RchiOBHm_Chr1g0364371

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002824
Physical Location & Seq
Forward (+)
55572561 .. 55578422
5862 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1086 bp
ATGCCGCCAAAGGCATCGAAGGCCGACGTGGCCAAGAAGCAGAAGGTGGTGGAGGACAAGACCTTCGGCCTGAAGAACAAGAACAAGAGCAAGAGTGTCCAGAAGTACGTCCAGCAAATCAAGTCGTCAGTCCAGCCCAAAGTCGACCCTACCAAAGCTAAGAAAAAGAAGGAGGAAGAGAAAGCCAAAGAGAAGGAGCTTAATGATTTGTTCAAGGTTGCTGTTAGTCAGCCAAAAGTGCCACCGGGTGTGGATCCCAAGTCCATTGTGTGCGAGTTTTTCAAGGCCGGGCAGTGTACTAAAGGATTCAAGTGCAAGTTTTCTCATGATTTGAATGTCCAGAGGAAGGGTGAAAAGATTGACATTTACAGTGATAAGCGCGACGATGAAACAATGGAGGAGTGGGATCAAGAGATGTTGGAAAAGGTTGTGGAGTCAAAGAAGAATGAGTATAACCAGAATAAGCCCACTGAGATTGTTTGCAAGTTCTTCTTGGAGGCAGTCGAAAAGAAACAGTATGGTTGGTTCTGGGTTTGTCCAAACGGTAGCAAAGAGTGCCACTACCGACATGCTCTTCCTCCGGGCTATATTTTGAAGTCTCAGATGAAGGCACTTCTTGAGGAAGAATCTCACAAGATTGCCATTGAGGACGAGATTGAAAACCAGCGTGCTAAAGTAACAACATGTACTCCGATGACTACTGAGTTGTTCATGCAATGGAGGAATAAGAAGACAGAAGAGAAAGAAGCTGGCCTGGCTGCACAACGAGCAGATAGGGCTAAGAATGACCGCATGAGTGGTCGTGAGTTGTTTCTTGCGGATGCAAGCTTGTTTGTGGATGATGCTGAAGCATATGAAAAATACCAAAGACAAGAAGAACCTGAAGCATCTGAAGAGAAGATCAAAGGCAACTCTGCAGCAGTGGGACCAAGTAGCTCTACTAGTGCTGCTGGTTCTGAAGAAGTCCCTGTTGATGATGATGAGGATGACGATGATGAGTTGGACTTGGATGAGTTAAATGAACTCGAAGCAAGTTTGTCAAGAACATCGATTCAGATACGGGAACCGGGAATAGAGGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

361

Amino Acids

41.06

Weight (kDa)

5.32

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 212 - 291 2.8e-17 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 381
AciI CCGC 3 cut(s) 5, 790, 818
AclWI GGATC 3 cut(s) 248, 261, 414
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 5 cut(s) 92, 867, 903, 912, 978
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 3 cut(s) 107, 298, 688
AfiI CCNNNNNNNGG 1 cut(s) 346
AflIII ACRYGT 1 cut(s) 683
AgsI TTSAA 6 cut(s) 214, 283, 310, 334, 595, 659
AhlI ACTAGT 1 cut(s) 941
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 1 cut(s) 753
AluBI AGCT 5 cut(s) 158, 199, 749, 828, 936
AluI AGCT 5 cut(s) 158, 199, 749, 828, 936
Alw26I GTCTC 1 cut(s) 603
AlwI GGATC 3 cut(s) 248, 261, 414
AoxI GGCC 5 cut(s) 21, 30, 67, 285, 751
ApeKI GCWGC 3 cut(s) 758, 917, 947
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 926
AsuC2I CCSGG 4 cut(s) 246, 289, 582, 1068
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 926
BalI TGGCCA 1 cut(s) 32
BamHI GGATCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 737
BbvI GCAGC 3 cut(s) 745, 929, 934
BciT130I CCWGG 1 cut(s) 755
BcnI CCSGG 4 cut(s) 246, 289, 582, 1068
BcoDI GTCTC 1 cut(s) 603
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 1 cut(s) 942
BfmI CTRYAG 1 cut(s) 915
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 4 cut(s) 5, 759, 918, 948
BlsI GCNGC 4 cut(s) 6, 760, 919, 949
Bme1390I CCNGG 5 cut(s) 246, 289, 582, 755, 1068
Bme18I GGWCC 1 cut(s) 926
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 926
BmiI GGNNCC 3 cut(s) 255, 927, 1065
BmrFI CCNGG 5 cut(s) 246, 289, 582, 755, 1068
BmsI GCATC 4 cut(s) 23, 811, 832, 896
BpiI GAAGAC 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 638
BpuMI CCSGG 4 cut(s) 246, 289, 582, 1068
Bsa29I ATCGAT 1 cut(s) 1049
BsaXI ACNNNNNCTCC 2 cut(s) 673, 703
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 722
BseBI CCWGG 1 cut(s) 755
BseCI ATCGAT 1 cut(s) 1049
BseGI GGATG 4 cut(s) 826, 844, 991, 1015
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 722
BseMII CTCAG 3 cut(s) 462, 614, 693
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 745, 929, 934
BsgI GTGCAG 1 cut(s) 744
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 5 cut(s) 23, 32, 69, 287, 753
BshVI ATCGAT 1 cut(s) 1049
BsiSI CCGG 4 cut(s) 245, 288, 581, 1067
BslFI GGGAC 2 cut(s) 939, 950
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 603
BsmFI GGGAC 2 cut(s) 939, 950
BsnI GGCC 5 cut(s) 23, 32, 69, 287, 753
Bsp143I GATC 3 cut(s) 253, 406, 900
BspACI CCGC 3 cut(s) 5, 790, 818
BspANI GGCC 5 cut(s) 23, 32, 69, 287, 753
BspCNI CTCAG 3 cut(s) 463, 613, 694
BspDI ATCGAT 1 cut(s) 1049
BspFNI CGCG 1 cut(s) 381
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 255, 927, 1065
BspMAI CTGCAG 1 cut(s) 919
BspPI GGATC 3 cut(s) 248, 261, 414
BspQI GCTCTTC 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 722
BssMI GATC 3 cut(s) 253, 406, 900
Bst2UI CCWGG 1 cut(s) 755
Bst4CI ACNGT 3 cut(s) 371, 516, 545
Bst6I CTCTTC 4 cut(s) 171, 579, 732, 888
BstAPI GCANNNNNTGC 1 cut(s) 555
BstC8I GCNNGC 3 cut(s) 669, 751, 826
BstDEI CTNAG 5 cut(s) 159, 471, 600, 702, 780
BstF5I GGATG 4 cut(s) 826, 844, 991, 1015
BstFNI CGCG 1 cut(s) 381
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 3 cut(s) 256, 409, 903
BstMAI GTCTC 1 cut(s) 603
BstMBI GATC 3 cut(s) 253, 406, 900
BstMWI GCNNNNNNNGC 7 cut(s) 20, 29, 238, 555, 755, 767, 776
BstNI CCWGG 1 cut(s) 755
BstNSI RCATGY 2 cut(s) 572, 687
BstSCI CCNGG 5 cut(s) 244, 287, 580, 753, 1066
BstSFI CTRYAG 1 cut(s) 915
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 745, 929, 934
BstV2I GAAGAC 1 cut(s) 737
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
Bsu15I ATCGAT 1 cut(s) 1049
BsuRI GGCC 5 cut(s) 23, 32, 69, 287, 753
BsuTUI ATCGAT 1 cut(s) 1049
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 4 cut(s) 826, 844, 991, 1015
BtsI GCAGTG 2 cut(s) 299, 927
BtsIMutI CAGTG 4 cut(s) 299, 376, 468, 927
Cac8I GCNNGC 3 cut(s) 669, 751, 826
CciI TCATGA 1 cut(s) 325
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 926
ClaI ATCGAT 1 cut(s) 1049
Csp6I GTAC 3 cut(s) 106, 297, 687
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 5 cut(s) 326, 569, 684, 712, 793
CviQI GTAC 3 cut(s) 106, 297, 687
DdeI CTNAG 5 cut(s) 159, 471, 600, 702, 780
DpnI GATC 3 cut(s) 255, 408, 902
DpnII GATC 3 cut(s) 253, 406, 900
DraIII CACNNNGTG 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 4 cut(s) 171, 579, 732, 888
EarI CTCTTC 4 cut(s) 171, 579, 732, 888
Eco47I GGWCC 1 cut(s) 926
Eco57I CTGAAG 5 cut(s) 92, 867, 903, 912, 978
EcoRII CCWGG 1 cut(s) 753
FaeI CATG 5 cut(s) 329, 572, 687, 715, 796
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 2 cut(s) 939, 950
FatI CATG 5 cut(s) 325, 568, 683, 711, 792
FauNDI CATATG 1 cut(s) 853
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 5, 759, 918, 948
FokI GGATG 4 cut(s) 833, 851, 998, 1022
Fsp4HI GCNGC 4 cut(s) 5, 759, 918, 948
FspBI CTAG 1 cut(s) 942
GlaI GCGC 1 cut(s) 380
GluI GCNGC 4 cut(s) 5, 759, 918, 948
HaeIII GGCC 5 cut(s) 23, 32, 69, 287, 753
HapII CCGG 4 cut(s) 245, 288, 581, 1067
HhaI GCGC 1 cut(s) 381
Hin1II CATG 5 cut(s) 329, 572, 687, 715, 796
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 826
HinfI GANTC 4 cut(s) 306, 434, 626, 1051
HpaII CCGG 4 cut(s) 245, 288, 581, 1067
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 145, 297
Hpy188I TCNGA 5 cut(s) 603, 693, 892, 958, 1056
Hpy188III TCNNGA 8 cut(s) 100, 326, 340, 410, 617, 803, 1041, 1083
Hpy8I GTNNAC 2 cut(s) 145, 297
Hpy99I CGWCG 2 cut(s) 29, 386
HpyAV CCTTC 7 cut(s) 13, 37, 73, 163, 187, 340, 601
HpyCH4III ACNGT 3 cut(s) 371, 516, 545
HpyCH4IV ACGT 2 cut(s) 27, 108
HpyCH4V TGCA 6 cut(s) 315, 483, 715, 761, 824, 917
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 29, 238, 555, 755, 767, 776
HpyF3I CTNAG 5 cut(s) 159, 471, 600, 702, 780
HpySE526I ACGT 2 cut(s) 27, 108
Hsp92II CATG 5 cut(s) 329, 572, 687, 715, 796
HspAI GCGC 1 cut(s) 379
Kzo9I GATC 3 cut(s) 253, 406, 900
LguI GCTCTTC 1 cut(s) 579
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 3 cut(s) 745, 929, 934
LweI GCATC 4 cut(s) 23, 811, 832, 896
MaeI CTAG 1 cut(s) 942
MaeII ACGT 2 cut(s) 27, 108
MaeIII GTNAC 1 cut(s) 676
MalI GATC 3 cut(s) 255, 408, 902
MboI GATC 3 cut(s) 253, 406, 900
MflI RGATCY 1 cut(s) 253
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 2 cut(s) 399, 981
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 2 cut(s) 201, 1016
Msp20I TGGCCA 1 cut(s) 32
MspI CCGG 4 cut(s) 245, 288, 581, 1067
MspR9I CCNGG 5 cut(s) 246, 289, 582, 755, 1068
MvaI CCWGG 1 cut(s) 755
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 7 cut(s) 20, 29, 238, 555, 755, 767, 776
NciI CCSGG 4 cut(s) 246, 289, 582, 1068
NdeI CATATG 1 cut(s) 853
NdeII GATC 3 cut(s) 253, 406, 900
NlaIII CATG 5 cut(s) 329, 572, 687, 715, 796
NlaIV GGNNCC 3 cut(s) 255, 927, 1065
NspI RCATGY 2 cut(s) 572, 687
PagI TCATGA 1 cut(s) 325
PciI ACATGT 1 cut(s) 683
PciSI GCTCTTC 1 cut(s) 579
PfeI GAWTC 3 cut(s) 306, 626, 1051
PkrI GCNGC 4 cut(s) 6, 760, 919, 949
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PscI ACATGT 1 cut(s) 683
Psp6I CCWGG 1 cut(s) 753
PspGI CCWGG 1 cut(s) 753
PspN4I GGNNCC 3 cut(s) 255, 927, 1065
PspPI GGNCC 1 cut(s) 926
PsrI GAACNNNNNNTAC 2 cut(s) 509, 541
PstI CTGCAG 1 cut(s) 919
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 3 cut(s) 107, 298, 688
RsaNI GTAC 3 cut(s) 106, 297, 687
SalI GTCGAC 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 579
SaqAI TTAA 2 cut(s) 201, 1016
SatI GCNGC 4 cut(s) 5, 759, 918, 948
Sau3AI GATC 3 cut(s) 253, 406, 900
Sau96I GGNCC 1 cut(s) 926
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 5 cut(s) 246, 289, 582, 755, 1068
SfaNI GCATC 4 cut(s) 23, 811, 832, 896
SfcI CTRYAG 1 cut(s) 915
SfiI GGCCNNNNNGGCC 1 cut(s) 29
SinI GGWCC 1 cut(s) 926
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
SpeI ACTAGT 1 cut(s) 941
SsiI CCGC 3 cut(s) 5, 790, 818
SspMI CTAG 1 cut(s) 942
StyD4I CCNGG 5 cut(s) 244, 287, 580, 753, 1066
TaaI ACNGT 3 cut(s) 371, 516, 545
TaiI ACGT 2 cut(s) 30, 111
TaqI TCGA 5 cut(s) 17, 144, 504, 1026, 1049
TatI WGTACW 2 cut(s) 296, 686
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 3 cut(s) 306, 626, 1051
Tru1I TTAA 2 cut(s) 201, 1016
Tru9I TTAA 2 cut(s) 201, 1016
TscAI CASTG 4 cut(s) 299, 376, 475, 927
TseI GCWGC 3 cut(s) 758, 917, 947
TspDTI ATGAA 5 cut(s) 402, 620, 700, 870, 1035
TspRI CASTG 4 cut(s) 299, 376, 475, 927
VpaK11BI GGWCC 1 cut(s) 926
XceI RCATGY 2 cut(s) 572, 687
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.