s) 193
SetI ASST 8 cut(s) 30, 78, 227, 420, 496, 602, 682, 687
SfaNI GCATC 3 cut(s) 294, 436, 515
SphI GCATGC 1 cut(s) 144
Sse9I AATT 3 cut(s) 183, 248, 430
SsiI CCGC 5 cut(s) 449, 615, 635, 690, 710
SspMI CTAG 4 cut(s) 120, 270, 297, 488
StyD4I CCNGG 1 cut(s) 563
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 3 cut(s) 94, 236, 391
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 538
TaqII GACCGA 1 cut(s) 592
TasI AATT 3 cut(s) 183, 248, 430
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 1 cut(s) 61
TseI GCWGC 2 cut(s) 59, 559
TspDTI ATGAA 1 cut(s) 217
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 1 cut(s) 61
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 144
XspI CTAG 4 cut(s) 120, 270, 297, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.