RchiOBHm_Chr3g0453871

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001834
Physical Location & Seq
Forward (+)
4170786 .. 4171427
642 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
ATGACTAACGAAACAAAAAACGAAGATCACATAACACCTACTCAAAAGACCATAGCCAGTGCAGCTAATCTTGCTAACCTCCTACCTACCGGCACCGTCCTGGCATTTGAGACCCTCATTCCTAGTTTCTCTAACAATGGAGCATGCCATCCTGCCAATAAGGGCCTTTCAATATCCATCATTATAATCTGTGCCATTATCTGCTGCTTCTGCTCCTTTACTGATAGCTTCATAGACAGTACCGATGGAAAATTCTACTATGGTATCATCACTCGTGAAGGCATATACATCTTAAATCCTAGAGCAAAGGAGCTTACGATTGACGAAAAAAAGCGCTTGAGAAAGTATAAAATAAAGCCTGTAGATTATTTTCACGCTTTTTTGTCACTAACTGTGTTCTTGATATTTGCTCTTACCGACCTCCACGTGAAAAATTGTTTCTTTCCGGACGCGGGAGATGATCTCAAGCAAATCATTATCAATTTGCCTCTAGGAACTGGGGTTTTTGTATCCTTATTATTCACAATTTTTCCAACTACTCGAAGAGGTATAGGATACACGCAGCCCCGGCCAAATAAGGGAAAAAAAAGTGAGAACCATACCTCGACCACCACGGACTTGGAAAAAGAGGTGAGGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

213

Amino Acids

23.75

Weight (kDa)

8.69

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 20 - 186 3.2e-59 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 92
AccII CGCG 1 cut(s) 452
AccIII TCCGGA 1 cut(s) 445
AciI CCGC 1 cut(s) 452
AcoI YGGCCR 1 cut(s) 569
AcsI RAATTY 1 cut(s) 251
AcvI CACGTG 1 cut(s) 427
AfaI GTAC 1 cut(s) 241
AfeI AGCGCT 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 452, 578
AgsI TTSAA 1 cut(s) 171
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 3 cut(s) 65, 228, 313
AluI AGCT 3 cut(s) 65, 228, 313
Alw26I GTCTC 1 cut(s) 104
Aor13HI TCCGGA 1 cut(s) 445
Aor51HI AGCGCT 1 cut(s) 335
AoxI GGCC 2 cut(s) 163, 569
ApeKI GCWGC 3 cut(s) 62, 204, 562
ApoI RAATTY 1 cut(s) 251
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 568
BaeI ACNNNNGTAYC 2 cut(s) 247, 280
BanI GGYRCC 1 cut(s) 92
BauI CACGAG 1 cut(s) 273
BbrPI CACGTG 1 cut(s) 427
BbvI GCAGC 3 cut(s) 74, 191, 574
BccI CCATC 3 cut(s) 156, 185, 239
BciT130I CCWGG 1 cut(s) 101
BciVI GTATCC 2 cut(s) 520, 548
BcnI CCSGG 1 cut(s) 568
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 3 cut(s) 123, 300, 491
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 337
BfuI GTATCC 2 cut(s) 520, 548
BisI GCNGC 3 cut(s) 63, 205, 563
BlsI GCNGC 3 cut(s) 64, 206, 564
Bme1390I CCNGG 2 cut(s) 101, 568
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 2 cut(s) 101, 568
BmrI ACTGGG 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 507
BplI GAGNNNNNCTC 2 cut(s) 447, 479
BpuEI CTTGAG 2 cut(s) 358, 449
BpuMI CCSGG 1 cut(s) 568
BsaAI YACGTR 1 cut(s) 427
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 566, 612
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 2 cut(s) 452, 578
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 57, 502
BseAI TCCGGA 1 cut(s) 445
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 566, 612
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 452, 578
BseNI ACTGG 2 cut(s) 57, 502
BseXI GCAGC 3 cut(s) 74, 191, 574
BsgI GTGCAG 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 2 cut(s) 165, 571
BshNI GGYRCC 1 cut(s) 92
BsiSI CCGG 3 cut(s) 90, 446, 568
BslI CCNNNNNNNGG 2 cut(s) 452, 578
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 2 cut(s) 165, 571
Bso31I GGTCTC 1 cut(s) 104
Bsp13I TCCGGA 1 cut(s) 445
Bsp143I GATC 2 cut(s) 25, 460
BspACI CCGC 1 cut(s) 452
BspANI GGCC 2 cut(s) 165, 571
BspEI TCCGGA 1 cut(s) 445
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 2 cut(s) 57, 502
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 566, 612
BssMI GATC 2 cut(s) 25, 460
BssSI CACGAG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 3 cut(s) 97, 239, 394
Bst6I CTCTTC 1 cut(s) 538
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 145
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 1 cut(s) 452
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 2 cut(s) 28, 463
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 2 cut(s) 25, 460
BstMWI GCNNNNNNNGC 4 cut(s) 62, 71, 210, 568
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 99, 566
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 3 cut(s) 74, 191, 574
BstXI CCANNNNNNTGG 1 cut(s) 619
BsuI GTATCC 2 cut(s) 520, 548
BsuRI GGCC 2 cut(s) 165, 571
BtgI CCRYGG 1 cut(s) 612
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 145
CfoI GCGC 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 1 cut(s) 458
Csp6I GTAC 1 cut(s) 240
CviAII CATG 1 cut(s) 144
CviJI RGCY 8 cut(s) 56, 65, 165, 228, 313, 358, 565, 571
CviKI_1 RGCY 8 cut(s) 56, 65, 165, 228, 313, 358, 565, 571
CviQI GTAC 1 cut(s) 240
DpnI GATC 2 cut(s) 27, 462
DpnII GATC 2 cut(s) 25, 460
EaeI YGGCCR 1 cut(s) 569
Eam1104I CTCTTC 1 cut(s) 538
EarI CTCTTC 1 cut(s) 538
Eco31I GGTCTC 1 cut(s) 104
Eco47III AGCGCT 1 cut(s) 335
Eco72I CACGTG 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 147
FatI CATG 1 cut(s) 143
FauI CCCGC 1 cut(s) 445
Fnu4HI GCNGC 3 cut(s) 63, 205, 563
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 3 cut(s) 63, 205, 563
FspBI CTAG 3 cut(s) 123, 300, 491
GlaI GCGC 1 cut(s) 335
GluI GCNGC 3 cut(s) 63, 205, 563
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 2 cut(s) 165, 571
HapII CCGG 3 cut(s) 90, 446, 568
HgaI GACGC 1 cut(s) 458
HhaI GCGC 1 cut(s) 336
Hin1II CATG 1 cut(s) 147
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HpaII CCGG 3 cut(s) 90, 446, 568
Hpy188III TCNNGA 3 cut(s) 275, 400, 446
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 3 cut(s) 97, 239, 394
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 71, 210, 568
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 1 cut(s) 147
HspAI GCGC 1 cut(s) 334
Kpn2I TCCGGA 1 cut(s) 445
Kzo9I GATC 2 cut(s) 25, 460
LmnI GCTCC 3 cut(s) 140, 218, 310
LpnPI CCDG 9 cut(s) 70, 86, 103, 113, 165, 372, 459, 483, 581
Lsp1109I GCAGC 3 cut(s) 74, 191, 574
MaeI CTAG 3 cut(s) 123, 300, 491
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 384
MalI GATC 2 cut(s) 27, 462
MboI GATC 2 cut(s) 25, 460
MboII GAAGA 2 cut(s) 35, 555
MluCI AATT 4 cut(s) 251, 433, 481, 525
MmeI TCCRAC 1 cut(s) 557
MnlI CCTC 8 cut(s) 89, 125, 431, 498, 539, 613, 622, 627
MroI TCCGGA 1 cut(s) 445
MseI TTAA 1 cut(s) 293
MspI CCGG 3 cut(s) 90, 446, 568
MspR9I CCNGG 2 cut(s) 101, 568
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 4 cut(s) 62, 71, 210, 568
NciI CCSGG 1 cut(s) 568
NdeII GATC 2 cut(s) 25, 460
NlaIII CATG 1 cut(s) 147
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 384
NspI RCATGY 1 cut(s) 147
PaeI GCATGC 1 cut(s) 147
PkrI GCNGC 3 cut(s) 64, 206, 564
PmaCI CACGTG 1 cut(s) 427
PmlI CACGTG 1 cut(s) 427
Ppu21I YACGTR 1 cut(s) 427
PsiI TTATAA 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 99
PspCI CACGTG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 163
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 3 cut(s) 63, 205, 563
Sau3AI GATC 2 cut(s) 25, 460
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 101, 568
SfcI CTRYAG 1 cut(s) 360
SmlI CTYRAG 2 cut(s) 337, 464
SmoI CTYRAG 2 cut(s) 337, 464
SphI GCATGC 1 cut(s) 147
Sse9I AATT 4 cut(s) 251, 433, 481, 525
SsiI CCGC 1 cut(s) 452
SspMI CTAG 3 cut(s) 123, 300, 491
StyD4I CCNGG 2 cut(s) 99, 566
TaaI ACNGT 3 cut(s) 97, 239, 394
TaiI ACGT 1 cut(s) 429
TaqI TCGA 2 cut(s) 541, 605
TasI AATT 4 cut(s) 251, 433, 481, 525
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 384
TseI GCWGC 3 cut(s) 62, 204, 562
Tsp45I GTSAC 1 cut(s) 384
TspDTI ATGAA 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 1 cut(s) 64
XapI RAATTY 1 cut(s) 251
XceI RCATGY 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 616
XspI CTAG 3 cut(s) 123, 300, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.