RchiOBHm_Chr2g0134431

Triphosphate tunel metalloenzyme 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002663
Physical Location & Seq
Reverse (-)
51560014 .. 51560983
970 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
ATGTTTACACTCACCACCACCTCATTATCATATCACTCTATCAATAGTATAGAACATCCTTCACTCGTTTATTTTGTGGCAACCAAAACAACAATGGAAGTGGAAGTGAAGCTCCGCCTCCCAGACGCGTCCACACACCAAAAGCTCTCCGACCTCCTCTCACCCTTCCACCTCCAAACCCTAATCCAAGAGAACATCTTCTTCGACGGCTCCAACTCCGAGCTCTCCTCCAACCGCGCCGTCCTCCGCCTGCGCTTCTACGACGTCGCTTCCCGCTGCGTCCTCTCCCTCAAGGCCAAGCCCGTTATCTCCGACGGCGTCAGCCGCGTCTCAGAACTCGAAGAGCCATTCGACCCCGTCCTCGGACGCGCGTGCGTGGCCGAGCCATGGCGCCTCCTGGGTGTCAGTTCCTCCACTCTCCTAAAGCGCGTGAGAGAGGAGTTCGGGGTCGGAGAGCAAGGGTTTGTGTGCTTGGGTGGGTTTAGAAATGTGAGGAGCGTGTACGAGTGGAAGGGGTTGAAGCTAGAGTTGGACGAGAGCAACTTCGATTTCGGGACGTGTTATGAGTTGGAGTGTGAGAGCTTGAACCCTGAGAAGGATAAGAAGGTTCTAGAGGGGTTCTTGGAGGAGAATGGGATAAGGTACAAGTACTCGGATGTTTCCAAGTTTGGGGTTTTTAAGTCCGGCAAGTTGCCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYTH

Protein Analysis

233

Amino Acids

26.32

Weight (kDa)

5.55

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYTH PF01928 32 - 215 1.5e-18 CYTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 390
AccII CGCG 6 cut(s) 128, 237, 327, 369, 371, 429
AciI CCGC 5 cut(s) 115, 235, 247, 274, 325
AcoI YGGCCR 1 cut(s) 378
AcyI GRCGYC 3 cut(s) 264, 318, 391
AfaI GTAC 3 cut(s) 503, 644, 650
AfiI CCNNNNNNNGG 4 cut(s) 362, 387, 595, 669
AflIII ACRYGT 2 cut(s) 126, 557
AgsI TTSAA 2 cut(s) 520, 586
AjiI CACGTC 1 cut(s) 558
AjnI CCWGG 1 cut(s) 396
AjuI GAANNNNNNNTTGG 2 cut(s) 512, 544
AluBI AGCT 5 cut(s) 112, 145, 223, 523, 582
AluI AGCT 5 cut(s) 112, 145, 223, 523, 582
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 334
AoxI GGCC 2 cut(s) 294, 378
ApeKI GCWGC 1 cut(s) 276
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 5 cut(s) 239, 255, 371, 393, 429
AsuHPI GGTGA 2 cut(s) 4, 153
BanI GGYRCC 1 cut(s) 390
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 263
BceAI ACGGC 3 cut(s) 223, 224, 331
BciT130I CCWGG 1 cut(s) 398
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 2 cut(s) 524, 611
BfoI RGCGCY 1 cut(s) 394
BisI GCNGC 2 cut(s) 277, 325
BlsI GCNGC 2 cut(s) 278, 326
BmcAI AGTACT 1 cut(s) 650
Bme1390I CCNGG 1 cut(s) 398
BmgBI CACGTC 1 cut(s) 558
BmiI GGNNCC 2 cut(s) 211, 392
BmrFI CCNGG 1 cut(s) 398
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpuEI CTTGAG 1 cut(s) 275
BsaHI GRCGYC 3 cut(s) 264, 318, 391
BsaJI CCNNGG 3 cut(s) 361, 386, 397
Bsc4I CCNNNNNNNGG 4 cut(s) 362, 387, 595, 669
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 3 cut(s) 361, 386, 397
BseGI GGATG 2 cut(s) 55, 661
BseLI CCNNNNNNNGG 4 cut(s) 362, 387, 595, 669
BseMII CTCAG 2 cut(s) 345, 582
BseRI GAGGAG 5 cut(s) 146, 217, 452, 508, 641
BseXI GCAGC 1 cut(s) 263
Bsh1236I CGCG 6 cut(s) 128, 237, 327, 369, 371, 429
BshFI GGCC 2 cut(s) 296, 380
BshNI GGYRCC 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 2 cut(s) 684, 695
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 4 cut(s) 362, 387, 595, 669
BsmAI GTCTC 1 cut(s) 334
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 568
BsnI GGCC 2 cut(s) 296, 380
Bsp1286I GDGCHC 1 cut(s) 225
Bsp19I CCATGG 1 cut(s) 386
BspACI CCGC 5 cut(s) 115, 235, 247, 274, 325
BspANI GGCC 2 cut(s) 296, 380
BspCNI CTCAG 2 cut(s) 344, 583
BspFNI CGCG 6 cut(s) 128, 237, 327, 369, 371, 429
BspLI GGNNCC 2 cut(s) 211, 392
BspQI GCTCTTC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 390
BssECI CCNNGG 3 cut(s) 361, 386, 397
BssNI GRCGYC 3 cut(s) 264, 318, 391
BssT1I CCWWGG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 336
BstACI GRCGYC 3 cut(s) 264, 318, 391
BstC8I GCNNGC 2 cut(s) 251, 373
BstDEI CTNAG 2 cut(s) 331, 591
BstDSI CCRYGG 1 cut(s) 386
BstF5I GGATG 2 cut(s) 55, 661
BstFNI CGCG 6 cut(s) 128, 237, 327, 369, 371, 429
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 5 cut(s) 239, 255, 371, 393, 429
BstMAI GTCTC 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 324, 377
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 396
BstUI CGCG 6 cut(s) 128, 237, 327, 369, 371, 429
BstV1I GCAGC 1 cut(s) 263
BsuRI GGCC 2 cut(s) 296, 380
BtgI CCRYGG 1 cut(s) 386
BtrI CACGTC 1 cut(s) 558
BtsCI GGATG 2 cut(s) 55, 661
Cac8I GCNNGC 2 cut(s) 251, 373
CfoI GCGC 5 cut(s) 239, 255, 371, 393, 429
CseI GACGC 6 cut(s) 117, 134, 268, 307, 316, 375
Csp6I GTAC 3 cut(s) 502, 643, 649
CspCI CAANNNNNGTGG 2 cut(s) 81, 116
CviAII CATG 1 cut(s) 387
CviQI GTAC 3 cut(s) 502, 643, 649
DdeI CTNAG 2 cut(s) 331, 591
DinI GGCGCC 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
EciI GGCGGA 2 cut(s) 104, 236
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 386
Eco24I GRGCYC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 225
EgeI GGCGCC 1 cut(s) 392
EheI GGCGCC 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 386
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 1 cut(s) 390
FaiI YATR 4 cut(s) 31, 50, 388, 564
FaqI GGGAC 1 cut(s) 568
FatI CATG 1 cut(s) 386
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 2 cut(s) 277, 325
FokI GGATG 2 cut(s) 42, 668
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 2 cut(s) 277, 325
FspBI CTAG 2 cut(s) 524, 611
GlaI GCGC 5 cut(s) 238, 254, 370, 392, 428
GluI GCNGC 2 cut(s) 277, 325
HaeII RGCGCY 1 cut(s) 394
HaeIII GGCC 2 cut(s) 296, 380
HapII CCGG 2 cut(s) 684, 695
HgaI GACGC 6 cut(s) 117, 134, 268, 307, 316, 375
HhaI GCGC 5 cut(s) 239, 255, 371, 393, 429
Hin1I GRCGYC 3 cut(s) 264, 318, 391
Hin1II CATG 1 cut(s) 390
Hin6I GCGC 5 cut(s) 237, 253, 369, 391, 427
HinP1I GCGC 5 cut(s) 237, 253, 369, 391, 427
HpaII CCGG 2 cut(s) 684, 695
HphI GGTGA 2 cut(s) 4, 153
Hpy166II GTNNAC 3 cut(s) 6, 132, 502
Hpy188I TCNGA 7 cut(s) 151, 220, 313, 334, 365, 452, 655
Hpy188III TCNNGA 2 cut(s) 553, 611
Hpy8I GTNNAC 3 cut(s) 6, 132, 502
Hpy99I CGWCG 4 cut(s) 209, 266, 269, 317
HpyAV CCTTC 5 cut(s) 69, 175, 505, 589, 598
HpyCH4IV ACGT 2 cut(s) 264, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 324, 377
HpyF3I CTNAG 2 cut(s) 331, 591
HpySE526I ACGT 2 cut(s) 264, 557
Hsp92I GRCGYC 3 cut(s) 264, 318, 391
Hsp92II CATG 1 cut(s) 390
HspAI GCGC 5 cut(s) 237, 253, 369, 391, 427
KasI GGCGCC 1 cut(s) 390
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 3 cut(s) 117, 215, 495
LpnPI CCDG 6 cut(s) 135, 263, 383, 410, 603, 697
Lsp1109I GCAGC 1 cut(s) 263
MaeI CTAG 2 cut(s) 524, 611
MaeII ACGT 2 cut(s) 264, 557
MboII GAAGA 3 cut(s) 190, 193, 353
MhlI GDGCHC 1 cut(s) 225
MluI ACGCGT 1 cut(s) 126
Mly113I GGCGCC 1 cut(s) 391
MmeI TCCRAC 7 cut(s) 174, 237, 255, 336, 430, 510, 549
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 2 cut(s) 684, 695
MspR9I CCNGG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 6 cut(s) 128, 237, 327, 369, 371, 429
MwoI GCNNNNNNNGC 2 cut(s) 324, 377
NarI GGCGCC 1 cut(s) 391
NcoI CCATGG 1 cut(s) 386
NlaIII CATG 1 cut(s) 390
NlaIV GGNNCC 2 cut(s) 211, 392
NmeAIII GCCGAG 1 cut(s) 406
PciSI GCTCTTC 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 197
PflFI GACNNNGTC 2 cut(s) 317, 356
PkrI GCNGC 2 cut(s) 278, 326
PluTI GGCGCC 1 cut(s) 394
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 2 cut(s) 211, 392
PsyI GACNNNGTC 2 cut(s) 317, 356
RsaI GTAC 3 cut(s) 503, 644, 650
RsaNI GTAC 3 cut(s) 502, 643, 649
SacI GAGCTC 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 2 cut(s) 277, 325
ScaI AGTACT 1 cut(s) 650
ScrFI CCNGG 1 cut(s) 398
SduI GDGCHC 1 cut(s) 225
SfoI GGCGCC 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SsiI CCGC 5 cut(s) 115, 235, 247, 274, 325
SspDI GGCGCC 1 cut(s) 390
SspMI CTAG 2 cut(s) 524, 611
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 1 cut(s) 386
TaiI ACGT 2 cut(s) 267, 560
TaqI TCGA 4 cut(s) 204, 339, 351, 546
TatI WGTACW 1 cut(s) 648
TauI GCSGC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TseI GCWGC 1 cut(s) 276
Tth111I GACNNNGTC 2 cut(s) 317, 356
XbaI TCTAGA 1 cut(s) 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 2 cut(s) 524, 611
ZraI GACGTC 1 cut(s) 265
ZrmI AGTACT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.