RchiOBHm_Chr1g0331981

EF-hand domain pair

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004510
Physical Location & Seq
Forward (+)
23053452 .. 23053733
282 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGGGAGTGGTGATAATTGACGGAACGACGGTGAAGGACTTCGTGAGCGACGAGGTGCAGTTCAAGAAGAGCGTGGACGAGCGTTTTGCTGCTTTGGATCTGAACAACGATGGTGTTCTGTCCCGGTCGGAGCTGCAGAAAGCATTCGAGTCGATGATATTGATCGAGACCCACTTCGGCATAGAAGTGGCGACCCCGCCGGATCAGCTGATTCCATATTCGATAAGTTCGACTGCGACCAGAGAGGGACGGTGGATCTGGACGAGTTCAGGGAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

93

Amino Acids

10.41

Weight (kDa)

4.84

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AclWI GGATC 3 cut(s) 105, 210, 263
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 2 cut(s) 133, 208
AluI AGCT 2 cut(s) 133, 208
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 3 cut(s) 105, 210, 263
ApeKI GCWGC 2 cut(s) 89, 133
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
Asp700I GAANNNNTTC 2 cut(s) 38, 143
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 22, 43
BbvI GCAGC 2 cut(s) 76, 120
BccI CCATC 1 cut(s) 104
BcgI CGANNNNNNTGC 4 cut(s) 68, 102, 132, 166
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 134
BisI GCNGC 2 cut(s) 90, 134
BlsI GCNGC 2 cut(s) 91, 135
Bme1390I CCNGG 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 161
BseJI GATNNNNATC 1 cut(s) 161
BseXI GCAGC 2 cut(s) 76, 120
BsgI GTGCAG 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 128
BsiEI CGRYCG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 124, 200
BslFI GGGAC 2 cut(s) 106, 261
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 2 cut(s) 106, 261
BsmI GAATGC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 161
Bsp143I GATC 4 cut(s) 97, 162, 202, 255
BspACI CCGC 1 cut(s) 197
BspMAI CTGCAG 1 cut(s) 138
BspPI GGATC 3 cut(s) 105, 210, 263
BspQI GCTCTTC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 161
BssMI GATC 4 cut(s) 97, 162, 202, 255
Bst4CI ACNGT 2 cut(s) 31, 252
Bst6I CTCTTC 1 cut(s) 62
BstKTI GATC 4 cut(s) 100, 165, 205, 258
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 4 cut(s) 97, 162, 202, 255
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 76, 120
BstX2I RGATCY 2 cut(s) 97, 255
BstYI RGATCY 2 cut(s) 97, 255
CviJI RGCY 2 cut(s) 133, 208
CviKI_1 RGCY 2 cut(s) 133, 208
DpnI GATC 4 cut(s) 99, 164, 204, 257
DpnII GATC 4 cut(s) 97, 162, 202, 255
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 161
FaiI YATR 2 cut(s) 182, 217
FaqI GGGAC 2 cut(s) 106, 261
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 90, 134
Fsp4HI GCNGC 2 cut(s) 90, 134
GluI GCNGC 2 cut(s) 90, 134
HapII CCGG 2 cut(s) 124, 200
HinfI GANTC 2 cut(s) 149, 211
HpaII CCGG 2 cut(s) 124, 200
HphI GGTGA 2 cut(s) 22, 43
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 102, 130
Hpy188III TCNNGA 4 cut(s) 43, 64, 166, 259
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 31, 53
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 2 cut(s) 31, 252
HpyCH4V TGCA 2 cut(s) 58, 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
Kzo9I GATC 4 cut(s) 97, 162, 202, 255
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 5 cut(s) 137, 213, 244, 253, 255
Lsp1109I GCAGC 2 cut(s) 76, 120
MalI GATC 4 cut(s) 99, 164, 204, 257
MboI GATC 4 cut(s) 97, 162, 202, 255
MboII GAAGA 1 cut(s) 79
MflI RGATCY 2 cut(s) 97, 255
MluCI AATT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 3 cut(s) 46, 238, 267
MroXI GAANNNNTTC 2 cut(s) 38, 143
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 2 cut(s) 124, 200
MspR9I CCNGG 1 cut(s) 124
Mva1269I GAATGC 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 124
NdeII GATC 4 cut(s) 97, 162, 202, 255
PciSI GCTCTTC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 227
PctI GAATGC 1 cut(s) 143
PdmI GAANNNNTTC 2 cut(s) 38, 143
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 2 cut(s) 91, 135
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 138
PsuI RGATCY 2 cut(s) 97, 255
PvuII CAGCTG 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 62
SatI GCNGC 2 cut(s) 90, 134
Sau3AI GATC 4 cut(s) 97, 162, 202, 255
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 124
SetI ASST 3 cut(s) 57, 135, 210
SfcI CTRYAG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 1 cut(s) 15
SsiI CCGC 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 31, 252
TaqI TCGA 5 cut(s) 147, 152, 165, 221, 230
TasI AATT 1 cut(s) 15
TfiI GAWTC 1 cut(s) 211
TseI GCWGC 2 cut(s) 89, 133
TspGWI ACGGA 1 cut(s) 36
XmnI GAANNNNTTC 2 cut(s) 38, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.