RchiOBHm_Chr3g0463011

DnaJ homolog subfamily B member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
10519943 .. 10523645
3703 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
ATGGGCGTCGATTACTACAAGGTTCTTCAAGTAGAACGGAATGCCAAAGACGATGACTTGAAGAAAGCCTATCGCAAGCTCGCCATGAAATGGCACCCCGATAAAAACCCTAACAACAAGAAAGCCGCCGAAGCCAAATTCAAGCAAATCTCCGAAGCCTACGATGTTTTGAGTGATCCTCAAAAGCGAGCGGTGTACGATCAGTACGGCGAGGAGGGTTTGAAGGCAGGGGCGCCGCCGCCGGATTCGGGGTTTTCGGCCGGCGGACAGGACGGTCCGACCACGTTCCGGTTCAATACCAGGAACCCGGATGATATATTTTCCGAGTTTTTCGGGTTTTCGGGTTTCGGACAGGGGATGCCGGACATGGGCCGGGCCGGCGGGTCGAGGCCGGGTGGGGCGTTCCCGAGGAGCATGTTTGGGGATGACATATTTGCTTCGTTTAGAGGCGCAGGTGAACCCTCTGCTAATGTGCAGAGGAAAGCCCAGCCCATTGAGAGGACATTGCCATGTACTCTGGAGGACTTGTATAAGGGCACCACCAAGAAGATGAAGATTTCCAGGGATGTTGCTGATTCTAGTGGGAGATCAACCACGGTTGAGGAAATTCTCACAATTGAGATCAAGCCAGGTTGGAAAAAAGGCACAAAAATCACTTTCCCAGAGAAGGGAAATGAGCAGCGAGGTGTTATACCAGCAGACCTCGTCTTTATTATTGATGAGAAACCTCATAGTCTTTTCAAGAGGGATGGGAACGATCTTATCGTCACTCAGAAGATATCTCTTGCCGAAGCTCTGACAGGTCACACAGCACAGCTGACAACCCTGGATGGGAGAAGTCTCACAGTGCCCATCAATTCTATTATCAGCCCCACCTATGAAGAAGTGGTCAAAGGGGAGGGAATGCCAATCCCCAAGGAACCTTCCAAAAAGGGGAACTTAAGAGTCAAGTTCAACATCAAGTTCCCTACCAAGCTTACCTCAGAGCAGAAAACCGGTATAAAAAGGTTACTAACGGCGTAA

Protein Analysis

340

Amino Acids

37.47

Weight (kDa)

9.31

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 4 - 67 2e-27 DnaJ domain
DnaJ_C PF01556 165 - 323 1e-42 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 443
AasI GACNNNNNNGTC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 443
AccB1I GGYRCC 3 cut(s) 93, 232, 536
AccB7I CCANNNNNTGG 1 cut(s) 90
AccBSI CCGCTC 1 cut(s) 191
AciI CCGC 6 cut(s) 126, 191, 236, 239, 264, 381
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 2 cut(s) 137, 606
AcyI GRCGYC 2 cut(s) 6, 233
AfaI GTAC 3 cut(s) 197, 206, 514
AfiI CCNNNNNNNGG 9 cut(s) 90, 248, 288, 368, 498, 667, 668, 831, 933
AflII CTTAAG 1 cut(s) 940
AgeI ACCGGT 1 cut(s) 995
AgsI TTSAA 7 cut(s) 29, 61, 142, 223, 295, 742, 955
AjnI CCWGG 4 cut(s) 299, 560, 628, 825
AluBI AGCT 4 cut(s) 79, 794, 817, 976
AluI AGCT 4 cut(s) 79, 794, 817, 976
Alw26I GTCTC 1 cut(s) 845
AlwI GGATC 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 406
AoxI GGCC 4 cut(s) 258, 370, 375, 389
ApeKI GCWGC 1 cut(s) 679
ApoI RAATTY 2 cut(s) 137, 606
AsiGI ACCGGT 1 cut(s) 995
AspLEI GCGC 2 cut(s) 235, 452
AspS9I GGNCC 3 cut(s) 275, 370, 375
AsuC2I CCSGG 3 cut(s) 308, 374, 393
AsuHPI GGTGA 1 cut(s) 467
AvaI CYCGRG 1 cut(s) 406
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 2 cut(s) 539, 852
BanI GGYRCC 3 cut(s) 93, 232, 536
BbvI GCAGC 1 cut(s) 691
BccI CCATC 3 cut(s) 743, 824, 860
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 4 cut(s) 301, 562, 630, 827
BcnI CCSGG 3 cut(s) 308, 374, 393
BcoDI GTCTC 1 cut(s) 845
BfaI CTAG 1 cut(s) 579
BfoI RGCGCY 1 cut(s) 236
BfrI CTTAAG 1 cut(s) 940
BfuAI ACCTGC 1 cut(s) 443
BglI GCCNNNNNGGC 1 cut(s) 378
BisI GCNGC 4 cut(s) 126, 236, 239, 680
BlsI GCNGC 4 cut(s) 127, 237, 240, 681
Bme1390I CCNGG 7 cut(s) 301, 308, 374, 393, 562, 630, 827
Bme18I GGWCC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 406
BmgT120I GGNCC 3 cut(s) 275, 370, 375
BmiI GGNNCC 5 cut(s) 95, 234, 305, 538, 921
BmrFI CCNGG 7 cut(s) 301, 308, 374, 393, 562, 630, 827
BmsI GCATC 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 163, 195
BpmI CTGGAG 1 cut(s) 539
BpuMI CCSGG 3 cut(s) 308, 374, 393
BsaHI GRCGYC 2 cut(s) 6, 233
BsaJI CCNNGG 5 cut(s) 407, 561, 594, 825, 915
BsaWI WCCGGW 2 cut(s) 288, 995
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 9 cut(s) 90, 248, 288, 368, 498, 667, 668, 831, 933
Bse118I RCCGGY 3 cut(s) 260, 377, 995
Bse3DI GCAATG 1 cut(s) 503
BseBI CCWGG 4 cut(s) 301, 562, 630, 827
BseDI CCNNGG 5 cut(s) 407, 561, 594, 825, 915
BseGI GGATG 6 cut(s) 316, 363, 430, 571, 754, 835
BseLI CCNNNNNNNGG 9 cut(s) 90, 248, 288, 368, 498, 667, 668, 831, 933
BseMI GCAATG 1 cut(s) 503
BseMII CTCAG 2 cut(s) 785, 996
BseRI GAGGAG 2 cut(s) 227, 424
BseSI GKGCMC 2 cut(s) 539, 852
BseX3I CGGCCG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 691
BseYI CCCAGC 1 cut(s) 486
BsgI GTGCAG 1 cut(s) 494
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 4 cut(s) 260, 372, 377, 391
BshNI GGYRCC 3 cut(s) 93, 232, 536
BshTI ACCGGT 1 cut(s) 995
BsiEI CGRYCG 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 406
BsiSI CCGG 9 cut(s) 242, 261, 289, 308, 362, 373, 378, 392, 996
BslI CCNNNNNNNGG 9 cut(s) 90, 248, 288, 368, 498, 667, 668, 831, 933
BsmAI GTCTC 1 cut(s) 845
BsmI GAATGC 2 cut(s) 46, 909
BsnI GGCC 4 cut(s) 260, 372, 377, 391
BsoBI CYCGRG 1 cut(s) 406
Bsp1286I GDGCHC 2 cut(s) 539, 852
Bsp143I GATC 5 cut(s) 175, 199, 587, 621, 757
BspACI CCGC 6 cut(s) 126, 191, 236, 239, 264, 381
BspANI GGCC 4 cut(s) 260, 372, 377, 391
BspCNI CTCAG 2 cut(s) 784, 995
BspLI GGNNCC 5 cut(s) 95, 234, 305, 538, 921
BspMI ACCTGC 1 cut(s) 443
BspPI GGATC 1 cut(s) 170
BspT107I GGYRCC 3 cut(s) 93, 232, 536
BspTI CTTAAG 1 cut(s) 940
BsrBI CCGCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 503
BsrFI RCCGGY 3 cut(s) 260, 377, 995
BssAI RCCGGY 3 cut(s) 260, 377, 995
BssECI CCNNGG 5 cut(s) 407, 561, 594, 825, 915
BssMI GATC 5 cut(s) 175, 199, 587, 621, 757
BssNI GRCGYC 2 cut(s) 6, 233
BssT1I CCWWGG 1 cut(s) 915
Bst2UI CCWGG 4 cut(s) 301, 562, 630, 827
Bst4CI ACNGT 3 cut(s) 275, 598, 847
BstACI GRCGYC 2 cut(s) 6, 233
BstAFI CTTAAG 1 cut(s) 940
BstC8I GCNNGC 5 cut(s) 77, 81, 189, 262, 379
BstDEI CTNAG 2 cut(s) 771, 982
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 6 cut(s) 316, 363, 430, 571, 754, 835
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 2 cut(s) 235, 452
BstKTI GATC 5 cut(s) 178, 202, 590, 624, 760
BstMAI GTCTC 1 cut(s) 845
BstMBI GATC 5 cut(s) 175, 199, 587, 621, 757
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 131, 378
BstNI CCWGG 4 cut(s) 301, 562, 630, 827
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 7 cut(s) 299, 306, 372, 391, 560, 628, 825
BstSLI GKGCMC 2 cut(s) 539, 852
BstV1I GCAGC 1 cut(s) 691
BstZI CGGCCG 1 cut(s) 258
BsuRI GGCC 4 cut(s) 260, 372, 377, 391
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 6 cut(s) 316, 363, 430, 571, 754, 835
BtsIMutI CAGTG 1 cut(s) 852
BveI ACCTGC 1 cut(s) 443
Cac8I GCNNGC 5 cut(s) 77, 81, 189, 262, 379
CfoI GCGC 2 cut(s) 235, 452
Cfr10I RCCGGY 3 cut(s) 260, 377, 995
Cfr13I GGNCC 3 cut(s) 275, 370, 375
CpoI CGGWCCG 1 cut(s) 275
Csp6I GTAC 3 cut(s) 196, 205, 513
CspAI ACCGGT 1 cut(s) 995
CspI CGGWCCG 1 cut(s) 275
CviAII CATG 4 cut(s) 85, 367, 415, 510
CviQI GTAC 3 cut(s) 196, 205, 513
DdeI CTNAG 2 cut(s) 771, 982
DinI GGCGCC 1 cut(s) 234
DpnI GATC 5 cut(s) 177, 201, 589, 623, 759
DpnII GATC 5 cut(s) 175, 199, 587, 621, 757
DrdI GACNNNNNNGTC 1 cut(s) 273
DseDI GACNNNNNNGTC 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 258
EagI CGGCCG 1 cut(s) 258
EciI GGCGGA 1 cut(s) 279
EclXI CGGCCG 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 915
Eco32I GATATC 1 cut(s) 780
Eco47I GGWCC 1 cut(s) 275
Eco52I CGGCCG 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 406
EcoRII CCWGG 4 cut(s) 299, 560, 628, 825
EcoRV GATATC 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 915
EgeI GGCGCC 1 cut(s) 234
EheI GGCGCC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 915
FaeI CATG 4 cut(s) 88, 370, 418, 513
FalI AAGNNNNNCTT 2 cut(s) 923, 955
FatI CATG 4 cut(s) 84, 366, 414, 509
FauI CCCGC 1 cut(s) 374
Fnu4HI GCNGC 4 cut(s) 126, 236, 239, 680
FokI GGATG 6 cut(s) 323, 370, 437, 578, 761, 842
Fsp4HI GCNGC 4 cut(s) 126, 236, 239, 680
FspBI CTAG 1 cut(s) 579
GlaI GCGC 2 cut(s) 234, 451
GluI GCNGC 4 cut(s) 126, 236, 239, 680
GsaI CCCAGC 1 cut(s) 490
GsuI CTGGAG 1 cut(s) 539
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 4 cut(s) 260, 372, 377, 391
HapII CCGG 9 cut(s) 242, 261, 289, 308, 362, 373, 378, 392, 996
HhaI GCGC 2 cut(s) 235, 452
Hin1I GRCGYC 2 cut(s) 6, 233
Hin1II CATG 4 cut(s) 88, 370, 418, 513
Hin6I GCGC 2 cut(s) 233, 450
HinP1I GCGC 2 cut(s) 233, 450
HindIII AAGCTT 1 cut(s) 974
HinfI GANTC 3 cut(s) 245, 575, 945
HpaII CCGG 9 cut(s) 242, 261, 289, 308, 362, 373, 378, 392, 996
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 196, 458
Hpy188I TCNGA 7 cut(s) 154, 279, 325, 350, 774, 798, 985
Hpy188III TCNNGA 3 cut(s) 406, 518, 742
Hpy8I GTNNAC 2 cut(s) 196, 458
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 217, 661, 933
HpyCH4III ACNGT 3 cut(s) 275, 598, 847
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 1 cut(s) 475
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 378
HpyF3I CTNAG 2 cut(s) 771, 982
HpySE526I ACGT 1 cut(s) 284
Hsp92I GRCGYC 2 cut(s) 6, 233
Hsp92II CATG 4 cut(s) 88, 370, 418, 513
HspAI GCGC 2 cut(s) 233, 450
KasI GGCGCC 1 cut(s) 232
KroI GCCGGC 2 cut(s) 260, 377
KroNI GCCGGC 2 cut(s) 262, 379
Kzo9I GATC 5 cut(s) 175, 199, 587, 621, 757
LmnI GCTCC 1 cut(s) 411
Lsp1109I GCAGC 1 cut(s) 691
LweI GCATC 1 cut(s) 348
MaeI CTAG 1 cut(s) 579
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 3 cut(s) 766, 803, 1008
MalI GATC 5 cut(s) 177, 201, 589, 623, 759
MbiI CCGCTC 1 cut(s) 191
MboI GATC 5 cut(s) 175, 199, 587, 621, 757
MboII GAAGA 6 cut(s) 17, 73, 559, 565, 787, 893
MfeI CAATTG 1 cut(s) 615
MhlI GDGCHC 2 cut(s) 539, 852
MluCI AATT 4 cut(s) 137, 606, 615, 856
Mly113I GGCGCC 1 cut(s) 233
MlyI GAGTC 1 cut(s) 954
MmeI TCCRAC 2 cut(s) 302, 614
MroNI GCCGGC 2 cut(s) 260, 377
MseI TTAA 1 cut(s) 941
MslI CAYNNNNRTG 1 cut(s) 508
MspA1I CMGCKG 1 cut(s) 817
MspCI CTTAAG 1 cut(s) 940
MspI CCGG 9 cut(s) 242, 261, 289, 308, 362, 373, 378, 392, 996
MspR9I CCNGG 7 cut(s) 301, 308, 374, 393, 562, 630, 827
MunI CAATTG 1 cut(s) 615
Mva1269I GAATGC 2 cut(s) 46, 909
MvaI CCWGG 4 cut(s) 301, 562, 630, 827
MwoI GCNNNNNNNGC 2 cut(s) 131, 378
NaeI GCCGGC 2 cut(s) 262, 379
NarI GGCGCC 1 cut(s) 233
NciI CCSGG 3 cut(s) 308, 374, 393
NdeII GATC 5 cut(s) 175, 199, 587, 621, 757
NgoMIV GCCGGC 2 cut(s) 260, 377
NlaIII CATG 4 cut(s) 88, 370, 418, 513
NlaIV GGNNCC 5 cut(s) 95, 234, 305, 538, 921
NmuCI GTSAC 2 cut(s) 766, 803
NspI RCATGY 1 cut(s) 418
PaqCI CACCTGC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 762
PctI GAATGC 2 cut(s) 46, 909
PdiI GCCGGC 2 cut(s) 262, 379
PfeI GAWTC 2 cut(s) 245, 575
PflFI GACNNNGTC 1 cut(s) 704
PflMI CCANNNNNTGG 1 cut(s) 90
PinAI ACCGGT 1 cut(s) 995
PkrI GCNGC 4 cut(s) 127, 237, 240, 681
PleI GAGTC 1 cut(s) 953
PluTI GGCGCC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 953
Psp6I CCWGG 4 cut(s) 299, 560, 628, 825
PspFI CCCAGC 1 cut(s) 486
PspGI CCWGG 4 cut(s) 299, 560, 628, 825
PspN4I GGNNCC 5 cut(s) 95, 234, 305, 538, 921
PspPI GGNCC 3 cut(s) 275, 370, 375
PsyI GACNNNGTC 1 cut(s) 704
PvuII CAGCTG 1 cut(s) 817
RsaI GTAC 3 cut(s) 197, 206, 514
RsaNI GTAC 3 cut(s) 196, 205, 513
RseI CAYNNNNRTG 1 cut(s) 508
Rsr2I CGGWCCG 1 cut(s) 275
RsrII CGGWCCG 1 cut(s) 275
SaqAI TTAA 1 cut(s) 941
SatI GCNGC 4 cut(s) 126, 236, 239, 680
Sau3AI GATC 5 cut(s) 175, 199, 587, 621, 757
Sau96I GGNCC 3 cut(s) 275, 370, 375
SchI GAGTC 1 cut(s) 954
ScrFI CCNGG 7 cut(s) 301, 308, 374, 393, 562, 630, 827
SduI GDGCHC 2 cut(s) 539, 852
SfaNI GCATC 1 cut(s) 348
SfoI GGCGCC 1 cut(s) 234
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 940
SmoI CTYRAG 1 cut(s) 940
Sse9I AATT 4 cut(s) 137, 606, 615, 856
SsiI CCGC 6 cut(s) 126, 191, 236, 239, 264, 381
SspDI GGCGCC 1 cut(s) 232
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 7 cut(s) 299, 306, 372, 391, 560, 628, 825
StyI CCWWGG 1 cut(s) 915
TaaI ACNGT 3 cut(s) 275, 598, 847
TaiI ACGT 1 cut(s) 287
TaqI TCGA 2 cut(s) 9, 386
TasI AATT 4 cut(s) 137, 606, 615, 856
TatI WGTACW 1 cut(s) 512
TauI GCSGC 3 cut(s) 128, 238, 241
TfiI GAWTC 2 cut(s) 245, 575
Tru1I TTAA 1 cut(s) 941
Tru9I TTAA 1 cut(s) 941
TscAI CASTG 1 cut(s) 852
TseFI GTSAC 2 cut(s) 766, 803
TseI GCWGC 1 cut(s) 679
Tsp45I GTSAC 2 cut(s) 766, 803
TspDTI ATGAA 3 cut(s) 101, 566, 894
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 852
Tth111I GACNNNGTC 1 cut(s) 704
Van91I CCANNNNNTGG 1 cut(s) 90
Vha464I CTTAAG 1 cut(s) 940
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 137, 606
XceI RCATGY 1 cut(s) 418
XspI CTAG 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.