Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006383

Physical Location & Seq

Genomic Coordinates Forward (+)

81630554 .. 81630802

Gene Structure 249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCTTTTTGCCCCCAAAGACTTCGTCCTCTCTCTCTCTCTCCAGCGCCCCAGATCCGTCATCATTCTCGTCAAGGCCGGCGCCCCTGTCGACCAGATCATCGCCGCTCTGTCCGCCTACATGGGGTCCGGCGACATCATTGACGGCGGCAACGAGTGGTACGAGAACACCGAGCGCCGCATCCACGAGGCCTCCACCAAGGGCCTCATCTACCTCTGCATGGGAGTCTCCGGCGGGGTTGCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008114 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0030054 GO:0033993 GO:0034284 GO:0034285 GO:0034641 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0050896 GO:0051156 GO:0051186 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0097305 GO:1901135 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map00480 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

6PGD NAD_binding_2

Protein Analysis

82

Amino Acids

8.74

Weight (kDa)

5.64

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	5 - 82	1.3e-12	NAD binding domain of 6-phosphogluconate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18580 FvH4_1g26372 FvH4_2g20410 FvH4_4g22091 FvH4_6g03960
malus_domestica	MD06G1098800.v1.1
pyrus_communis	pycom09g00540
rosa_chinensis	RchiOBHm_Chr2g0166921
rosa_laevigata	RLG00000027435 RLG00000032486
rosa_multiflora	Rmu_sc0000924.1_g000038
rosa_roxburghii	Rroxscaffold_7G00213370
rosa_rugosa	Rorug01G0478900
rosa_samantha	Rh2AG366200 Rh2AG622600 Rh2CG349300 Rh2CG575600 Rh2DG566800 Rh3CG253900 Rh4AG092400 Rh4AG252500 Rh4BG145600 Rh4CG100900 Rh7AG163700 Rh7BG254800 Rh7CG171800 Rh7CG388500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	5 cut(s)	105, 114, 147, 178, 234
AclWI	GGATC	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	123, 220
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	48
AoxI	GGCC	3 cut(s)	75, 189, 202
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AspLEI	GCGC	3 cut(s)	48, 83, 177
AspS9I	GGNCC	2 cut(s)	126, 202
AvaII	GGWCC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	80
BauI	CACGAG	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	232
BfoI	RGCGCY	3 cut(s)	49, 84, 178
BisI	GCNGC	3 cut(s)	105, 148, 178
BlsI	GCNGC	3 cut(s)	106, 149, 179
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	126, 202
BmiI	GGNNCC	2 cut(s)	82, 127
BmsI	GCATC	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 220
Bse118I	RCCGGY	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	123, 220
BshFI	GGCC	3 cut(s)	77, 191, 204
BshNI	GGYRCC	1 cut(s)	80
BsiSI	CCGG	3 cut(s)	78, 129, 231
BslI	CCNNNNNNNGG	2 cut(s)	123, 220
BsmAI	GTCTC	1 cut(s)	232
BsnI	GGCC	3 cut(s)	77, 191, 204
Bsp143I	GATC	2 cut(s)	53, 96
BspACI	CCGC	5 cut(s)	105, 114, 147, 178, 234
BspANI	GGCC	3 cut(s)	77, 191, 204
BspLI	GGNNCC	2 cut(s)	82, 127
BspPI	GGATC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	80
BsrBI	CCGCTC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	53, 96
BssNI	GRCGYC	1 cut(s)	81
BssSI	CACGAG	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	180
BstH2I	RGCGCY	3 cut(s)	49, 84, 178
BstHHI	GCGC	3 cut(s)	48, 83, 177
BstKTI	GATC	2 cut(s)	56, 99
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	53, 96
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	3 cut(s)	77, 191, 204
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	3 cut(s)	48, 83, 177
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	126, 202
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	2 cut(s)	121, 220
CviJI	RGCY	3 cut(s)	77, 191, 204
CviKI_1	RGCY	3 cut(s)	77, 191, 204
CviQI	GTAC	1 cut(s)	160
DinI	GGCGCC	1 cut(s)	82
DpnI	GATC	2 cut(s)	55, 98
DpnII	GATC	2 cut(s)	53, 96
EciI	GGCGGA	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	198
EgeI	GGCGCC	1 cut(s)	82
EheI	GGCGCC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	2 cut(s)	124, 223
FaiI	YATR	2 cut(s)	122, 221
FatI	CATG	2 cut(s)	120, 219
FauI	CCCGC	1 cut(s)	227
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	105, 148, 178
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	105, 148, 178
GlaI	GCGC	3 cut(s)	47, 82, 176
GluI	GCNGC	3 cut(s)	105, 148, 178
GsuI	CTGGAG	1 cut(s)	26
HaeII	RGCGCY	3 cut(s)	49, 84, 178
HaeIII	GGCC	3 cut(s)	77, 191, 204
HapII	CCGG	3 cut(s)	78, 129, 231
HhaI	GCGC	3 cut(s)	48, 83, 177
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	124, 223
Hin6I	GCGC	3 cut(s)	46, 81, 175
HinP1I	GCGC	3 cut(s)	46, 81, 175
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	225
HpaII	CCGG	3 cut(s)	78, 129, 231
Hpy166II	GTNNAC	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	124, 223
HspAI	GCGC	3 cut(s)	46, 81, 175
KasI	GGCGCC	1 cut(s)	80
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	53, 96
LpnPI	CCDG	8 cut(s)	56, 64, 91, 99, 107, 142, 228, 244
LweI	GCATC	1 cut(s)	189
MalI	GATC	2 cut(s)	55, 98
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	2 cut(s)	53, 96
MflI	RGATCY	1 cut(s)	53
Mly113I	GGCGCC	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	5 cut(s)	38, 181, 202, 215, 224
MroNI	GCCGGC	1 cut(s)	77
MspI	CCGG	3 cut(s)	78, 129, 231
MwoI	GCNNNNNNNGC	1 cut(s)	113
NaeI	GCCGGC	1 cut(s)	79
NarI	GGCGCC	1 cut(s)	81
NdeII	GATC	2 cut(s)	53, 96
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	2 cut(s)	124, 223
NlaIV	GGNNCC	2 cut(s)	82, 127
PceI	AGGCCT	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	3 cut(s)	150, 159, 168
PdiI	GCCGGC	1 cut(s)	79
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	106, 149, 179
PleI	GAGTC	1 cut(s)	233
PluTI	GGCGCC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	82, 127
PspPI	GGNCC	2 cut(s)	126, 202
PsuI	RGATCY	1 cut(s)	53
PsyI	GACNNNGTC	1 cut(s)	23
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SalI	GTCGAC	1 cut(s)	89
SatI	GCNGC	3 cut(s)	105, 148, 178
Sau3AI	GATC	2 cut(s)	53, 96
Sau96I	GGNCC	2 cut(s)	126, 202
SchI	GAGTC	1 cut(s)	234
SetI	ASST	1 cut(s)	216
SfaNI	GCATC	1 cut(s)	189
SfoI	GGCGCC	1 cut(s)	82
SinI	GGWCC	1 cut(s)	126
SseBI	AGGCCT	1 cut(s)	191
SsiI	CCGC	5 cut(s)	105, 114, 147, 178, 234
SspDI	GGCGCC	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	198
TaqI	TCGA	1 cut(s)	90
TauI	GCSGC	3 cut(s)	107, 150, 180
TspGWI	ACGGA	1 cut(s)	46
Tth111I	GACNNNGTC	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	126
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.